Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0008877

Physical Location & Seq

Genomic Coordinates Forward (+)

77153520 .. 77157537

Gene Structure 4018 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG541900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3123 bp

ATGCCAAACAGTACCAATGGTGATGAGGCCTCTGAAGGCATCAGCAACCCGACTCTTACTACTGAACTTAAGCAGAGCCGCTGGTATAGATACTATGTTATTGTGGTTTTCATCTGGCGCTCCGGAACCAAGCCACGCCTCCGCAGAGCAAAGGCCCCTTATCATCAACGGTTTCTGAAAAAGTTTGCTCGCCTTGATGTGAGACAGGACCTCAGATCCTACTTCAAGGATCGTGCTGCCTATATACCTTTGTTAGCGCCAACAACACCAACAACGCCGCCAGCCGCTGCCTCAAATCATGAGATTGACGAAGTTGCTCGCATTGTGAGAGAGAAGGACTTGAATGCACTGCGAGCACGCGGTGGTGTTGATGCTGTTTCAACACCTCTCAAGTCTCACTCTGAGAATCATGCTGACGATGGTGGTCAAGTTCCACAACTATCATTGAAGACTACCAAGCCTGTTTTCTTTCACTTCTTGTTGAAGGCTTGCAATCAGTACACAATCTTTTTCCTCCTAGGCTCAGCTGGGTTGCAATTTGCTATTGAATTTATGGAGCAAGGAGTCAAACAAGGGTGGCATGACGGTGTTGCCATACTTGTTACTGTGTTCCTACTCGTTGCTTTCCCTTCAGTTAGGAACTATCGCAACGAGTGGAAGATGGTGAAGCAGTTGATGGAGAGGAACAAATTTCGGGTGAATGTTGAAAGAAATGGAGAATCTAGGGCGGTTATGATATCTCATGTTTCGGTGGGTGATATAGTTCATTTGAAGGAGGGAGACCATGCTCCTGCTGATGGCTTGTTCATAGATCATGGTGCGAAACTGGTCTTGGATGAGGTATTGAGCCCCACAATTGATTTTGAAAACAACCCATTTGTGTTGTCTGGTTCAAAAGTTATTGAGGGCCAGGGTCGAATGATTGTGGCATCTGTTGGTGTCGATACAGCTTGTGGAGAGATGCTGAGCTTGGTGACTGAGGGTCATAATCCAAATAGGAAGACTCTGTTACAAGCTTTGATGGACGAACCATATACTTATATGGAGTATCTTGCGTGTTGTGTCTCGGTGCTAATTGCTGTCGTGGTGCTAATACGGTTAGTACTTTTCAGGAAGCATGACAAGTACAATGACAGGCCAGACCTGAAAGGGGAGGTTTCAATGAACTTGCTGATGAAGATTTTTGAGAAAATATACTTGAAAACTCAAGGAACCGTCTCCACTTTGGTGAGTGTTCTTGCTACTGCGGTAATAGGGATACAACATGGAATGCCCTTTGTGATTTCGCTTGCAATTTGTCAATGGAATAAGAAGGTGGTCCAAAATCGGGCAGATCCTCAGAATCTTTCAGCTTGTGTCACCATGGGCCTCGTAACGGTCATCTGCATTGAAACAACTGGTGAGAAAATTCGTAACAAGATGGAGGTTATGGACTTTTGGATACGTGAAAAGGATTTAACCAATGAAGTGGAGTCTGATCAAATTGAACAATTTGCTCTGAGAGGACTACATCAAGAGGTTTCTGCTACCTCAGAAAATAATTTGTTCATTTATTTGATCAAGAACAGATGGGGTGTCACTGACATGGAGGTATTGGATCGCACATTTATAACTCTGGAAGAGAGAAAATTGAGTTCTGATGAGAAATGTAGTGGCATCTTAGTGAGGAAAACAGAGAGCAGCGCAGAAGATATGCAGCTGCATATAAATGGAGATGCGTCAACAATCTTAGACATGTGTTCACATTATAATGATAAGACTGGGGAAAGTTCTATTATGGAAATTCAGAAGAGAAAGCTTAAGCAGGTCATTAAGAACATGGAGGAGAAGGGTCGAAGACCAATTGCATATGCTTATAAGAAAACAAATGTGAAAGAGTTTACAGAAAATGGGTTGACATTGTTGGCGCTAGTGGGAGTCAGACGCCCATATAAAGAAGAGCTTAAAATTGCAGTGGAAGCTTTCAGAAATGCTGGAAAAGAAATCAAGCTGGTTTCCGAGGATGAGCCCTCAATAGTGACTGCGCGAGCTTCTGATCTTGGAATCTTTAACCCTGGTATGGAAATTGCGGGCGAAGCTTTCAGAAGACTCAACTCCATGGAAAGACTAAATAAGGTGGATTTGATATCCGTGATGGGAAGTGCCCTTCCAAAGGACAAGCTTCTCATGGTGGAGCACTTAAAGAAAAAGGGTCACATAGTAGCGTTCTATGGAGGGCTAACCATAAAAGACACTCGTACTTTGATAGAAGCAGATATTGGAATCACAGAGGATATATGGAGCACTGAAATGGCCAGAGACAATGCTGATATTATAGTTAAGGATGGCTGCTTATGGTTCCCGAACTTGAAGTCTGGGAAATGTGCTTACCACAACATTCAGAACTTCTGTCAAATTCAGCTCACGATGATCATATCCGGGTTGCTAGTAACGTTAGTAGCAACGATGCATTCAGGGGACTCTCCATTGACTGCAATTCACTTGATTTGGGTGAACTTGATAATGTGCCTTCTAGGCAGCCAGATGATGGTAATGGAGTTAGAACGCCAGGAGCCACTTGCTCAAGAACCAGCCCCAAGGACTCAAGAACCGGCGCCAAGGACTCAGCCACTTATAACCCAAGCCATCTGGGGAAACATAGCCATTCAAGTTTCATACCAGGCTTCCACCTTGCTGGTCTTGCATTTCATGGGAAATGCAATAGCGAGCATGAACCAAGGCATCCGGGGTACCATGGTTTTCAATATTTACACCTTGTGTCAGGTCCTTAATCTGTTCAGGGCCATGGACCTAGTGAACAAGGAAGTCCTAAATGTTGTTCTTCACAGTTATTGCTTTTTGATGGCCTTGGGGGCTGTTATGGTCATGCAGGTGGTGATTGTTGAGTTTGGGAAAGGACTAGCCAGTGGTGTGAGGTTGGATGCAATACAGTGGGCATCCTGCTTCCTTCTTGCTGCTCTTTCATGGCCGTTTGATTGGGCCATAACTTCGCAGTTTCGAAGAGAAAATTTGGCATTGAGGAGAGCACCTATGGGGATGTCAAGATTTTACATTTGTGCTTCGTTGTTCCTCATTTTCTCTGTATCATATTGTTTCGAATCAGATTATGCACACACAACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase_C E1-E2_ATPase

Protein Analysis

1040

Amino Acids

116.98

Weight (kDa)

7.98

Isoelectric Point (pI)

35.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
E1-E2_ATPase	PF00122	232 - 325	2e-09	P-type ATPase actuator domain
Cation_ATPase	PF13246	524 - 647	8.7e-11	P-type ATPase, cytoplasmic domain N
Cation_ATPase_C	PF00689	821 - 994	1e-19	Cation transporting ATPase, C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008877)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g40950 FvH4_6g40950
malus_domestica	MD09G1122600.v1.1 MD09G1122800.v1.1 MD17G1113500.v1.1
prunus_persica	Prupe.3G200900_v2.0.a1
pyrus_communis	pycom09g04700 pycom09g04710 pycom17g10510
rosa_chinensis	RchiOBHm_Chr2g0156561 RchiOBHm_Chr2g0156581
rosa_laevigata	RLG00000020921
rosa_multiflora	Rmu_sc0011512.1_g000006
rosa_roxburghii	Rroxscaffold_2G00092940
rosa_rugosa	Rorug02G0454300
rosa_samantha	Rh2AG520100 Rh2BG532600 Rh2BG533100 Rh2CG505100 Rh2DG541500 Rh2DG541900
rosa_wichuraiana	Rw2G042880 Rw2G042890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	4 cut(s)	1610, 1749, 1857, 2615
AarI	CACCTGC	1 cut(s)	2860
Acc36I	ACCTGC	2 cut(s)	1795, 2860
Acc65I	GGTACC	1 cut(s)	2729
AccB1I	GGYRCC	2 cut(s)	2593, 2729
AccB7I	CCANNNNNTGG	1 cut(s)	2527
AccII	CGCG	2 cut(s)	360, 2026
AccIII	TCCGGA	1 cut(s)	122
AciI	CCGC	8 cut(s)	79, 142, 278, 285, 360, 728, 1247, 2069
AclI	AACGTT	1 cut(s)	2432
AclWI	GGATC	4 cut(s)	210, 237, 1328, 1605
AcoI	YGGCCR	2 cut(s)	2292, 2966
AcsI	RAATTY	6 cut(s)	548, 689, 1407, 1782, 2394, 3007
AcuI	CTGAAG	2 cut(s)	54, 615
AcyI	GRCGYC	2 cut(s)	1924, 2594
AdeI	CACNNNGTG	2 cut(s)	362, 2757
AfaI	GTAC	6 cut(s)	13, 500, 1104, 1127, 2239, 2731
AfiI	CCNNNNNNNGG	7 cut(s)	797, 1150, 1327, 1375, 2059, 2152, 2527
AflII	CTTAAG	2 cut(s)	68, 1799
AflIII	ACRYGT	1 cut(s)	1734
AhdI	GACNNNNNGTC	1 cut(s)	981
AjnI	CCWGG	4 cut(s)	909, 2053, 2547, 2658
AjuI	GAANNNNNNNTTGG	6 cut(s)	449, 481, 815, 847, 2241, 2273
AleI	CACNNNNGTG	1 cut(s)	1226
Alw21I	GWGCWC	4 cut(s)	358, 2178, 2285, 3028
Alw26I	GTCTC	6 cut(s)	196, 399, 774, 1069, 1222, 2292
AlwI	GGATC	4 cut(s)	210, 237, 1328, 1605
AlwNI	CAGNNNCTG	1 cut(s)	287
Aor13HI	TCCGGA	1 cut(s)	122
ApeKI	GCWGC	8 cut(s)	236, 287, 1680, 1696, 1699, 2328, 2517, 2954
ApoI	RAATTY	6 cut(s)	548, 689, 1407, 1782, 2394, 3007
ArsI	GACNNNNNNTTYG	2 cut(s)	2336, 2368
Asp718I	GGTACC	1 cut(s)	2729
AspA2I	CCTAGG	1 cut(s)	517
AspLEI	GCGC	6 cut(s)	120, 259, 1685, 1909, 2026, 2596
AspS9I	GGNCC	9 cut(s)	154, 208, 907, 1318, 1366, 2764, 2781, 2788, 2979
AsuC2I	CCSGG	2 cut(s)	2419, 2726
AsuII	TTCGAA	2 cut(s)	2998, 3096
AvaII	GGWCC	4 cut(s)	208, 1318, 2764, 2788
AvrII	CCTAGG	1 cut(s)	517
BaeGI	GKGCMC	1 cut(s)	2146
BaeI	ACNNNNGTAYC	2 cut(s)	2721, 2754
BalI	TGGCCA	1 cut(s)	2294
BanI	GGYRCC	2 cut(s)	2593, 2729
BanII	GRGCYC	2 cut(s)	851, 2010
BbsI	GAAGAC	4 cut(s)	455, 1007, 1843, 2092
Bbv12I	GWGCWC	4 cut(s)	358, 2178, 2285, 3028
BbvI	GCAGC	8 cut(s)	223, 274, 1686, 1692, 1708, 2315, 2529, 2941
BceAI	ACGGC	1 cut(s)	2953
BciT130I	CCWGG	4 cut(s)	911, 2055, 2549, 2660
BciVI	GTATCC	2 cut(s)	1251, 1434
BclI	TGATCA	3 cut(s)	1477, 1557, 2409
BcnI	CCSGG	2 cut(s)	2419, 2726
BcoDI	GTCTC	6 cut(s)	196, 399, 774, 1069, 1222, 2292
BfaI	CTAG	7 cut(s)	518, 723, 1910, 2426, 2513, 2792, 2900
BfoI	RGCGCY	4 cut(s)	121, 260, 1910, 2597
BfrI	CTTAAG	2 cut(s)	68, 1799
BfuAI	ACCTGC	2 cut(s)	1795, 2860
BfuI	GTATCC	2 cut(s)	1251, 1434
BglI	GCCNNNNNGGC	2 cut(s)	2514, 2852
BlnI	CCTAGG	1 cut(s)	517
BlpI	GCTNAGC	2 cut(s)	523, 965
BmcAI	AGTACT	1 cut(s)	1104
Bme1390I	CCNGG	6 cut(s)	911, 2055, 2419, 2549, 2660, 2726
Bme18I	GGWCC	4 cut(s)	208, 1318, 2764, 2788
BmeRI	GACNNNNNGTC	1 cut(s)	981
BmgT120I	GGNCC	9 cut(s)	154, 208, 907, 1318, 1366, 2764, 2781, 2788, 2979
BmiI	GGNNCC	7 cut(s)	127, 156, 1213, 2339, 2553, 2595, 2731
BmrFI	CCNGG	6 cut(s)	911, 2055, 2419, 2549, 2660, 2726
BmrI	ACTGGG	1 cut(s)	1770
BmuI	ACTGGG	1 cut(s)	1770
BpiI	GAAGAC	4 cut(s)	455, 1007, 1843, 2092
Bpu1102I	GCTNAGC	2 cut(s)	523, 965
Bpu14I	TTCGAA	2 cut(s)	2998, 3096
BpuEI	CTTGAG	4 cut(s)	374, 1191, 2547, 2568
BpuMI	CCSGG	2 cut(s)	2419, 2726
BsaAI	YACGTR	1 cut(s)	1445
BsaHI	GRCGYC	2 cut(s)	1924, 2594
BsaI	GGTCTC	1 cut(s)	774
BsaWI	WCCGGW	1 cut(s)	122
Bsc4I	CCNNNNNNNGG	7 cut(s)	797, 1150, 1327, 1375, 2059, 2152, 2527
Bse118I	RCCGGY	1 cut(s)	2590
Bse1I	ACTGG	4 cut(s)	831, 1402, 1765, 2904
BseAI	TCCGGA	1 cut(s)	122
BseBI	CCWGG	4 cut(s)	911, 2055, 2549, 2660
BseGI	GGATG	7 cut(s)	841, 2008, 2329, 2721, 2926, 2936, 3042
BseLI	CCNNNNNNNGG	7 cut(s)	797, 1150, 1327, 1375, 2059, 2152, 2527
BseMII	CTCAG	9 cut(s)	226, 393, 537, 956, 969, 1352, 1490, 1545, 2618
BseNI	ACTGG	4 cut(s)	831, 1402, 1765, 2904
BseRI	GAGGAG	2 cut(s)	1838, 3034
BseSI	GKGCMC	1 cut(s)	2146
BseXI	GCAGC	8 cut(s)	223, 274, 1686, 1692, 1708, 2315, 2529, 2941
BseYI	CCCAGC	1 cut(s)	527
Bsh1236I	CGCG	2 cut(s)	360, 2026
BshNI	GGYRCC	2 cut(s)	2593, 2729
BsiHKAI	GWGCWC	4 cut(s)	358, 2178, 2285, 3028
BsiSI	CCGG	4 cut(s)	123, 2418, 2591, 2725
BslFI	GGGAC	1 cut(s)	2471
BslI	CCNNNNNNNGG	7 cut(s)	797, 1150, 1327, 1375, 2059, 2152, 2527
BsmAI	GTCTC	6 cut(s)	196, 399, 774, 1069, 1222, 2292
BsmBI	CGTCTC	1 cut(s)	1222
BsmFI	GGGAC	1 cut(s)	2471
BsmI	GAATGC	3 cut(s)	349, 1275, 2449
Bso31I	GGTCTC	1 cut(s)	774
Bsp119I	TTCGAA	2 cut(s)	2998, 3096
Bsp1286I	GDGCHC	7 cut(s)	358, 851, 2010, 2146, 2178, 2285, 3028
Bsp13I	TCCGGA	1 cut(s)	122
Bsp143I	GATC	9 cut(s)	215, 229, 811, 1333, 1477, 1557, 1597, 2035, 2409
Bsp1720I	GCTNAGC	2 cut(s)	523, 965
Bsp19I	CCATGG	4 cut(s)	1362, 2097, 2733, 2784
BspACI	CCGC	8 cut(s)	79, 142, 278, 285, 360, 728, 1247, 2069
BspCNI	CTCAG	9 cut(s)	225, 394, 536, 957, 970, 1351, 1491, 1544, 2617
BspEI	TCCGGA	1 cut(s)	122
BspFNI	CGCG	2 cut(s)	360, 2026
BspHI	TCATGA	1 cut(s)	298
BspLI	GGNNCC	7 cut(s)	127, 156, 1213, 2339, 2553, 2595, 2731
BspMI	ACCTGC	2 cut(s)	1795, 2860
BspPI	GGATC	4 cut(s)	210, 237, 1328, 1605
BspQI	GCTCTTC	1 cut(s)	1932
BspT104I	TTCGAA	2 cut(s)	2998, 3096
BspT107I	GGYRCC	2 cut(s)	2593, 2729
BspTI	CTTAAG	2 cut(s)	68, 1799
BspTNI	GGTCTC	1 cut(s)	774
BsrFI	RCCGGY	1 cut(s)	2590
BsrI	ACTGG	4 cut(s)	831, 1402, 1765, 2904
BssAI	RCCGGY	1 cut(s)	2590
BssMI	GATC	9 cut(s)	215, 229, 811, 1333, 1477, 1557, 1597, 2035, 2409
BssNI	GRCGYC	2 cut(s)	1924, 2594
BssT1I	CCWWGG	9 cut(s)	517, 1362, 2097, 2576, 2597, 2716, 2733, 2784, 2847
Bst2UI	CCWGG	4 cut(s)	911, 2055, 2549, 2660
Bst4CI	ACNGT	9 cut(s)	11, 171, 587, 607, 1098, 1216, 1378, 2828, 2931
Bst6I	CTCTTC	4 cut(s)	1614, 1784, 1932, 2995
BstACI	GRCGYC	2 cut(s)	1924, 2594
BstAFI	CTTAAG	2 cut(s)	68, 1799
BstBAI	YACGTR	1 cut(s)	1445
BstBI	TTCGAA	2 cut(s)	2998, 3096
BstDSI	CCRYGG	4 cut(s)	1362, 2097, 2733, 2784
BstENI	CCTNNNNNAGG	1 cut(s)	2150
BstF5I	GGATG	7 cut(s)	841, 2008, 2329, 2721, 2926, 2936, 3042
BstFNI	CGCG	2 cut(s)	360, 2026
BstH2I	RGCGCY	4 cut(s)	121, 260, 1910, 2597
BstHHI	GCGC	6 cut(s)	120, 259, 1685, 1909, 2026, 2596
BstKTI	GATC	9 cut(s)	218, 232, 814, 1336, 1480, 1560, 1600, 2038, 2412
BstMAI	GTCTC	6 cut(s)	196, 399, 774, 1069, 1222, 2292
BstMBI	GATC	9 cut(s)	215, 229, 811, 1333, 1477, 1557, 1597, 2035, 2409
BstMWI	GCNNNNNNNGC	6 cut(s)	353, 1958, 2075, 2514, 2680, 2852
BstNI	CCWGG	4 cut(s)	911, 2055, 2549, 2660
BstNSI	RCATGY	1 cut(s)	1738
BstSCI	CCNGG	6 cut(s)	909, 2053, 2417, 2547, 2658, 2724
BstSLI	GKGCMC	1 cut(s)	2146
BstUI	CGCG	2 cut(s)	360, 2026
BstV1I	GCAGC	8 cut(s)	223, 274, 1686, 1692, 1708, 2315, 2529, 2941
BstV2I	GAAGAC	4 cut(s)	455, 1007, 1843, 2092
BstX2I	RGATCY	2 cut(s)	215, 1333
BstXI	CCANNNNNNTGG	2 cut(s)	1468, 2674
BstYI	RGATCY	2 cut(s)	215, 1333
BsuI	GTATCC	2 cut(s)	1251, 1434
BtgI	CCRYGG	4 cut(s)	1362, 2097, 2733, 2784
BtsCI	GGATG	7 cut(s)	841, 2008, 2329, 2721, 2926, 2936, 3042
BtsI	GCAGTG	2 cut(s)	347, 1959
BtsIMutI	CAGTG	6 cut(s)	347, 1578, 1959, 2283, 2911, 2936
BveI	ACCTGC	2 cut(s)	1795, 2860
CaiI	CAGNNNCTG	1 cut(s)	287
CciI	TCATGA	1 cut(s)	298
CfoI	GCGC	6 cut(s)	120, 259, 1685, 1909, 2026, 2596
Cfr10I	RCCGGY	1 cut(s)	2590
Cfr13I	GGNCC	9 cut(s)	154, 208, 907, 1318, 1366, 2764, 2781, 2788, 2979
CseI	GACGC	2 cut(s)	1707, 1932
Csp6I	GTAC	6 cut(s)	12, 499, 1103, 1126, 2238, 2730
CviQI	GTAC	6 cut(s)	12, 499, 1103, 1126, 2238, 2730
DinI	GGCGCC	1 cut(s)	2595
DpnI	GATC	9 cut(s)	217, 231, 813, 1335, 1479, 1559, 1599, 2037, 2411
DpnII	GATC	9 cut(s)	215, 229, 811, 1333, 1477, 1557, 1597, 2035, 2409
DraIII	CACNNNGTG	2 cut(s)	362, 2757
DriI	GACNNNNNGTC	1 cut(s)	981
EaeI	YGGCCR	2 cut(s)	2292, 2966
Eam1104I	CTCTTC	4 cut(s)	1614, 1784, 1932, 2995
Eam1105I	GACNNNNNGTC	1 cut(s)	981
EarI	CTCTTC	4 cut(s)	1614, 1784, 1932, 2995
Eco130I	CCWWGG	9 cut(s)	517, 1362, 2097, 2576, 2597, 2716, 2733, 2784, 2847
Eco147I	AGGCCT	1 cut(s)	29
Eco24I	GRGCYC	2 cut(s)	851, 2010
Eco31I	GGTCTC	1 cut(s)	774
Eco32I	GATATC	2 cut(s)	738, 2127
Eco47I	GGWCC	4 cut(s)	208, 1318, 2764, 2788
Eco57I	CTGAAG	2 cut(s)	54, 615
EcoNI	CCTNNNNNAGG	1 cut(s)	2150
EcoO109I	RGGNCCY	3 cut(s)	154, 208, 2764
EcoRII	CCWGG	4 cut(s)	909, 2053, 2547, 2658
EcoRV	GATATC	2 cut(s)	738, 2127
EcoT14I	CCWWGG	9 cut(s)	517, 1362, 2097, 2576, 2597, 2716, 2733, 2784, 2847
EcoT22I	ATGCAT	1 cut(s)	2451
EcoT38I	GRGCYC	2 cut(s)	851, 2010
EgeI	GGCGCC	1 cut(s)	2595
EheI	GGCGCC	1 cut(s)	2595
ErhI	CCWWGG	9 cut(s)	517, 1362, 2097, 2576, 2597, 2716, 2733, 2784, 2847
Esp3I	CGTCTC	1 cut(s)	1222
FalI	AAGNNNNNCTT	2 cut(s)	1926, 1958
FaqI	GGGAC	1 cut(s)	2471
FauI	CCCGC	1 cut(s)	2062
FauNDI	CATATG	1 cut(s)	1849
FbaI	TGATCA	3 cut(s)	1477, 1557, 2409
FokI	GGATG	7 cut(s)	848, 2015, 2336, 2708, 2923, 2933, 3049
FriOI	GRGCYC	2 cut(s)	851, 2010
FspBI	CTAG	7 cut(s)	518, 723, 1910, 2426, 2513, 2792, 2900
GlaI	GCGC	6 cut(s)	119, 258, 1684, 1908, 2025, 2595
GsaI	CCCAGC	1 cut(s)	531
HaeII	RGCGCY	4 cut(s)	121, 260, 1910, 2597
HapII	CCGG	4 cut(s)	123, 2418, 2591, 2725
HgaI	GACGC	2 cut(s)	1707, 1932
HhaI	GCGC	6 cut(s)	120, 259, 1685, 1909, 2026, 2596
Hin1I	GRCGYC	2 cut(s)	1924, 2594
Hin6I	GCGC	6 cut(s)	118, 257, 1683, 1907, 2024, 2594
HinP1I	GCGC	6 cut(s)	118, 257, 1683, 1907, 2024, 2594
HincII	GTYRAC	2 cut(s)	1722, 1896
HindII	GTYRAC	2 cut(s)	1722, 1896
HindIII	AAGCTT	5 cut(s)	1014, 1796, 1959, 2076, 2159
HpaII	CCGG	4 cut(s)	123, 2418, 2591, 2725
Hpy166II	GTNNAC	7 cut(s)	501, 1722, 1742, 1881, 1896, 2494, 2797
Hpy8I	GTNNAC	7 cut(s)	501, 1722, 1742, 1881, 1896, 2494, 2797
HpyCH4III	ACNGT	9 cut(s)	11, 171, 587, 607, 1098, 1216, 1378, 2828, 2931
HpyCH4IV	ACGT	2 cut(s)	1444, 2432
HpyF10VI	GCNNNNNNNGC	6 cut(s)	353, 1958, 2075, 2514, 2680, 2852
HpySE526I	ACGT	2 cut(s)	1444, 2432
Hsp92I	GRCGYC	2 cut(s)	1924, 2594
HspAI	GCGC	6 cut(s)	118, 257, 1683, 1907, 2024, 2594
KasI	GGCGCC	1 cut(s)	2593
Kpn2I	TCCGGA	1 cut(s)	122
KpnI	GGTACC	1 cut(s)	2733
Ksp22I	TGATCA	3 cut(s)	1477, 1557, 2409
Kzo9I	GATC	9 cut(s)	215, 229, 811, 1333, 1477, 1557, 1597, 2035, 2409
LguI	GCTCTTC	1 cut(s)	1932
LmnI	GCTCC	6 cut(s)	125, 556, 793, 2173, 2280, 2551
Lsp1109I	GCAGC	8 cut(s)	223, 274, 1686, 1692, 1708, 2315, 2529, 2941
MaeI	CTAG	7 cut(s)	518, 723, 1910, 2426, 2513, 2792, 2900
MaeII	ACGT	2 cut(s)	1444, 2432
MalI	GATC	9 cut(s)	217, 231, 813, 1335, 1479, 1559, 1599, 2037, 2411
MboI	GATC	9 cut(s)	215, 229, 811, 1333, 1477, 1557, 1597, 2035, 2409
MfeI	CAATTG	2 cut(s)	855, 1842
MflI	RGATCY	2 cut(s)	215, 1333
MhlI	GDGCHC	7 cut(s)	358, 851, 2010, 2146, 2178, 2285, 3028
MlsI	TGGCCA	1 cut(s)	2294
MluNI	TGGCCA	1 cut(s)	2294
Mly113I	GGCGCC	1 cut(s)	2594
MlyI	GAGTC	9 cut(s)	46, 573, 997, 1481, 1926, 2082, 2453, 2575, 2596
MmeI	TCCRAC	1 cut(s)	2898
Mox20I	TGGCCA	1 cut(s)	2294
Mph1103I	ATGCAT	1 cut(s)	2451
MroI	TCCGGA	1 cut(s)	122
MscI	TGGCCA	1 cut(s)	2294
MseI	TTAA	9 cut(s)	69, 1457, 1800, 1812, 1944, 2049, 2180, 2319, 2769
MslI	CAYNNNNRTG	8 cut(s)	585, 1226, 1583, 1661, 1707, 1749, 2288, 2870
Msp20I	TGGCCA	1 cut(s)	2294
MspA1I	CMGCKG	4 cut(s)	81, 287, 527, 1699
MspCI	CTTAAG	2 cut(s)	68, 1799
MspI	CCGG	4 cut(s)	123, 2418, 2591, 2725
MspR9I	CCNGG	6 cut(s)	911, 2055, 2419, 2549, 2660, 2726
MunI	CAATTG	2 cut(s)	855, 1842
Mva1269I	GAATGC	3 cut(s)	349, 1275, 2449
MvaI	CCWGG	4 cut(s)	911, 2055, 2549, 2660
MvnI	CGCG	2 cut(s)	360, 2026
MwoI	GCNNNNNNNGC	6 cut(s)	353, 1958, 2075, 2514, 2680, 2852
NarI	GGCGCC	1 cut(s)	2594
NciI	CCSGG	2 cut(s)	2419, 2726
NcoI	CCATGG	4 cut(s)	1362, 2097, 2733, 2784
NdeI	CATATG	1 cut(s)	1849
NdeII	GATC	9 cut(s)	215, 229, 811, 1333, 1477, 1557, 1597, 2035, 2409
NlaIV	GGNNCC	7 cut(s)	127, 156, 1213, 2339, 2553, 2595, 2731
NmuCI	GTSAC	5 cut(s)	973, 1357, 1576, 2017, 2192
NsiI	ATGCAT	1 cut(s)	2451
NspI	RCATGY	1 cut(s)	1738
NspV	TTCGAA	2 cut(s)	2998, 3096
OliI	CACNNNNGTG	1 cut(s)	1226
PagI	TCATGA	1 cut(s)	298
PaqCI	CACCTGC	1 cut(s)	2860
PceI	AGGCCT	1 cut(s)	29
PciI	ACATGT	1 cut(s)	1734
PciSI	GCTCTTC	1 cut(s)	1932
PctI	GAATGC	3 cut(s)	349, 1275, 2449
PfeI	GAWTC	6 cut(s)	406, 719, 1342, 2043, 2262, 3098
PflMI	CCANNNNNTGG	1 cut(s)	2527
PleI	GAGTC	9 cut(s)	46, 572, 997, 1480, 1925, 2082, 2453, 2575, 2596
PluTI	GGCGCC	1 cut(s)	2597
PpsI	GAGTC	9 cut(s)	46, 572, 997, 1480, 1925, 2082, 2453, 2575, 2596
Ppu21I	YACGTR	1 cut(s)	1445
PpuMI	RGGWCCY	2 cut(s)	208, 2764
PscI	ACATGT	1 cut(s)	1734
PsiI	TTATAA	4 cut(s)	1610, 1749, 1857, 2615
Psp1406I	AACGTT	1 cut(s)	2432
Psp5II	RGGWCCY	2 cut(s)	208, 2764
Psp6I	CCWGG	4 cut(s)	909, 2053, 2547, 2658
PspFI	CCCAGC	1 cut(s)	527
PspGI	CCWGG	4 cut(s)	909, 2053, 2547, 2658
PspN4I	GGNNCC	7 cut(s)	127, 156, 1213, 2339, 2553, 2595, 2731
PspPI	GGNCC	9 cut(s)	154, 208, 907, 1318, 1366, 2764, 2781, 2788, 2979
PspPPI	RGGWCCY	2 cut(s)	208, 2764
PstNI	CAGNNNCTG	1 cut(s)	287
PsuI	RGATCY	2 cut(s)	215, 1333
PvuII	CAGCTG	2 cut(s)	527, 1699
RsaI	GTAC	6 cut(s)	13, 500, 1104, 1127, 2239, 2731
RsaNI	GTAC	6 cut(s)	12, 499, 1103, 1126, 2238, 2730
RseI	CAYNNNNRTG	8 cut(s)	585, 1226, 1583, 1661, 1707, 1749, 2288, 2870
SapI	GCTCTTC	1 cut(s)	1932
SaqAI	TTAA	9 cut(s)	69, 1457, 1800, 1812, 1944, 2049, 2180, 2319, 2769
Sau3AI	GATC	9 cut(s)	215, 229, 811, 1333, 1477, 1557, 1597, 2035, 2409
Sau96I	GGNCC	9 cut(s)	154, 208, 907, 1318, 1366, 2764, 2781, 2788, 2979
ScaI	AGTACT	1 cut(s)	1104
SchI	GAGTC	9 cut(s)	46, 573, 997, 1481, 1926, 2082, 2453, 2575, 2596
ScrFI	CCNGG	6 cut(s)	911, 2055, 2419, 2549, 2660, 2726
SduI	GDGCHC	7 cut(s)	358, 851, 2010, 2146, 2178, 2285, 3028
SfoI	GGCGCC	1 cut(s)	2595
SfuI	TTCGAA	2 cut(s)	2998, 3096
SinI	GGWCC	4 cut(s)	208, 1318, 2764, 2788
SmiMI	CAYNNNNRTG	8 cut(s)	585, 1226, 1583, 1661, 1707, 1749, 2288, 2870
SmlI	CTYRAG	6 cut(s)	68, 389, 1206, 1799, 2562, 2583
SmoI	CTYRAG	6 cut(s)	68, 389, 1206, 1799, 2562, 2583
SseBI	AGGCCT	1 cut(s)	29
SsiI	CCGC	8 cut(s)	79, 142, 278, 285, 360, 728, 1247, 2069
SspDI	GGCGCC	1 cut(s)	2593
SspI	AATATT	1 cut(s)	2746
SspMI	CTAG	7 cut(s)	518, 723, 1910, 2426, 2513, 2792, 2900
StuI	AGGCCT	1 cut(s)	29
StyD4I	CCNGG	6 cut(s)	909, 2053, 2417, 2547, 2658, 2724
StyI	CCWWGG	9 cut(s)	517, 1362, 2097, 2576, 2597, 2716, 2733, 2784, 2847
TaaI	ACNGT	9 cut(s)	11, 171, 587, 607, 1098, 1216, 1378, 2828, 2931
TaiI	ACGT	2 cut(s)	1447, 2435
TaqI	TCGA	5 cut(s)	916, 942, 1834, 2998, 3096
TatI	WGTACW	3 cut(s)	498, 1102, 1125
TauI	GCSGC	3 cut(s)	81, 280, 287
TfiI	GAWTC	6 cut(s)	406, 719, 1342, 2043, 2262, 3098
Tru1I	TTAA	9 cut(s)	69, 1457, 1800, 1812, 1944, 2049, 2180, 2319, 2769
Tru9I	TTAA	9 cut(s)	69, 1457, 1800, 1812, 1944, 2049, 2180, 2319, 2769
TscAI	CASTG	6 cut(s)	354, 1585, 1959, 2290, 2911, 2936
TseFI	GTSAC	5 cut(s)	973, 1357, 1576, 2017, 2192
TseI	GCWGC	8 cut(s)	236, 287, 1680, 1696, 1699, 2328, 2517, 2954
Tsp45I	GTSAC	5 cut(s)	973, 1357, 1576, 2017, 2192
TspGWI	ACGGA	1 cut(s)	2119
TspRI	CASTG	6 cut(s)	354, 1585, 1959, 2290, 2911, 2936
Van91I	CCANNNNNTGG	1 cut(s)	2527
Vha464I	CTTAAG	2 cut(s)	68, 1799
VpaK11BI	GGWCC	4 cut(s)	208, 1318, 2764, 2788
XagI	CCTNNNNNAGG	1 cut(s)	2150
XapI	RAATTY	6 cut(s)	548, 689, 1407, 1782, 2394, 3007
XceI	RCATGY	1 cut(s)	1738
XmaJI	CCTAGG	1 cut(s)	517
XspI	CTAG	7 cut(s)	518, 723, 1910, 2426, 2513, 2792, 2900
ZrmI	AGTACT	1 cut(s)	1104
Zsp2I	ATGCAT	1 cut(s)	2451

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.