Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011512.1

Orthogroup ID

OG0008877

Physical Location & Seq

Genomic Coordinates Forward (+)

18344 .. 21666

Gene Structure 3323 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011512.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3135 bp

atgccaaacagtaccaatggtgatgaggcctctgaaggcatcagcaacccgactcttactactgaacttaggcagagccgctggtataaatactatgttattgtggttttcatctggcgctccggaaccaagccacgcctccgcagagcaaaggtcccttatcatcaacggtttctgaaaaagtttgctcgccttgatgtgagacaggacctcagatcctacttcaaggatcgtgctgcctatgtacctttgttagcgccaacaacaccaacaacgccgccagccgctgcctcaaatcatgtgattgacgaggttgctcgcattgtgagagagaaggacttgaatgcactgcgagcacgcgatggtgttgatgctgtttcaacacttctcaagtctcactctgagaatcatgctgatgatggtggtcaagttccacaactatcattgaagactaccaagcctgttttctttcacttcttgttgaaggcttgcaatcagtacacaatctttttcctcctaggctcagctgggttgcaatttgctattgaatttatggagcaaggagtcaaacaagggtggcatgacggtgttgccatacttgttactgtgttcctactcgttgctttcccttcagttaggaactatcgcaacgagtggaagatggtgaagcagttgttggagaggaacaaatttcgggtgaatgttgaaagaaatggagaatctagggcggttatgatatctcatgtttcggtgggtgatatagttcatttgaagaagggagaccatgctcctgctgatggcttgttcatagatcatggtgcgaaactggtcttggatgaggtattgagccccacaattgattttgaaaacaacccatttgtgttgtctggttcaaaagttattgagggccagggtcgaatgattgtggcatctgttggtgtcgatacagcttgtggagagatgctgagcttggtgaatgaggatcataatccaaataggaagactctgttacaagctttgatggacgaaccatatacttatatggagtatcttgcgtgttgtgtctcggtgctaattgctgtcgtggtgctaatacggttagcacttttcaggaagcatgacaagtacaatgacaggccagacctgaaaggggaggtttcaatgaacttgctgatgaagatttttgagaaaatatacttgaaaactcaaggaaccgtctccactttggtgagtgttcttgctactgcggtaatagggatacaacatggaatgccctttgtgatttcgcttgcaatttgtcaatggaataagaaggtggtccaaaatcgggcagatcctcagaatctttcagcttgtgtcaccatgggcctcgtaacggtcatctgcattgaaacaactggtgagaaaattcgtaacaagatggaggttatggacttttggatacgtgaaaaggatttaaccaatgaagtggagtctgatcaaattgaacaatttgctctgagaggactacatcaagaggtttctgctacctcagaaaataatttgttcatttatttgatcaagaacagatggggtgtcactgacatggaggtattggatcgcacatttataactctggaagagagaaaattgagttctgatgagaaatgtagtggcatcttagtgaggaaaacagagagcagcgcagaagatatgcagctgcatataaatggagatgcgtcaacaatcttagacatgtgttcacattataatgataagactggggaaagttctattatggaaattcagaagagaaagcttaagcaggtcattaagaacatggaggagaagggtcgaagaccaattgcatatgcttataagaaaacaaatgtgaaagagtttacagaaaatgggttgacattgttggcgctagtgggagtcagacgcccatataaagaagagcttaaaattgcagtggaagctttcagaaatgcaggaaaagaaatcaagctggtttccgaggatgagccctcaatagtgactgcgcgagcttctgatcttggaatctttaaccctggtcgtggtgatgatatggaaattgcgggcgaagctttcagaagactcaactccatggaaagactaaataaggtggatttgatatccgtgatgggaagtgccctcccaaaggacaagcttctcatggtggagcacttaaagaaaaagggtcacatagtagcgttctatggagggctaaccataaaagacactcgtactttgatagaagcagatattggaatcacagaggatatatggagcactgaaatggccagagacaatgctgatattatagttaaggatggctgcttatggttcccgaacttgaagtctgggaaatgtgcttaccacaacattcagaacttctgtcaaattcagctcacgatgatcatatccgggttgctagtaacgttagtagcaacgatgcattcaggggactctccattgactgcaattcacttgatttgggtgaacttgataatgtgccttctaggcagccagatgatggtaatggagttagaacgccaggagccacttgctcaagaaccagccccaaggactcaagaaccggcgccaaggactcagccacttataacccaagccatctggggaaacatagccattcaagtttcataccaggcttccaccttgctggtcttgcatttcatgggaaatgcaatagcgagcatgaaccaaggcatccggggtaccatggttttcaatatttacaccttgtgtcaggtccttaatctgttcagggccatggacctagtgaacaaggaagtcctaaatgttgttcttcacagttattgctttttgatggccttgggggctgttatggtcatgcaggtggtgattgttgagtttgggaaaggactagccagtggtgtgaggttggatgcaatacagtgggcatcctgcttccttcttgctgctctttcatggccgtttgattgggccataacttcgcagtttcgaagagaaaatttggcattgaggagagcacctatggggatgtcaagattttacatttgtgcttcgttgttcctcattttctctgtatcatattgtttcgaatcagattatgcacacacaacatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase_C E1-E2_ATPase

Protein Analysis

1044

Amino Acids

117.51

Weight (kDa)

7.97

Isoelectric Point (pI)

35.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008877)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g40950 FvH4_6g40950
malus_domestica	MD09G1122600.v1.1 MD09G1122800.v1.1 MD17G1113500.v1.1
prunus_persica	Prupe.3G200900_v2.0.a1
pyrus_communis	pycom09g04700 pycom09g04710 pycom17g10510
rosa_chinensis	RchiOBHm_Chr2g0156561 RchiOBHm_Chr2g0156581
rosa_laevigata	RLG00000020921
rosa_multiflora	Rmu_sc0011512.1_g000006
rosa_roxburghii	Rroxscaffold_2G00092940
rosa_rugosa	Rorug02G0454300
rosa_samantha	Rh2AG520100 Rh2BG532600 Rh2BG533100 Rh2CG505100 Rh2DG541500 Rh2DG541900
rosa_wichuraiana	Rw2G042880 Rw2G042890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	4 cut(s)	1610, 1749, 1857, 2627
AarI	CACCTGC	1 cut(s)	2872
Acc36I	ACCTGC	2 cut(s)	1795, 2872
Acc65I	GGTACC	1 cut(s)	2741
AccB1I	GGYRCC	2 cut(s)	2605, 2741
AccB7I	CCANNNNNTGG	1 cut(s)	2539
AccII	CGCG	2 cut(s)	360, 2026
AccIII	TCCGGA	1 cut(s)	122
AciI	CCGC	7 cut(s)	79, 142, 278, 285, 728, 1247, 2081
AclI	AACGTT	1 cut(s)	2444
AclWI	GGATC	5 cut(s)	210, 237, 990, 1328, 1605
AcoI	YGGCCR	2 cut(s)	2304, 2978
AcsI	RAATTY	6 cut(s)	548, 689, 1407, 1782, 2406, 3019
AcuI	CTGAAG	2 cut(s)	54, 615
AcyI	GRCGYC	2 cut(s)	1924, 2606
AdeI	CACNNNGTG	1 cut(s)	2769
AfaI	GTAC	6 cut(s)	13, 246, 500, 1127, 2251, 2743
AfiI	CCNNNNNNNGG	7 cut(s)	797, 1150, 1327, 1375, 2060, 2164, 2539
AflII	CTTAAG	1 cut(s)	1799
AflIII	ACRYGT	1 cut(s)	1734
AjnI	CCWGG	4 cut(s)	909, 2053, 2559, 2670
AjuI	GAANNNNNNNTTGG	8 cut(s)	449, 481, 659, 691, 815, 847, 2253, 2285
AleI	CACNNNNGTG	1 cut(s)	1226
Alw21I	GWGCWC	4 cut(s)	358, 2190, 2297, 3040
Alw26I	GTCTC	6 cut(s)	196, 399, 774, 1069, 1222, 2304
AlwI	GGATC	5 cut(s)	210, 237, 990, 1328, 1605
AlwNI	CAGNNNCTG	1 cut(s)	287
Aor13HI	TCCGGA	1 cut(s)	122
AoxI	GGCC	9 cut(s)	27, 907, 1136, 1366, 2304, 2793, 2856, 2978, 2991
ApeKI	GCWGC	8 cut(s)	236, 287, 1680, 1696, 1699, 2340, 2529, 2966
ApoI	RAATTY	6 cut(s)	548, 689, 1407, 1782, 2406, 3019
ArsI	GACNNNNNNTTYG	2 cut(s)	2348, 2380
Asp718I	GGTACC	1 cut(s)	2741
AspA2I	CCTAGG	1 cut(s)	517
AspLEI	GCGC	6 cut(s)	120, 259, 1685, 1909, 2026, 2608
AspS9I	GGNCC	9 cut(s)	154, 208, 907, 1318, 1366, 2776, 2793, 2800, 2991
AsuC2I	CCSGG	2 cut(s)	2431, 2738
AsuII	TTCGAA	2 cut(s)	3010, 3108
AvaII	GGWCC	5 cut(s)	154, 208, 1318, 2776, 2800
AvrII	CCTAGG	1 cut(s)	517
BaeGI	GKGCMC	1 cut(s)	2158
BaeI	ACNNNNGTAYC	2 cut(s)	2733, 2766
BalI	TGGCCA	1 cut(s)	2306
BanI	GGYRCC	2 cut(s)	2605, 2741
BanII	GRGCYC	2 cut(s)	851, 2010
BbsI	GAAGAC	4 cut(s)	455, 1007, 1843, 2104
Bbv12I	GWGCWC	4 cut(s)	358, 2190, 2297, 3040
BbvI	GCAGC	8 cut(s)	223, 274, 1686, 1692, 1708, 2327, 2541, 2953
BceAI	ACGGC	1 cut(s)	2965
BciT130I	CCWGG	4 cut(s)	911, 2055, 2561, 2672
BciVI	GTATCC	2 cut(s)	1251, 1434
BclI	TGATCA	3 cut(s)	1477, 1557, 2421
BcnI	CCSGG	2 cut(s)	2431, 2738
BcoDI	GTCTC	6 cut(s)	196, 399, 774, 1069, 1222, 2304
BfaI	CTAG	7 cut(s)	518, 723, 1910, 2438, 2525, 2804, 2912
BfoI	RGCGCY	4 cut(s)	121, 260, 1910, 2609
BfrI	CTTAAG	1 cut(s)	1799
BfuAI	ACCTGC	2 cut(s)	1795, 2872
BfuI	GTATCC	2 cut(s)	1251, 1434
BglI	GCCNNNNNGGC	2 cut(s)	2526, 2864
BlnI	CCTAGG	1 cut(s)	517
BlpI	GCTNAGC	2 cut(s)	523, 965
Bme1390I	CCNGG	6 cut(s)	911, 2055, 2431, 2561, 2672, 2738
Bme18I	GGWCC	5 cut(s)	154, 208, 1318, 2776, 2800
BmgT120I	GGNCC	9 cut(s)	154, 208, 907, 1318, 1366, 2776, 2793, 2800, 2991
BmiI	GGNNCC	7 cut(s)	127, 156, 1213, 2351, 2565, 2607, 2743
BmrFI	CCNGG	6 cut(s)	911, 2055, 2431, 2561, 2672, 2738
BmrI	ACTGGG	1 cut(s)	1770
BmuI	ACTGGG	1 cut(s)	1770
BpiI	GAAGAC	4 cut(s)	455, 1007, 1843, 2104
Bpu1102I	GCTNAGC	2 cut(s)	523, 965
Bpu14I	TTCGAA	2 cut(s)	3010, 3108
BpuEI	CTTGAG	4 cut(s)	374, 1191, 2559, 2580
BpuMI	CCSGG	2 cut(s)	2431, 2738
BsaAI	YACGTR	1 cut(s)	1445
BsaBI	GATNNNNATC	1 cut(s)	987
BsaHI	GRCGYC	2 cut(s)	1924, 2606
BsaI	GGTCTC	1 cut(s)	774
BsaWI	WCCGGW	1 cut(s)	122
Bsc4I	CCNNNNNNNGG	7 cut(s)	797, 1150, 1327, 1375, 2060, 2164, 2539
Bse118I	RCCGGY	1 cut(s)	2602
Bse1I	ACTGG	4 cut(s)	831, 1402, 1765, 2916
Bse8I	GATNNNNATC	1 cut(s)	987
BseAI	TCCGGA	1 cut(s)	122
BseBI	CCWGG	4 cut(s)	911, 2055, 2561, 2672
BseGI	GGATG	7 cut(s)	841, 2008, 2341, 2733, 2938, 2948, 3054
BseJI	GATNNNNATC	1 cut(s)	987
BseLI	CCNNNNNNNGG	7 cut(s)	797, 1150, 1327, 1375, 2060, 2164, 2539
BseMII	CTCAG	8 cut(s)	226, 393, 537, 956, 1352, 1490, 1545, 2630
BseNI	ACTGG	4 cut(s)	831, 1402, 1765, 2916
BseRI	GAGGAG	2 cut(s)	1838, 3046
BseSI	GKGCMC	1 cut(s)	2158
BseXI	GCAGC	8 cut(s)	223, 274, 1686, 1692, 1708, 2327, 2541, 2953
BseYI	CCCAGC	1 cut(s)	527
Bsh1236I	CGCG	2 cut(s)	360, 2026
BshFI	GGCC	9 cut(s)	29, 909, 1138, 1368, 2306, 2795, 2858, 2980, 2993
BshNI	GGYRCC	2 cut(s)	2605, 2741
BsiHKAI	GWGCWC	4 cut(s)	358, 2190, 2297, 3040
BsiSI	CCGG	4 cut(s)	123, 2430, 2603, 2737
BslFI	GGGAC	2 cut(s)	140, 2483
BslI	CCNNNNNNNGG	7 cut(s)	797, 1150, 1327, 1375, 2060, 2164, 2539
BsmAI	GTCTC	6 cut(s)	196, 399, 774, 1069, 1222, 2304
BsmBI	CGTCTC	1 cut(s)	1222
BsmFI	GGGAC	2 cut(s)	140, 2483
BsmI	GAATGC	3 cut(s)	349, 1275, 2461
BsnI	GGCC	9 cut(s)	29, 909, 1138, 1368, 2306, 2795, 2858, 2980, 2993
Bso31I	GGTCTC	1 cut(s)	774
Bsp119I	TTCGAA	2 cut(s)	3010, 3108
Bsp1286I	GDGCHC	7 cut(s)	358, 851, 2010, 2158, 2190, 2297, 3040
Bsp13I	TCCGGA	1 cut(s)	122
Bsp1720I	GCTNAGC	2 cut(s)	523, 965
Bsp19I	CCATGG	4 cut(s)	1362, 2109, 2745, 2796
BspACI	CCGC	7 cut(s)	79, 142, 278, 285, 728, 1247, 2081
BspANI	GGCC	9 cut(s)	29, 909, 1138, 1368, 2306, 2795, 2858, 2980, 2993
BspCNI	CTCAG	8 cut(s)	225, 394, 536, 957, 1351, 1491, 1544, 2629
BspEI	TCCGGA	1 cut(s)	122
BspFNI	CGCG	2 cut(s)	360, 2026
BspLI	GGNNCC	7 cut(s)	127, 156, 1213, 2351, 2565, 2607, 2743
BspMI	ACCTGC	2 cut(s)	1795, 2872
BspPI	GGATC	5 cut(s)	210, 237, 990, 1328, 1605
BspQI	GCTCTTC	1 cut(s)	1932
BspT104I	TTCGAA	2 cut(s)	3010, 3108
BspT107I	GGYRCC	2 cut(s)	2605, 2741
BspTI	CTTAAG	1 cut(s)	1799
BspTNI	GGTCTC	1 cut(s)	774
BsrFI	RCCGGY	1 cut(s)	2602
BsrI	ACTGG	4 cut(s)	831, 1402, 1765, 2916
BssAI	RCCGGY	1 cut(s)	2602
BssNI	GRCGYC	2 cut(s)	1924, 2606
BssT1I	CCWWGG	9 cut(s)	517, 1362, 2109, 2588, 2609, 2728, 2745, 2796, 2859
Bst2UI	CCWGG	4 cut(s)	911, 2055, 2561, 2672
Bst4CI	ACNGT	9 cut(s)	11, 171, 587, 607, 1098, 1216, 1378, 2840, 2943
Bst6I	CTCTTC	4 cut(s)	1614, 1784, 1932, 3007
BstACI	GRCGYC	2 cut(s)	1924, 2606
BstAFI	CTTAAG	1 cut(s)	1799
BstBAI	YACGTR	1 cut(s)	1445
BstBI	TTCGAA	2 cut(s)	3010, 3108
BstDSI	CCRYGG	4 cut(s)	1362, 2109, 2745, 2796
BstENI	CCTNNNNNAGG	1 cut(s)	2162
BstF5I	GGATG	7 cut(s)	841, 2008, 2341, 2733, 2938, 2948, 3054
BstFNI	CGCG	2 cut(s)	360, 2026
BstH2I	RGCGCY	4 cut(s)	121, 260, 1910, 2609
BstHHI	GCGC	6 cut(s)	120, 259, 1685, 1909, 2026, 2608
BstMAI	GTCTC	6 cut(s)	196, 399, 774, 1069, 1222, 2304
BstMWI	GCNNNNNNNGC	6 cut(s)	353, 1958, 2087, 2526, 2692, 2864
BstNI	CCWGG	4 cut(s)	911, 2055, 2561, 2672
BstNSI	RCATGY	1 cut(s)	1738
BstSCI	CCNGG	6 cut(s)	909, 2053, 2429, 2559, 2670, 2736
BstSLI	GKGCMC	1 cut(s)	2158
BstUI	CGCG	2 cut(s)	360, 2026
BstV1I	GCAGC	8 cut(s)	223, 274, 1686, 1692, 1708, 2327, 2541, 2953
BstV2I	GAAGAC	4 cut(s)	455, 1007, 1843, 2104
BstX2I	RGATCY	2 cut(s)	215, 1333
BstXI	CCANNNNNNTGG	2 cut(s)	1468, 2686
BstYI	RGATCY	2 cut(s)	215, 1333
BsuI	GTATCC	2 cut(s)	1251, 1434
BsuRI	GGCC	9 cut(s)	29, 909, 1138, 1368, 2306, 2795, 2858, 2980, 2993
BtgI	CCRYGG	4 cut(s)	1362, 2109, 2745, 2796
BtgZI	GCGATG	1 cut(s)	375
BtsCI	GGATG	7 cut(s)	841, 2008, 2341, 2733, 2938, 2948, 3054
BtsI	GCAGTG	2 cut(s)	347, 1959
BtsIMutI	CAGTG	6 cut(s)	347, 1578, 1959, 2295, 2923, 2948
BveI	ACCTGC	2 cut(s)	1795, 2872
CaiI	CAGNNNCTG	1 cut(s)	287
CfoI	GCGC	6 cut(s)	120, 259, 1685, 1909, 2026, 2608
Cfr10I	RCCGGY	1 cut(s)	2602
Cfr13I	GGNCC	9 cut(s)	154, 208, 907, 1318, 1366, 2776, 2793, 2800, 2991
CseI	GACGC	2 cut(s)	1707, 1932
Csp6I	GTAC	6 cut(s)	12, 245, 499, 1126, 2250, 2742
CviQI	GTAC	6 cut(s)	12, 245, 499, 1126, 2250, 2742
DinI	GGCGCC	1 cut(s)	2607
DraIII	CACNNNGTG	1 cut(s)	2769
EaeI	YGGCCR	2 cut(s)	2304, 2978
Eam1104I	CTCTTC	4 cut(s)	1614, 1784, 1932, 3007
EarI	CTCTTC	4 cut(s)	1614, 1784, 1932, 3007
Eco130I	CCWWGG	9 cut(s)	517, 1362, 2109, 2588, 2609, 2728, 2745, 2796, 2859
Eco147I	AGGCCT	1 cut(s)	29
Eco24I	GRGCYC	2 cut(s)	851, 2010
Eco31I	GGTCTC	1 cut(s)	774
Eco32I	GATATC	2 cut(s)	738, 2139
Eco47I	GGWCC	5 cut(s)	154, 208, 1318, 2776, 2800
Eco57I	CTGAAG	2 cut(s)	54, 615
EcoNI	CCTNNNNNAGG	1 cut(s)	2162
EcoO109I	RGGNCCY	3 cut(s)	154, 208, 2776
EcoRII	CCWGG	4 cut(s)	909, 2053, 2559, 2670
EcoRV	GATATC	2 cut(s)	738, 2139
EcoT14I	CCWWGG	9 cut(s)	517, 1362, 2109, 2588, 2609, 2728, 2745, 2796, 2859
EcoT22I	ATGCAT	1 cut(s)	2463
EcoT38I	GRGCYC	2 cut(s)	851, 2010
EgeI	GGCGCC	1 cut(s)	2607
EheI	GGCGCC	1 cut(s)	2607
ErhI	CCWWGG	9 cut(s)	517, 1362, 2109, 2588, 2609, 2728, 2745, 2796, 2859
Esp3I	CGTCTC	1 cut(s)	1222
FalI	AAGNNNNNCTT	2 cut(s)	1926, 1958
FaqI	GGGAC	2 cut(s)	140, 2483
FauI	CCCGC	1 cut(s)	2074
FauNDI	CATATG	1 cut(s)	1849
FbaI	TGATCA	3 cut(s)	1477, 1557, 2421
FokI	GGATG	7 cut(s)	848, 2015, 2348, 2720, 2935, 2945, 3061
FriOI	GRGCYC	2 cut(s)	851, 2010
FspBI	CTAG	7 cut(s)	518, 723, 1910, 2438, 2525, 2804, 2912
GlaI	GCGC	6 cut(s)	119, 258, 1684, 1908, 2025, 2607
GsaI	CCCAGC	1 cut(s)	531
HaeII	RGCGCY	4 cut(s)	121, 260, 1910, 2609
HaeIII	GGCC	9 cut(s)	29, 909, 1138, 1368, 2306, 2795, 2858, 2980, 2993
HapII	CCGG	4 cut(s)	123, 2430, 2603, 2737
HgaI	GACGC	2 cut(s)	1707, 1932
HhaI	GCGC	6 cut(s)	120, 259, 1685, 1909, 2026, 2608
Hin1I	GRCGYC	2 cut(s)	1924, 2606
Hin6I	GCGC	6 cut(s)	118, 257, 1683, 1907, 2024, 2606
HinP1I	GCGC	6 cut(s)	118, 257, 1683, 1907, 2024, 2606
HincII	GTYRAC	2 cut(s)	1722, 1896
HindII	GTYRAC	2 cut(s)	1722, 1896
HindIII	AAGCTT	5 cut(s)	1014, 1796, 1959, 2088, 2171
HpaII	CCGG	4 cut(s)	123, 2430, 2603, 2737
Hpy166II	GTNNAC	7 cut(s)	501, 1722, 1742, 1881, 1896, 2506, 2809
Hpy8I	GTNNAC	7 cut(s)	501, 1722, 1742, 1881, 1896, 2506, 2809
HpyAV	CCTTC	9 cut(s)	29, 328, 478, 639, 769, 1306, 1822, 2531, 2969
HpyCH4III	ACNGT	9 cut(s)	11, 171, 587, 607, 1098, 1216, 1378, 2840, 2943
HpyCH4IV	ACGT	2 cut(s)	1444, 2444
HpyF10VI	GCNNNNNNNGC	6 cut(s)	353, 1958, 2087, 2526, 2692, 2864
HpySE526I	ACGT	2 cut(s)	1444, 2444
Hsp92I	GRCGYC	2 cut(s)	1924, 2606
HspAI	GCGC	6 cut(s)	118, 257, 1683, 1907, 2024, 2606
KasI	GGCGCC	1 cut(s)	2605
Kpn2I	TCCGGA	1 cut(s)	122
KpnI	GGTACC	1 cut(s)	2745
Ksp22I	TGATCA	3 cut(s)	1477, 1557, 2421
LguI	GCTCTTC	1 cut(s)	1932
LmnI	GCTCC	6 cut(s)	125, 556, 793, 2185, 2292, 2563
Lsp1109I	GCAGC	8 cut(s)	223, 274, 1686, 1692, 1708, 2327, 2541, 2953
MaeI	CTAG	7 cut(s)	518, 723, 1910, 2438, 2525, 2804, 2912
MaeII	ACGT	2 cut(s)	1444, 2444
MaeIII	GTNAC	9 cut(s)	601, 1008, 1357, 1372, 1412, 1576, 2017, 2204, 2440
MfeI	CAATTG	2 cut(s)	855, 1842
MflI	RGATCY	2 cut(s)	215, 1333
MhlI	GDGCHC	7 cut(s)	358, 851, 2010, 2158, 2190, 2297, 3040
MlsI	TGGCCA	1 cut(s)	2306
MluNI	TGGCCA	1 cut(s)	2306
Mly113I	GGCGCC	1 cut(s)	2606
MlyI	GAGTC	9 cut(s)	46, 573, 997, 1481, 1926, 2094, 2465, 2587, 2608
MmeI	TCCRAC	2 cut(s)	657, 2910
Mox20I	TGGCCA	1 cut(s)	2306
Mph1103I	ATGCAT	1 cut(s)	2463
MroI	TCCGGA	1 cut(s)	122
MscI	TGGCCA	1 cut(s)	2306
MseI	TTAA	8 cut(s)	1457, 1800, 1812, 1944, 2049, 2192, 2331, 2781
MslI	CAYNNNNRTG	9 cut(s)	414, 585, 1226, 1583, 1661, 1707, 1749, 2300, 2882
Msp20I	TGGCCA	1 cut(s)	2306
MspA1I	CMGCKG	4 cut(s)	81, 287, 527, 1699
MspCI	CTTAAG	1 cut(s)	1799
MspI	CCGG	4 cut(s)	123, 2430, 2603, 2737
MspR9I	CCNGG	6 cut(s)	911, 2055, 2431, 2561, 2672, 2738
MunI	CAATTG	2 cut(s)	855, 1842
Mva1269I	GAATGC	3 cut(s)	349, 1275, 2461
MvaI	CCWGG	4 cut(s)	911, 2055, 2561, 2672
MvnI	CGCG	2 cut(s)	360, 2026
MwoI	GCNNNNNNNGC	6 cut(s)	353, 1958, 2087, 2526, 2692, 2864
NarI	GGCGCC	1 cut(s)	2606
NciI	CCSGG	2 cut(s)	2431, 2738
NcoI	CCATGG	4 cut(s)	1362, 2109, 2745, 2796
NdeI	CATATG	1 cut(s)	1849
NlaIV	GGNNCC	7 cut(s)	127, 156, 1213, 2351, 2565, 2607, 2743
NmuCI	GTSAC	4 cut(s)	1357, 1576, 2017, 2204
NsiI	ATGCAT	1 cut(s)	2463
NspI	RCATGY	1 cut(s)	1738
NspV	TTCGAA	2 cut(s)	3010, 3108
OliI	CACNNNNGTG	1 cut(s)	1226
PaqCI	CACCTGC	1 cut(s)	2872
PceI	AGGCCT	1 cut(s)	29
PciI	ACATGT	1 cut(s)	1734
PciSI	GCTCTTC	1 cut(s)	1932
PctI	GAATGC	3 cut(s)	349, 1275, 2461
PfeI	GAWTC	6 cut(s)	406, 719, 1342, 2043, 2274, 3110
PflMI	CCANNNNNTGG	1 cut(s)	2539
PleI	GAGTC	9 cut(s)	46, 572, 997, 1480, 1925, 2094, 2465, 2587, 2608
PluTI	GGCGCC	1 cut(s)	2609
PpsI	GAGTC	9 cut(s)	46, 572, 997, 1480, 1925, 2094, 2465, 2587, 2608
Ppu21I	YACGTR	1 cut(s)	1445
PpuMI	RGGWCCY	3 cut(s)	154, 208, 2776
PscI	ACATGT	1 cut(s)	1734
PsiI	TTATAA	4 cut(s)	1610, 1749, 1857, 2627
Psp1406I	AACGTT	1 cut(s)	2444
Psp5II	RGGWCCY	3 cut(s)	154, 208, 2776
Psp6I	CCWGG	4 cut(s)	909, 2053, 2559, 2670
PspFI	CCCAGC	1 cut(s)	527
PspGI	CCWGG	4 cut(s)	909, 2053, 2559, 2670
PspN4I	GGNNCC	7 cut(s)	127, 156, 1213, 2351, 2565, 2607, 2743
PspPI	GGNCC	9 cut(s)	154, 208, 907, 1318, 1366, 2776, 2793, 2800, 2991
PspPPI	RGGWCCY	3 cut(s)	154, 208, 2776
PstNI	CAGNNNCTG	1 cut(s)	287
PsuI	RGATCY	2 cut(s)	215, 1333
PvuII	CAGCTG	2 cut(s)	527, 1699
RsaI	GTAC	6 cut(s)	13, 246, 500, 1127, 2251, 2743
RsaNI	GTAC	6 cut(s)	12, 245, 499, 1126, 2250, 2742
RseI	CAYNNNNRTG	9 cut(s)	414, 585, 1226, 1583, 1661, 1707, 1749, 2300, 2882
SapI	GCTCTTC	1 cut(s)	1932
SaqAI	TTAA	8 cut(s)	1457, 1800, 1812, 1944, 2049, 2192, 2331, 2781
Sau96I	GGNCC	9 cut(s)	154, 208, 907, 1318, 1366, 2776, 2793, 2800, 2991
SchI	GAGTC	9 cut(s)	46, 573, 997, 1481, 1926, 2094, 2465, 2587, 2608
ScrFI	CCNGG	6 cut(s)	911, 2055, 2431, 2561, 2672, 2738
SduI	GDGCHC	7 cut(s)	358, 851, 2010, 2158, 2190, 2297, 3040
SfoI	GGCGCC	1 cut(s)	2607
SfuI	TTCGAA	2 cut(s)	3010, 3108
SinI	GGWCC	5 cut(s)	154, 208, 1318, 2776, 2800
SmiMI	CAYNNNNRTG	9 cut(s)	414, 585, 1226, 1583, 1661, 1707, 1749, 2300, 2882
SmlI	CTYRAG	5 cut(s)	389, 1206, 1799, 2574, 2595
SmoI	CTYRAG	5 cut(s)	389, 1206, 1799, 2574, 2595
SseBI	AGGCCT	1 cut(s)	29
SsiI	CCGC	7 cut(s)	79, 142, 278, 285, 728, 1247, 2081
SspDI	GGCGCC	1 cut(s)	2605
SspI	AATATT	1 cut(s)	2758
SspMI	CTAG	7 cut(s)	518, 723, 1910, 2438, 2525, 2804, 2912
StuI	AGGCCT	1 cut(s)	29
StyD4I	CCNGG	6 cut(s)	909, 2053, 2429, 2559, 2670, 2736
StyI	CCWWGG	9 cut(s)	517, 1362, 2109, 2588, 2609, 2728, 2745, 2796, 2859
TaaI	ACNGT	9 cut(s)	11, 171, 587, 607, 1098, 1216, 1378, 2840, 2943
TaiI	ACGT	2 cut(s)	1447, 2447
TaqI	TCGA	5 cut(s)	916, 942, 1834, 3010, 3108
TatI	WGTACW	2 cut(s)	498, 1125
TauI	GCSGC	3 cut(s)	81, 280, 287
TfiI	GAWTC	6 cut(s)	406, 719, 1342, 2043, 2274, 3110
Tru1I	TTAA	8 cut(s)	1457, 1800, 1812, 1944, 2049, 2192, 2331, 2781
Tru9I	TTAA	8 cut(s)	1457, 1800, 1812, 1944, 2049, 2192, 2331, 2781
TscAI	CASTG	6 cut(s)	354, 1585, 1959, 2302, 2923, 2948
TseFI	GTSAC	4 cut(s)	1357, 1576, 2017, 2204
TseI	GCWGC	8 cut(s)	236, 287, 1680, 1696, 1699, 2340, 2529, 2966
Tsp45I	GTSAC	4 cut(s)	1357, 1576, 2017, 2204
TspGWI	ACGGA	1 cut(s)	2131
TspRI	CASTG	6 cut(s)	354, 1585, 1959, 2302, 2923, 2948
Van91I	CCANNNNNTGG	1 cut(s)	2539
Vha464I	CTTAAG	1 cut(s)	1799
VpaK11BI	GGWCC	5 cut(s)	154, 208, 1318, 2776, 2800
XagI	CCTNNNNNAGG	1 cut(s)	2162
XapI	RAATTY	6 cut(s)	548, 689, 1407, 1782, 2406, 3019
XceI	RCATGY	1 cut(s)	1738
XmaJI	CCTAGG	1 cut(s)	517
XspI	CTAG	7 cut(s)	518, 723, 1910, 2438, 2525, 2804, 2912
Zsp2I	ATGCAT	1 cut(s)	2463

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.