Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0008877

Physical Location & Seq

Genomic Coordinates Forward (+)

69279628 .. 69283233

Gene Structure 3606 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G042890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3108 bp

ATGCCAAACAGTACCAATGGTGATGAGGCCTCTGAAGGCATCAGCAACCCGACTCTTACTACTGAACTTAAGCAGAGCCGCTGGTATAGATACTATGTTATTGTGGTTTTCATCTGGCGCTCCGGAACCAAGCCACGCCTCCGCAGAGCAAAGGCCCCTTATCATCAACGGTTTCTGAAAAAGTTTGCTCGCCTTGATGTGAGACAGGACCTCAGATCCTACTTCAAGGATCGTGCTGCCTATATACCTTTGTTAGCGCCAACAACACCAACAACGCCGCCAGCCGCTGCCTCAAATCATGAGATTGACGAGGTTGCTCGCATTGTGAGAGAGAAGGACTTGAATGCACTGCGAGCACGCGGTGGTGTTGATGCTGTTTCAACACCTCTCAAGTCTCACTCTGAGAATCATGCTGACGATGGTGGTCAAGTTCCACAACTATCATTGAAGACTACCAAGCCTGTTTTCTTTCACTTCTTGTTGAAGGCTTGCAATCAGTACACAATCTTTTTCCTCCTAGGCTCAGCTGGGTTGCAATTTGCTATTGAATTTATGGAGCAAGGAGTCAAACAAGGGTGGCATGACGGTGTTGCCATACTTGTTACTGTGTTCCTACTCGTTGCTTTCCCTTCAGTTAGGAACTATCGCAACGAGTGGAAGATGGTGAAGCAGTTGATGGAGAGGAACAAATTTCGGGTGAATGTTGAAAGAAATGGAGAATCTAGGGCGGTTATGATATCTCATGTTTCGGTGGGTGATATAGTTCATTTGAAGGAGGGAGACCATGCTCCTGCTGATGGCTTGTTCATAGATCATGGTGCGAAACTGGTCTTGGATGAGGTATTGAGCCCCACAATTGATTTTGAAAACAACCCATTTGTGTTGTCTGGTTCAAAAGTTACTAAGGGCCAGGGTCGAATGATTGTGGCATCTGTTGGTGTCGATACAGCTTGTGGAGAGATGCTGAGCTTGGTGACTGAGGATCATAATCCAAATAGGAAGACTCTGTTACAAGGTTTGATGGACGAACCATATACTTATATGGAGTATCTTGCGTGTTGTGTCTCGGTGCTAATTGCTGTCGTGGTGCTAATACGGTTAGTACTTTTCAGGAAGCATGACAAGTACAATGACAGGCCAGACCTGAAAGGGGAGGTTTCAATGAACTTGCTGATGAAGATTTTTGAGAAAATATACTTGAAAACTCAAGGAACCGTCTCCACTTTGGTGAGTGTTCTTGCTACTGTGGTAATAGGGATACAACATGGAATGCCCTTTGTGATTTCGCTTGCAATTTGTCAATGGAATAAGAAGGTGGTCCAAAATCGGGCAGATCCTCAGAATCTTTCAGCTTGTGTCACCATGGGCCTCGTAACGGTCATCTGCATTGAAACAACTGGTGAGAAAATTCGTAACAAGATGGAGGTTATGGACTTTTGGATACGTGAAAAGGATTTAACCAATGAAGTGGAGTCTGATGAAATTGAACAATTTGCTCTGAGAGGACTACATCAAGAGGTTTCTGCTACCTCAGAAAATAATTTGTTCATTTATTTGATCAAGAACAGATGGGGTGTCACTGACATGGAGGTATTGGATCGCACATTTATAACTCTGGAAGAGAGAAAATTGAGTTCTGATGAGAAATGTAGTGGCATCTTAGTGAGGAAAACAGAGAGCAGCGCAGAAGATATGCAGCTGCATATAAATGGAGATGCGTCAACAATTTTAGACATGTGTTCACATTCTATTATGGAAATTCAGAAGAGAAAGCTTAAGCAGGTCATTAAGAACATGGAGGAGAAGGGTCGAAGACCAATTGCATATGCTTATAAGAAAACAAATGTGAAAGAGTTTACAGAAAATGGGTTGACATTGTTGGCACTAGTGGGAGTCAGACGCCCATATCAAGAAGAGCTTAAAATTGCAGTGGAAGCTTTCAGAAATGCTGGAAAAGAAATCAAGCTGGTTTCCGAGGATGAGCCCTCAATAGTGACTGCGCGAGCTTCTGATCTTGGAATCTTTAACCCTGGTCGTGGTGATATGGAAATTCCGGGCGAAGCTTTCAGAAGACTCGACTCCATGGAAAGACTAAATAAGGTGGATTCGATATCCGTGATGGGAAGTGCCCTCCCAAAGGACAAGCTTCTCATGGTGGAGCACTTAAAGAAAAAGGGTCACATAGTAGCGTTCTATGGAGGGCTAACCATAAAAGACACTCGTACTTTGATAGAAGCAGATATTGGAATCACAGAGGATATACGAAGCACTGAAATGGCCAGAGACAATGCTGATATTATAGTTAAGGATGGCTGCTCATGGTTCCTGAACTTGAAGTCTGGGAAATGTGCTTACCACAACATTCAGAACTTCTGTCAAATTCAGCTCACGGCTTGCATATCCGGGTTGCTAGTAACGTTAGTAGCAACGATGCATTCAGGGGACTCTCCATTGACCGCAATTCACTTGATTTGGGTGAACTTGATAATGTGCCTTCTAGGCAGCCTAATGATGGTAATGGAGTTAGAACGCCAGGAGCCACTTGCACAAGAACCAGCGCCAAGGACTCAAGAACCGGCGCCAAGGACTCAGCCACTTATAACCCAAGCCATCTGGGGAAACATAGCCATTCAAGTTTCATACCAGGCTTCCATCTTGCTGGTCTTGCATTTCATGGAAAATGCAATAGCGAGCATGAACCAAGGCATCCGGGGTACCATGGTTTTCAATATTTACACCTTGTGTCAGGTCCTTAATCTGTTCAGGGCCATGGACCTAGTGAACAAGGAAGTCCTAAATGTTGTTCTTCACAGCTATTGCTTTTTGATGGCCTTGGGGGCTGTTATGGTCATGCAGGTGGTGATTGTTGAGTTTGGGAAAGGACTAGCCAGTGGTGTGAGGTTGGATGCAATACAGTGGGCATCCTGCTTCCTTCTTGCTGCTCTTTCATGGCCGTTTGATTGGGCCATAACTACGCAGTTTCGAAGAGAAAATTTGGCATTGAGGAGAGCACCTATGGGGATGTCAAGATTTTACATTTGTGCTTCGTTGTTCCTCATTTTCTCTGTATCATATTGTTTCGAATCAGATTATGCACACACAACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase_C E1-E2_ATPase

Protein Analysis

1035

Amino Acids

116.45

Weight (kDa)

7.77

Isoelectric Point (pI)

35.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
E1-E2_ATPase	PF00122	232 - 325	8.3e-10	P-type ATPase actuator domain
Cation_ATPase	PF13246	524 - 639	9.1e-07	P-type ATPase, cytoplasmic domain N
Cation_ATPase_C	PF00689	816 - 989	5.5e-20	Cation transporting ATPase, C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0008877)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g40950 FvH4_6g40950
malus_domestica	MD09G1122600.v1.1 MD09G1122800.v1.1 MD17G1113500.v1.1
prunus_persica	Prupe.3G200900_v2.0.a1
pyrus_communis	pycom09g04700 pycom09g04710 pycom17g10510
rosa_chinensis	RchiOBHm_Chr2g0156561 RchiOBHm_Chr2g0156581
rosa_laevigata	RLG00000020921
rosa_multiflora	Rmu_sc0011512.1_g000006
rosa_roxburghii	Rroxscaffold_2G00092940
rosa_rugosa	Rorug02G0454300
rosa_samantha	Rh2AG520100 Rh2BG532600 Rh2BG533100 Rh2CG505100 Rh2DG541500 Rh2DG541900
rosa_wichuraiana	Rw2G042880 Rw2G042890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	1610, 1833, 2600
AarI	CACCTGC	1 cut(s)	2845
Acc36I	ACCTGC	2 cut(s)	1771, 2845
Acc65I	GGTACC	1 cut(s)	2714
AccB1I	GGYRCC	2 cut(s)	2578, 2714
AccII	CGCG	2 cut(s)	360, 2002
AccIII	TCCGGA	1 cut(s)	122
AciI	CCGC	7 cut(s)	79, 142, 278, 285, 360, 728, 2457
AclI	AACGTT	1 cut(s)	2417
AclWI	GGATC	5 cut(s)	210, 237, 990, 1328, 1605
AcoI	YGGCCR	2 cut(s)	2277, 2951
AcsI	RAATTY	7 cut(s)	548, 689, 1407, 1758, 2049, 2379, 2992
AcuI	CTGAAG	2 cut(s)	54, 615
AcyI	GRCGYC	2 cut(s)	1900, 2579
AdeI	CACNNNGTG	2 cut(s)	362, 2742
AfaI	GTAC	6 cut(s)	13, 500, 1104, 1127, 2224, 2716
AfiI	CCNNNNNNNGG	7 cut(s)	797, 1150, 1327, 1375, 2036, 2137, 2512
AflII	CTTAAG	2 cut(s)	68, 1775
AflIII	ACRYGT	1 cut(s)	1734
AhlI	ACTAGT	1 cut(s)	1885
AjnI	CCWGG	4 cut(s)	909, 2029, 2532, 2643
AjuI	GAANNNNNNNTTGG	6 cut(s)	449, 481, 815, 847, 2226, 2258
AleI	CACNNNNGTG	1 cut(s)	1226
Alw21I	GWGCWC	3 cut(s)	358, 2163, 3013
Alw26I	GTCTC	6 cut(s)	196, 399, 774, 1069, 1222, 2277
AlwI	GGATC	5 cut(s)	210, 237, 990, 1328, 1605
AlwNI	CAGNNNCTG	1 cut(s)	287
Aor13HI	TCCGGA	1 cut(s)	122
ApeKI	GCWGC	8 cut(s)	236, 287, 1680, 1696, 1699, 2313, 2502, 2939
ApoI	RAATTY	7 cut(s)	548, 689, 1407, 1758, 2049, 2379, 2992
Asp718I	GGTACC	1 cut(s)	2714
AspA2I	CCTAGG	1 cut(s)	517
AspLEI	GCGC	6 cut(s)	120, 259, 1685, 2002, 2560, 2581
AspS9I	GGNCC	9 cut(s)	154, 208, 907, 1318, 1366, 2749, 2766, 2773, 2964
AsuC2I	CCSGG	3 cut(s)	2055, 2404, 2711
AsuII	TTCGAA	2 cut(s)	2983, 3081
AvaII	GGWCC	4 cut(s)	208, 1318, 2749, 2773
AvrII	CCTAGG	1 cut(s)	517
BaeGI	GKGCMC	1 cut(s)	2131
BaeI	ACNNNNGTAYC	2 cut(s)	2706, 2739
BalI	TGGCCA	1 cut(s)	2279
BanI	GGYRCC	2 cut(s)	2578, 2714
BanII	GRGCYC	2 cut(s)	851, 1986
BbsI	GAAGAC	4 cut(s)	455, 1007, 1819, 2077
Bbv12I	GWGCWC	3 cut(s)	358, 2163, 3013
BbvI	GCAGC	8 cut(s)	223, 274, 1686, 1692, 1708, 2300, 2514, 2926
BceAI	ACGGC	2 cut(s)	2406, 2938
BciT130I	CCWGG	4 cut(s)	911, 2031, 2534, 2645
BciVI	GTATCC	2 cut(s)	1251, 1434
BclI	TGATCA	1 cut(s)	1557
BcnI	CCSGG	3 cut(s)	2055, 2404, 2711
BcoDI	GTCTC	6 cut(s)	196, 399, 774, 1069, 1222, 2277
BcuI	ACTAGT	1 cut(s)	1885
BfaI	CTAG	7 cut(s)	518, 723, 1886, 2411, 2498, 2777, 2885
BfoI	RGCGCY	4 cut(s)	121, 260, 2561, 2582
BfrI	CTTAAG	2 cut(s)	68, 1775
BfuAI	ACCTGC	2 cut(s)	1771, 2845
BfuI	GTATCC	2 cut(s)	1251, 1434
BglI	GCCNNNNNGGC	2 cut(s)	2499, 2837
BlnI	CCTAGG	1 cut(s)	517
BlpI	GCTNAGC	2 cut(s)	523, 965
BmcAI	AGTACT	1 cut(s)	1104
Bme1390I	CCNGG	7 cut(s)	911, 2031, 2055, 2404, 2534, 2645, 2711
Bme18I	GGWCC	4 cut(s)	208, 1318, 2749, 2773
BmgT120I	GGNCC	9 cut(s)	154, 208, 907, 1318, 1366, 2749, 2766, 2773, 2964
BmiI	GGNNCC	7 cut(s)	127, 156, 1213, 2324, 2538, 2580, 2716
BmrFI	CCNGG	7 cut(s)	911, 2031, 2055, 2404, 2534, 2645, 2711
BpiI	GAAGAC	4 cut(s)	455, 1007, 1819, 2077
Bpu1102I	GCTNAGC	2 cut(s)	523, 965
Bpu14I	TTCGAA	2 cut(s)	2983, 3081
BpuEI	CTTGAG	3 cut(s)	374, 1191, 2553
BpuMI	CCSGG	3 cut(s)	2055, 2404, 2711
BsaAI	YACGTR	1 cut(s)	1445
BsaBI	GATNNNNATC	1 cut(s)	987
BsaHI	GRCGYC	2 cut(s)	1900, 2579
BsaI	GGTCTC	1 cut(s)	774
BsaWI	WCCGGW	1 cut(s)	122
Bsc4I	CCNNNNNNNGG	7 cut(s)	797, 1150, 1327, 1375, 2036, 2137, 2512
Bse118I	RCCGGY	1 cut(s)	2575
Bse1I	ACTGG	3 cut(s)	831, 1402, 2889
Bse8I	GATNNNNATC	1 cut(s)	987
BseAI	TCCGGA	1 cut(s)	122
BseBI	CCWGG	4 cut(s)	911, 2031, 2534, 2645
BseGI	GGATG	7 cut(s)	841, 1984, 2314, 2706, 2911, 2921, 3027
BseJI	GATNNNNATC	1 cut(s)	987
BseLI	CCNNNNNNNGG	7 cut(s)	797, 1150, 1327, 1375, 2036, 2137, 2512
BseMII	CTCAG	9 cut(s)	226, 393, 537, 956, 969, 1352, 1490, 1545, 2603
BseNI	ACTGG	3 cut(s)	831, 1402, 2889
BseRI	GAGGAG	2 cut(s)	1814, 3019
BseSI	GKGCMC	1 cut(s)	2131
BseXI	GCAGC	8 cut(s)	223, 274, 1686, 1692, 1708, 2300, 2514, 2926
BseYI	CCCAGC	1 cut(s)	527
Bsh1236I	CGCG	2 cut(s)	360, 2002
BshNI	GGYRCC	2 cut(s)	2578, 2714
BsiHKAI	GWGCWC	3 cut(s)	358, 2163, 3013
BsiSI	CCGG	5 cut(s)	123, 2054, 2403, 2576, 2710
BslFI	GGGAC	1 cut(s)	2456
BslI	CCNNNNNNNGG	7 cut(s)	797, 1150, 1327, 1375, 2036, 2137, 2512
BsmAI	GTCTC	6 cut(s)	196, 399, 774, 1069, 1222, 2277
BsmBI	CGTCTC	1 cut(s)	1222
BsmFI	GGGAC	1 cut(s)	2456
BsmI	GAATGC	3 cut(s)	349, 1275, 2434
Bso31I	GGTCTC	1 cut(s)	774
Bsp119I	TTCGAA	2 cut(s)	2983, 3081
Bsp1286I	GDGCHC	6 cut(s)	358, 851, 1986, 2131, 2163, 3013
Bsp13I	TCCGGA	1 cut(s)	122
Bsp143I	GATC	8 cut(s)	215, 229, 811, 982, 1333, 1557, 1597, 2011
Bsp1720I	GCTNAGC	2 cut(s)	523, 965
Bsp19I	CCATGG	4 cut(s)	1362, 2082, 2718, 2769
BspACI	CCGC	7 cut(s)	79, 142, 278, 285, 360, 728, 2457
BspCNI	CTCAG	9 cut(s)	225, 394, 536, 957, 970, 1351, 1491, 1544, 2602
BspEI	TCCGGA	1 cut(s)	122
BspFNI	CGCG	2 cut(s)	360, 2002
BspHI	TCATGA	1 cut(s)	298
BspLI	GGNNCC	7 cut(s)	127, 156, 1213, 2324, 2538, 2580, 2716
BspMI	ACCTGC	2 cut(s)	1771, 2845
BspPI	GGATC	5 cut(s)	210, 237, 990, 1328, 1605
BspQI	GCTCTTC	1 cut(s)	1908
BspT104I	TTCGAA	2 cut(s)	2983, 3081
BspT107I	GGYRCC	2 cut(s)	2578, 2714
BspTI	CTTAAG	2 cut(s)	68, 1775
BspTNI	GGTCTC	1 cut(s)	774
BsrFI	RCCGGY	1 cut(s)	2575
BsrI	ACTGG	3 cut(s)	831, 1402, 2889
BssAI	RCCGGY	1 cut(s)	2575
BssMI	GATC	8 cut(s)	215, 229, 811, 982, 1333, 1557, 1597, 2011
BssNI	GRCGYC	2 cut(s)	1900, 2579
BssT1I	CCWWGG	9 cut(s)	517, 1362, 2082, 2561, 2582, 2701, 2718, 2769, 2832
Bst2UI	CCWGG	4 cut(s)	911, 2031, 2534, 2645
Bst4CI	ACNGT	9 cut(s)	11, 171, 587, 607, 1098, 1216, 1246, 1378, 2916
Bst6I	CTCTTC	4 cut(s)	1614, 1760, 1908, 2980
BstACI	GRCGYC	2 cut(s)	1900, 2579
BstAFI	CTTAAG	2 cut(s)	68, 1775
BstBAI	YACGTR	1 cut(s)	1445
BstBI	TTCGAA	2 cut(s)	2983, 3081
BstDSI	CCRYGG	4 cut(s)	1362, 2082, 2718, 2769
BstENI	CCTNNNNNAGG	1 cut(s)	2135
BstF5I	GGATG	7 cut(s)	841, 1984, 2314, 2706, 2911, 2921, 3027
BstFNI	CGCG	2 cut(s)	360, 2002
BstH2I	RGCGCY	4 cut(s)	121, 260, 2561, 2582
BstHHI	GCGC	6 cut(s)	120, 259, 1685, 2002, 2560, 2581
BstKTI	GATC	8 cut(s)	218, 232, 814, 985, 1336, 1560, 1600, 2014
BstMAI	GTCTC	6 cut(s)	196, 399, 774, 1069, 1222, 2277
BstMBI	GATC	8 cut(s)	215, 229, 811, 982, 1333, 1557, 1597, 2011
BstMWI	GCNNNNNNNGC	5 cut(s)	353, 1934, 2499, 2665, 2837
BstNI	CCWGG	4 cut(s)	911, 2031, 2534, 2645
BstNSI	RCATGY	1 cut(s)	1738
BstSCI	CCNGG	7 cut(s)	909, 2029, 2053, 2402, 2532, 2643, 2709
BstSLI	GKGCMC	1 cut(s)	2131
BstUI	CGCG	2 cut(s)	360, 2002
BstV1I	GCAGC	8 cut(s)	223, 274, 1686, 1692, 1708, 2300, 2514, 2926
BstV2I	GAAGAC	4 cut(s)	455, 1007, 1819, 2077
BstX2I	RGATCY	2 cut(s)	215, 1333
BstXI	CCANNNNNNTGG	2 cut(s)	1468, 2659
BstYI	RGATCY	2 cut(s)	215, 1333
BsuI	GTATCC	2 cut(s)	1251, 1434
BtgI	CCRYGG	4 cut(s)	1362, 2082, 2718, 2769
BtsCI	GGATG	7 cut(s)	841, 1984, 2314, 2706, 2911, 2921, 3027
BtsI	GCAGTG	2 cut(s)	347, 1935
BtsIMutI	CAGTG	6 cut(s)	347, 1578, 1935, 2268, 2896, 2921
BveI	ACCTGC	2 cut(s)	1771, 2845
CaiI	CAGNNNCTG	1 cut(s)	287
CciI	TCATGA	1 cut(s)	298
CfoI	GCGC	6 cut(s)	120, 259, 1685, 2002, 2560, 2581
Cfr10I	RCCGGY	1 cut(s)	2575
Cfr13I	GGNCC	9 cut(s)	154, 208, 907, 1318, 1366, 2749, 2766, 2773, 2964
CseI	GACGC	2 cut(s)	1707, 1908
Csp6I	GTAC	6 cut(s)	12, 499, 1103, 1126, 2223, 2715
CviQI	GTAC	6 cut(s)	12, 499, 1103, 1126, 2223, 2715
DinI	GGCGCC	1 cut(s)	2580
DpnI	GATC	8 cut(s)	217, 231, 813, 984, 1335, 1559, 1599, 2013
DpnII	GATC	8 cut(s)	215, 229, 811, 982, 1333, 1557, 1597, 2011
DraIII	CACNNNGTG	2 cut(s)	362, 2742
EaeI	YGGCCR	2 cut(s)	2277, 2951
Eam1104I	CTCTTC	4 cut(s)	1614, 1760, 1908, 2980
EarI	CTCTTC	4 cut(s)	1614, 1760, 1908, 2980
Eco130I	CCWWGG	9 cut(s)	517, 1362, 2082, 2561, 2582, 2701, 2718, 2769, 2832
Eco147I	AGGCCT	1 cut(s)	29
Eco24I	GRGCYC	2 cut(s)	851, 1986
Eco31I	GGTCTC	1 cut(s)	774
Eco32I	GATATC	2 cut(s)	738, 2112
Eco47I	GGWCC	4 cut(s)	208, 1318, 2749, 2773
Eco57I	CTGAAG	2 cut(s)	54, 615
EcoNI	CCTNNNNNAGG	1 cut(s)	2135
EcoO109I	RGGNCCY	3 cut(s)	154, 208, 2749
EcoRII	CCWGG	4 cut(s)	909, 2029, 2532, 2643
EcoRV	GATATC	2 cut(s)	738, 2112
EcoT14I	CCWWGG	9 cut(s)	517, 1362, 2082, 2561, 2582, 2701, 2718, 2769, 2832
EcoT22I	ATGCAT	1 cut(s)	2436
EcoT38I	GRGCYC	2 cut(s)	851, 1986
EgeI	GGCGCC	1 cut(s)	2580
EheI	GGCGCC	1 cut(s)	2580
ErhI	CCWWGG	9 cut(s)	517, 1362, 2082, 2561, 2582, 2701, 2718, 2769, 2832
Esp3I	CGTCTC	1 cut(s)	1222
FalI	AAGNNNNNCTT	2 cut(s)	1902, 1934
FaqI	GGGAC	1 cut(s)	2456
FauNDI	CATATG	1 cut(s)	1825
FbaI	TGATCA	1 cut(s)	1557
FokI	GGATG	7 cut(s)	848, 1991, 2321, 2693, 2908, 2918, 3034
FriOI	GRGCYC	2 cut(s)	851, 1986
FspBI	CTAG	7 cut(s)	518, 723, 1886, 2411, 2498, 2777, 2885
GlaI	GCGC	6 cut(s)	119, 258, 1684, 2001, 2559, 2580
GsaI	CCCAGC	1 cut(s)	531
HaeII	RGCGCY	4 cut(s)	121, 260, 2561, 2582
HapII	CCGG	5 cut(s)	123, 2054, 2403, 2576, 2710
HgaI	GACGC	2 cut(s)	1707, 1908
HhaI	GCGC	6 cut(s)	120, 259, 1685, 2002, 2560, 2581
Hin1I	GRCGYC	2 cut(s)	1900, 2579
Hin6I	GCGC	6 cut(s)	118, 257, 1683, 2000, 2558, 2579
HinP1I	GCGC	6 cut(s)	118, 257, 1683, 2000, 2558, 2579
HincII	GTYRAC	2 cut(s)	1722, 1872
HindII	GTYRAC	2 cut(s)	1722, 1872
HindIII	AAGCTT	4 cut(s)	1772, 1935, 2061, 2144
HpaII	CCGG	5 cut(s)	123, 2054, 2403, 2576, 2710
Hpy166II	GTNNAC	7 cut(s)	501, 1722, 1742, 1857, 1872, 2479, 2782
Hpy8I	GTNNAC	7 cut(s)	501, 1722, 1742, 1857, 1872, 2479, 2782
HpyAV	CCTTC	9 cut(s)	29, 328, 478, 639, 766, 1306, 1798, 2504, 2942
HpyCH4III	ACNGT	9 cut(s)	11, 171, 587, 607, 1098, 1216, 1246, 1378, 2916
HpyCH4IV	ACGT	2 cut(s)	1444, 2417
HpyF10VI	GCNNNNNNNGC	5 cut(s)	353, 1934, 2499, 2665, 2837
HpySE526I	ACGT	2 cut(s)	1444, 2417
Hsp92I	GRCGYC	2 cut(s)	1900, 2579
HspAI	GCGC	6 cut(s)	118, 257, 1683, 2000, 2558, 2579
KasI	GGCGCC	1 cut(s)	2578
Kpn2I	TCCGGA	1 cut(s)	122
KpnI	GGTACC	1 cut(s)	2718
Ksp22I	TGATCA	1 cut(s)	1557
Kzo9I	GATC	8 cut(s)	215, 229, 811, 982, 1333, 1557, 1597, 2011
LguI	GCTCTTC	1 cut(s)	1908
LmnI	GCTCC	5 cut(s)	125, 556, 793, 2158, 2536
Lsp1109I	GCAGC	8 cut(s)	223, 274, 1686, 1692, 1708, 2300, 2514, 2926
MaeI	CTAG	7 cut(s)	518, 723, 1886, 2411, 2498, 2777, 2885
MaeII	ACGT	2 cut(s)	1444, 2417
MalI	GATC	8 cut(s)	217, 231, 813, 984, 1335, 1559, 1599, 2013
MboI	GATC	8 cut(s)	215, 229, 811, 982, 1333, 1557, 1597, 2011
MfeI	CAATTG	2 cut(s)	855, 1818
MflI	RGATCY	2 cut(s)	215, 1333
MhlI	GDGCHC	6 cut(s)	358, 851, 1986, 2131, 2163, 3013
MlsI	TGGCCA	1 cut(s)	2279
MluNI	TGGCCA	1 cut(s)	2279
Mly113I	GGCGCC	1 cut(s)	2579
MmeI	TCCRAC	1 cut(s)	2883
Mox20I	TGGCCA	1 cut(s)	2279
Mph1103I	ATGCAT	1 cut(s)	2436
MroI	TCCGGA	1 cut(s)	122
MscI	TGGCCA	1 cut(s)	2279
MseI	TTAA	9 cut(s)	69, 1457, 1776, 1788, 1920, 2025, 2165, 2304, 2754
MslI	CAYNNNNRTG	7 cut(s)	585, 1226, 1583, 1661, 1707, 2273, 2855
Msp20I	TGGCCA	1 cut(s)	2279
MspA1I	CMGCKG	4 cut(s)	81, 287, 527, 1699
MspCI	CTTAAG	2 cut(s)	68, 1775
MspI	CCGG	5 cut(s)	123, 2054, 2403, 2576, 2710
MspR9I	CCNGG	7 cut(s)	911, 2031, 2055, 2404, 2534, 2645, 2711
MunI	CAATTG	2 cut(s)	855, 1818
Mva1269I	GAATGC	3 cut(s)	349, 1275, 2434
MvaI	CCWGG	4 cut(s)	911, 2031, 2534, 2645
MvnI	CGCG	2 cut(s)	360, 2002
MwoI	GCNNNNNNNGC	5 cut(s)	353, 1934, 2499, 2665, 2837
NarI	GGCGCC	1 cut(s)	2579
NciI	CCSGG	3 cut(s)	2055, 2404, 2711
NcoI	CCATGG	4 cut(s)	1362, 2082, 2718, 2769
NdeI	CATATG	1 cut(s)	1825
NdeII	GATC	8 cut(s)	215, 229, 811, 982, 1333, 1557, 1597, 2011
NlaIV	GGNNCC	7 cut(s)	127, 156, 1213, 2324, 2538, 2580, 2716
NmuCI	GTSAC	5 cut(s)	973, 1357, 1576, 1993, 2177
NsiI	ATGCAT	1 cut(s)	2436
NspI	RCATGY	1 cut(s)	1738
NspV	TTCGAA	2 cut(s)	2983, 3081
OliI	CACNNNNGTG	1 cut(s)	1226
PagI	TCATGA	1 cut(s)	298
PaqCI	CACCTGC	1 cut(s)	2845
PceI	AGGCCT	1 cut(s)	29
PciI	ACATGT	1 cut(s)	1734
PciSI	GCTCTTC	1 cut(s)	1908
PctI	GAATGC	3 cut(s)	349, 1275, 2434
PfeI	GAWTC	7 cut(s)	406, 719, 1342, 2019, 2105, 2247, 3083
PluTI	GGCGCC	1 cut(s)	2582
Ppu21I	YACGTR	1 cut(s)	1445
PpuMI	RGGWCCY	2 cut(s)	208, 2749
PscI	ACATGT	1 cut(s)	1734
PsiI	TTATAA	3 cut(s)	1610, 1833, 2600
Psp1406I	AACGTT	1 cut(s)	2417
Psp5II	RGGWCCY	2 cut(s)	208, 2749
Psp6I	CCWGG	4 cut(s)	909, 2029, 2532, 2643
PspFI	CCCAGC	1 cut(s)	527
PspGI	CCWGG	4 cut(s)	909, 2029, 2532, 2643
PspN4I	GGNNCC	7 cut(s)	127, 156, 1213, 2324, 2538, 2580, 2716
PspPI	GGNCC	9 cut(s)	154, 208, 907, 1318, 1366, 2749, 2766, 2773, 2964
PspPPI	RGGWCCY	2 cut(s)	208, 2749
PstNI	CAGNNNCTG	1 cut(s)	287
PsuI	RGATCY	2 cut(s)	215, 1333
PvuII	CAGCTG	2 cut(s)	527, 1699
RsaI	GTAC	6 cut(s)	13, 500, 1104, 1127, 2224, 2716
RsaNI	GTAC	6 cut(s)	12, 499, 1103, 1126, 2223, 2715
RseI	CAYNNNNRTG	7 cut(s)	585, 1226, 1583, 1661, 1707, 2273, 2855
SapI	GCTCTTC	1 cut(s)	1908
SaqAI	TTAA	9 cut(s)	69, 1457, 1776, 1788, 1920, 2025, 2165, 2304, 2754
Sau3AI	GATC	8 cut(s)	215, 229, 811, 982, 1333, 1557, 1597, 2011
Sau96I	GGNCC	9 cut(s)	154, 208, 907, 1318, 1366, 2749, 2766, 2773, 2964
ScaI	AGTACT	1 cut(s)	1104
ScrFI	CCNGG	7 cut(s)	911, 2031, 2055, 2404, 2534, 2645, 2711
SduI	GDGCHC	6 cut(s)	358, 851, 1986, 2131, 2163, 3013
SfoI	GGCGCC	1 cut(s)	2580
SfuI	TTCGAA	2 cut(s)	2983, 3081
SinI	GGWCC	4 cut(s)	208, 1318, 2749, 2773
SmiMI	CAYNNNNRTG	7 cut(s)	585, 1226, 1583, 1661, 1707, 2273, 2855
SmlI	CTYRAG	5 cut(s)	68, 389, 1206, 1775, 2568
SmoI	CTYRAG	5 cut(s)	68, 389, 1206, 1775, 2568
SpeI	ACTAGT	1 cut(s)	1885
SseBI	AGGCCT	1 cut(s)	29
SsiI	CCGC	7 cut(s)	79, 142, 278, 285, 360, 728, 2457
SspDI	GGCGCC	1 cut(s)	2578
SspI	AATATT	1 cut(s)	2731
SspMI	CTAG	7 cut(s)	518, 723, 1886, 2411, 2498, 2777, 2885
StuI	AGGCCT	1 cut(s)	29
StyD4I	CCNGG	7 cut(s)	909, 2029, 2053, 2402, 2532, 2643, 2709
StyI	CCWWGG	9 cut(s)	517, 1362, 2082, 2561, 2582, 2701, 2718, 2769, 2832
TaaI	ACNGT	9 cut(s)	11, 171, 587, 607, 1098, 1216, 1246, 1378, 2916
TaiI	ACGT	2 cut(s)	1447, 2420
TaqI	TCGA	7 cut(s)	916, 942, 1810, 2076, 2108, 2983, 3081
TatI	WGTACW	3 cut(s)	498, 1102, 1125
TauI	GCSGC	3 cut(s)	81, 280, 287
TfiI	GAWTC	7 cut(s)	406, 719, 1342, 2019, 2105, 2247, 3083
Tru1I	TTAA	9 cut(s)	69, 1457, 1776, 1788, 1920, 2025, 2165, 2304, 2754
Tru9I	TTAA	9 cut(s)	69, 1457, 1776, 1788, 1920, 2025, 2165, 2304, 2754
TscAI	CASTG	6 cut(s)	354, 1585, 1935, 2275, 2896, 2921
TseFI	GTSAC	5 cut(s)	973, 1357, 1576, 1993, 2177
TseI	GCWGC	8 cut(s)	236, 287, 1680, 1696, 1699, 2313, 2502, 2939
Tsp45I	GTSAC	5 cut(s)	973, 1357, 1576, 1993, 2177
TspGWI	ACGGA	1 cut(s)	2104
TspRI	CASTG	6 cut(s)	354, 1585, 1935, 2275, 2896, 2921
Vha464I	CTTAAG	2 cut(s)	68, 1775
VpaK11BI	GGWCC	4 cut(s)	208, 1318, 2749, 2773
XagI	CCTNNNNNAGG	1 cut(s)	2135
XapI	RAATTY	7 cut(s)	548, 689, 1407, 1758, 2049, 2379, 2992
XceI	RCATGY	1 cut(s)	1738
XmaJI	CCTAGG	1 cut(s)	517
XspI	CTAG	7 cut(s)	518, 723, 1886, 2411, 2498, 2777, 2885
ZrmI	AGTACT	1 cut(s)	1104
Zsp2I	ATGCAT	1 cut(s)	2436

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.