Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0009212

Physical Location & Seq

Genomic Coordinates Reverse (-)

58360732 .. 58368702

Gene Structure 7971 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0454200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2862 bp

ATGGCTGAAGATCTGGACAAACCGTTGTTGGATCCTGAGAATTTCAATAGAGATGGCATCGATTTGGAACGCTTACCCCTGGAAGAAGTTTTTGAACAACTGAGAACATCAGCAAGAGGACTTTCATCCGATGATGCTGAAGCCAGATTGCACATTTTTGGCCACAACAAACTTGAAGAGAAGACAGAGAACAAAATTTTGAAGTTTCTTAGCTTTATGTGGAACCCCTTGTCATGGGTTATGGAAGCTGCAGCAGTTATGGCACTTGTCCTTGCTAATGGGGGAGGTGAGGGTCCTGACTGGCAAGACTTTGTTGGGATTATTGTCCTATTAATAATCAATTCAACAATTAGTTTCATAGAGGAGAATAATGCGGGAAATGCTGCATCAGCTCTTATGGAACGTTTATCTCCAAAGACAAGGGTTCTCAGAGATGGGCAGTGGCAAGAGCAAGATGCAGGTATTTTAGTGCCAGGAGACATAATTAGCATAAAGCTCGGGGATATAATTCCAGCTGATGCTCGTCTACTTGAAGGAGACCCTCTGAAAGTTGACCAGTCGGCTCTTACAGGAGAGTCTCTGGCTGTCACCAAGAGGACAGGTGATGAAGTATTTTCTGGTTCAACATGTAAGCATGGAGAAATTGAAGCTGTAGTGATAGCAACCGGAGTTCACTCATTTTTTGGAAAAGCAGCACATTTAGTCGACTCCACTGACGTTGTGGGACATTTCCAGCAGGTCCTTACTGCCATTGGGAATTTCTGCATTTGCTCTATAGCTGTGGGAATGGTTCTTGAAATCATTGTCATGTTCCCCATACAGCAACGTTCTTACAGGGATGGAATCAACAACCTTCTTGTTCTCTTAATTGGAGGAATTCCAATTGCTATGCCAACAGTGTTATCTGTGACACTTGCAATTGGTTCTCATCGACTATCTCAACAGGGTGCTATTACAAAAAGGATGACAGCAATTGAAGAAATGGCGGGAATGGATGTCCTTTGTAGTGACAAAACTGGAACTCTTACCCTGAACCGCCTCACTGTTGATAAAAACCTGGTTGAGGTTTTTAACAATAATATAGACAGAGACACAGTTATCTTATTTGCAGCCAGAGCAGCAAGACTGGAGAATCAAGATGCAATTGATGCAGCCATTACCAATATGCTTGGTGATCCAAAGGAGGCACGTGCAAATATTACCGAAGTGCATTTTCTGCCCTTCAATCCAGTGGACAAGCGTACTGCCATTACATACATCGACTCTGATGGTAATTGGTATAGGGCCAGCAAAGGAGCTCCAGAACAGATTCTAGATCTTTGCCCTGAGAAAAATGAGATTGCTGGAAGAGTACATAGCACCATTGACAAATTTGCTGAAAGAGGCTTGCGGTCTCTTGGAGTTGCTTATCAGGAAGTTCCAGAAAAAACTAAAGAAAGCCCTGGTGGTCCTTGGACATTTTGTGGGTTGTTGCCCTTGTTTGATCCTCCGAGGCATGACAGTGCTGAGACCATTCGTAGAGCACTTAACCTTGGAGTCGCTGTGAAGATGATTACAGGTGACCAGTTGGCAATTGCGAAGGAGACAGGGAGACGGCTTGGTATGGGAACAAACATGTATCCTTCCTCTTCATTATTGGGCCGCAGAAAAGAAGAAGACCACGAAGCCGTGCCAGTGGACGAGCTGATTGAGAAGGCAGATGGCTTTGCTGGTGTCTTCCCTGAACACAAGTATGAAATTGTAAAAATCTTACAAGAAAAGAAGCATGTCGTTGGAATGACTGGAGATGGTGTTAATGATGCACCTGCTTTAAAGAAAGCAGACATTGGTATAGCAGTGGCAGATTCCACAGATGCTGCGAGAAGTGCTTCTGATATAGTCTTAACGGAACCTGGCTTAAGTGTCATTGTCAGTGCTGTCCTGACCAGTCGAGCTATATTCCAGAGAATGAAGAATTATACTATATATGCTGTTTCCATTACCATTAGGATTGTGCTTGGTTTCGTGCTTCTTGCATTGATATGGGAGTATGATTTCCCACCTTTCATGGTTCTGATTATAGCAATACTGAATGATGGGACCATCATGACAATTTCCCAAGATCGGGTAAAGCCCTCTCCAAAGCCTGACAGTTGGAAGTTGAATGAGATATTTGCAACTGGCATTGTCATTGGTACATATCTAGCTTTGGTTACTGTGTTATTTTACTGGACTGTCATTGAGACCACCTTCTTTGAGGACACCTTCGGCTTAATGTCTATATCCGACAACAGTGAGGAAGTTTCATCTGCTGTATATCTGCAAGTTAGCATCATAAGTCAAGCTCTCATATTTGTTACCCGAAGTCAAGGATGGTCATTTCTTGAGAGACCTGGAGCTCTCTTGATGATTGCATTTGTTGTGGCTCAACTGGTGGCTACTCTGATTGCCGTCTATGCGGAAATCAGCTTTGCTTACATTAGCGGCATTGGATGGGGATGGGCTGGAGTCATATGGTTGTATAGTTTGATTTTCTACTTCCCCTTGGACATTATCAAGTTCGCAATTCGCTATGCCTTGAGTGGAGATGCCTGGAATTTATTGTTTGATAGAAAGACAGCTTTTACTGCTAAGAAAGATTATGGGAAGGAAGACAGGGCAGCTAAGTGGGTACTTTCTCAGAGAACTTTACAGGGGTTGCATGACATGGAGTTCAAGGCAGGTAGAACTAGCCCCAACAATTCTGGTTGGATTGCCGAACAGGCCAGACGGCGCGCTGAAATAGCCAGGTTGGGAGAGCTACACACTATGAGAGGACATGTAGAATCAGTAATGAGGCTAAAAAATTTGGACCCGAACGTTATTTCCGCCCACACAGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000972 GO:0003674 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005737 GO:0006325 GO:0006355 GO:0006403 GO:0006405 GO:0006606 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0006997 GO:0008104 GO:0008150 GO:0009507 GO:0009536 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016043 GO:0017038 GO:0017056 GO:0019219 GO:0019222 GO:0031080 GO:0031081 GO:0031323 GO:0031326 GO:0031503 GO:0031967 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0034504 GO:0034613 GO:0034629 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0050789 GO:0050794 GO:0051168 GO:0051169 GO:0051170 GO:0051171 GO:0051179 GO:0051234 GO:0051236 GO:0051252 GO:0051276 GO:0051641 GO:0051649 GO:0051664 GO:0051668 GO:0060255 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Nucleoporin_C Nucleoporin_N

Protein Analysis

953

Amino Acids

104.85

Weight (kDa)

5.25

Isoelectric Point (pI)

36.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_ATPase_N	PF00690	24 - 87	5.9e-15	Cation transporter/ATPase, N-terminus
E1-E2_ATPase	PF00122	136 - 235	2.6e-30	P-type ATPase actuator domain
Hydrolase	PF00702	331 - 608	3.2e-13	haloacid dehalogenase-like hydrolase
Cation_ATPase	PF13246	381 - 499	3.4e-07	P-type ATPase, cytoplasmic domain N

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0009212)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05120 AT2G05120
fragaria_vesca	FvH4_6g40930 FvH4_6g40930 FvH4_6g40930 FvH4_6g40930 FvH4_6g40930
malus_domestica	MD17G1113600.v1.1
prunus_persica	Prupe.3G200800_v2.0.a1
pyrus_communis	pycom17g10520
rosa_chinensis	RchiOBHm_Chr2g0156551
rosa_laevigata	RLG00000020920
rosa_multiflora	Rmu_sc0002717.1_g000003
rosa_roxburghii	Rroxscaffold_2G00092950
rosa_rugosa	Rorug02G0454100 Rorug02G0454200 Rorug02G0454300
rosa_samantha	Rh2AG520000 Rh2BG532500 Rh2CG505000 Rh2DG541400
rosa_wichuraiana	Rw2G042870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1813
Acc36I	ACCTGC	4 cut(s)	449, 727, 1813, 2690
AccI	GTMKAC	2 cut(s)	526, 705
AccII	CGCG	1 cut(s)	2754
AciI	CCGC	8 cut(s)	374, 986, 1036, 1390, 1642, 2438, 2463, 2847
AclI	AACGTT	3 cut(s)	403, 826, 2838
AclWI	GGATC	4 cut(s)	26, 39, 1169, 1478
AcoI	YGGCCR	1 cut(s)	160
AcsI	RAATTY	7 cut(s)	40, 195, 757, 876, 1370, 2575, 2824
AcuI	CTGAAG	2 cut(s)	27, 159
AcvI	CACGTG	1 cut(s)	1190
AfaI	GTAC	4 cut(s)	1243, 1353, 2176, 2652
AfiI	CCNNNNNNNGG	4 cut(s)	234, 1063, 2103, 2104
AflII	CTTAAG	1 cut(s)	1897
AflIII	ACRYGT	3 cut(s)	626, 1614, 2797
AjnI	CCWGG	8 cut(s)	78, 472, 1056, 1441, 1891, 2371, 2570, 2765
AloI	GAACNNNNNNTCC	2 cut(s)	2828, 2860
Alw21I	GWGCWC	3 cut(s)	1300, 1525, 2380
AlwI	GGATC	4 cut(s)	26, 39, 1169, 1478
AlwNI	CAGNNNCTG	1 cut(s)	1856
Ama87I	CYCGRG	1 cut(s)	497
AoxI	GGCC	4 cut(s)	160, 1284, 1639, 2742
ApeKI	GCWGC	9 cut(s)	248, 251, 383, 692, 1109, 1118, 1151, 1856, 2639
ApoI	RAATTY	7 cut(s)	40, 195, 757, 876, 1370, 2575, 2824
AseI	ATTAAT	1 cut(s)	332
Asp700I	GAANNNNTTC	2 cut(s)	1308, 1867
AspLEI	GCGC	2 cut(s)	2754, 2756
AspS9I	GGNCC	7 cut(s)	293, 739, 1284, 1448, 1639, 2079, 2830
AsuHPI	GGTGA	5 cut(s)	299, 580, 614, 1184, 1571
AvaI	CYCGRG	1 cut(s)	497
AvaII	GGWCC	5 cut(s)	293, 739, 1448, 2079, 2830
BalI	TGGCCA	1 cut(s)	162
BamHI	GGATCC	1 cut(s)	31
BanII	GRGCYC	2 cut(s)	1300, 2380
BbrPI	CACGTG	1 cut(s)	1190
BbsI	GAAGAC	4 cut(s)	188, 1662, 1708, 2637
Bbv12I	GWGCWC	3 cut(s)	1300, 1525, 2380
BbvI	GCAGC	9 cut(s)	235, 263, 370, 704, 1121, 1130, 1163, 1843, 2651
BceAI	ACGGC	4 cut(s)	1610, 1652, 2414, 2765
BcgI	CGANNNNNNTGC	2 cut(s)	478, 512
BciT130I	CCWGG	8 cut(s)	80, 474, 1058, 1443, 1893, 2373, 2572, 2767
BciVI	GTATCC	1 cut(s)	1629
BfaI	CTAG	3 cut(s)	1313, 2183, 2709
BfmI	CTRYAG	3 cut(s)	249, 651, 774
BfrI	CTTAAG	1 cut(s)	1897
BfuAI	ACCTGC	4 cut(s)	449, 727, 1813, 2690
BfuI	GTATCC	1 cut(s)	1629
BglI	GCCNNNNNGGC	1 cut(s)	2741
BglII	AGATCT	2 cut(s)	10, 1315
Bme1390I	CCNGG	8 cut(s)	80, 474, 1058, 1443, 1893, 2373, 2572, 2767
Bme18I	GGWCC	5 cut(s)	293, 739, 1448, 2079, 2830
BmeT110I	CYCGRG	1 cut(s)	497
BmgT120I	GGNCC	7 cut(s)	293, 739, 1284, 1448, 1639, 2079, 2830
BmiI	GGNNCC	6 cut(s)	33, 224, 294, 1890, 2080, 2832
BmrFI	CCNGG	8 cut(s)	80, 474, 1058, 1443, 1893, 2373, 2572, 2767
BpiI	GAAGAC	4 cut(s)	188, 1662, 1708, 2637
BpmI	CTGGAG	5 cut(s)	1148, 1284, 1803, 2394, 2505
BpuEI	CTTGAG	2 cut(s)	2384, 2578
Bsa29I	ATCGAT	1 cut(s)	60
BsaAI	YACGTR	1 cut(s)	1190
BsaI	GGTCTC	5 cut(s)	531, 1398, 1502, 2216, 2362
BsaJI	CCNNGG	6 cut(s)	78, 1441, 1451, 1490, 1531, 2523
BsaWI	WCCGGW	1 cut(s)	665
BsaXI	ACNNNNNCTCC	4 cut(s)	1527, 1557, 1776, 1806
Bsc4I	CCNNNNNNNGG	4 cut(s)	234, 1063, 2103, 2104
BseBI	CCWGG	8 cut(s)	80, 474, 1058, 1443, 1893, 2373, 2572, 2767
BseCI	ATCGAT	1 cut(s)	60
BseDI	CCNNGG	6 cut(s)	78, 1441, 1451, 1490, 1531, 2523
BseGI	GGATG	7 cut(s)	125, 844, 969, 1000, 2357, 2477, 2483
BseLI	CCNNNNNNNGG	4 cut(s)	234, 1063, 2103, 2104
BseMII	CTCAG	6 cut(s)	27, 92, 442, 1317, 1497, 2672
BsePI	GCGCGC	1 cut(s)	2752
BseRI	GAGGAG	1 cut(s)	377
BseXI	GCAGC	9 cut(s)	235, 263, 370, 704, 1121, 1130, 1163, 1843, 2651
Bsh1236I	CGCG	1 cut(s)	2754
BshFI	GGCC	4 cut(s)	162, 1286, 1641, 2744
BshVI	ATCGAT	1 cut(s)	60
BsiHKAI	GWGCWC	3 cut(s)	1300, 1525, 2380
BsiHKCI	CYCGRG	1 cut(s)	497
BsiSI	CCGG	1 cut(s)	666
BslFI	GGGAC	2 cut(s)	738, 2092
BslI	CCNNNNNNNGG	4 cut(s)	234, 1063, 2103, 2104
BsmBI	CGTCTC	1 cut(s)	1585
BsmFI	GGGAC	2 cut(s)	738, 2092
BsnI	GGCC	4 cut(s)	162, 1286, 1641, 2744
Bso31I	GGTCTC	5 cut(s)	531, 1398, 1502, 2216, 2362
BsoBI	CYCGRG	1 cut(s)	497
Bsp1286I	GDGCHC	3 cut(s)	1300, 1525, 2380
Bsp143I	GATC	6 cut(s)	10, 31, 1174, 1315, 1483, 2101
BspACI	CCGC	8 cut(s)	374, 986, 1036, 1390, 1642, 2438, 2463, 2847
BspANI	GGCC	4 cut(s)	162, 1286, 1641, 2744
BspCNI	CTCAG	6 cut(s)	28, 93, 441, 1318, 1498, 2671
BspDI	ATCGAT	1 cut(s)	60
BspFNI	CGCG	1 cut(s)	2754
BspHI	TCATGA	1 cut(s)	2085
BspLI	GGNNCC	6 cut(s)	33, 224, 294, 1890, 2080, 2832
BspMAI	CTGCAG	1 cut(s)	253
BspMI	ACCTGC	4 cut(s)	449, 727, 1813, 2690
BspPI	GGATC	4 cut(s)	26, 39, 1169, 1478
BspTI	CTTAAG	1 cut(s)	1897
BspTNI	GGTCTC	5 cut(s)	531, 1398, 1502, 2216, 2362
BssECI	CCNNGG	6 cut(s)	78, 1441, 1451, 1490, 1531, 2523
BssHII	GCGCGC	1 cut(s)	2752
BssMI	GATC	6 cut(s)	10, 31, 1174, 1315, 1483, 2101
BssT1I	CCWWGG	3 cut(s)	1451, 1531, 2523
Bst2UI	CCWGG	8 cut(s)	80, 474, 1058, 1443, 1893, 2373, 2572, 2767
Bst6I	CTCTTC	3 cut(s)	171, 1342, 1633
BstAFI	CTTAAG	1 cut(s)	1897
BstAPI	GCANNNNNTGC	2 cut(s)	1148, 1216
BstBAI	YACGTR	1 cut(s)	1190
BstC8I	GCNNGC	3 cut(s)	1288, 1388, 2754
BstDEI	CTNAG	9 cut(s)	36, 101, 209, 428, 1326, 1506, 2610, 2643, 2658
BstEII	GGTNACC	1 cut(s)	1559
BstENI	CCTNNNNNAGG	1 cut(s)	1061
BstF5I	GGATG	7 cut(s)	125, 844, 969, 1000, 2357, 2477, 2483
BstFNI	CGCG	1 cut(s)	2754
BstHHI	GCGC	2 cut(s)	2754, 2756
BstKTI	GATC	6 cut(s)	13, 34, 1177, 1318, 1486, 2104
BstMBI	GATC	6 cut(s)	10, 31, 1174, 1315, 1483, 2101
BstNI	CCWGG	8 cut(s)	80, 474, 1058, 1443, 1893, 2373, 2572, 2767
BstNSI	RCATGY	4 cut(s)	630, 1618, 1769, 2801
BstPI	GGTNACC	1 cut(s)	1559
BstSCI	CCNGG	8 cut(s)	78, 472, 1056, 1441, 1891, 2371, 2570, 2765
BstSFI	CTRYAG	3 cut(s)	249, 651, 774
BstUI	CGCG	1 cut(s)	2754
BstV1I	GCAGC	9 cut(s)	235, 263, 370, 704, 1121, 1130, 1163, 1843, 2651
BstV2I	GAAGAC	4 cut(s)	188, 1662, 1708, 2637
BstX2I	RGATCY	3 cut(s)	10, 31, 1315
BstYI	RGATCY	3 cut(s)	10, 31, 1315
Bsu15I	ATCGAT	1 cut(s)	60
BsuI	GTATCC	1 cut(s)	1629
BsuRI	GGCC	4 cut(s)	162, 1286, 1641, 2744
BsuTUI	ATCGAT	1 cut(s)	60
BtsCI	GGATG	7 cut(s)	125, 844, 969, 1000, 2357, 2477, 2483
BtsI	GCAGTG	2 cut(s)	446, 1842
BveI	ACCTGC	4 cut(s)	449, 727, 1813, 2690
Cac8I	GCNNGC	3 cut(s)	1288, 1388, 2754
CaiI	CAGNNNCTG	1 cut(s)	1856
CciI	TCATGA	1 cut(s)	2085
CfoI	GCGC	2 cut(s)	2754, 2756
Cfr13I	GGNCC	7 cut(s)	293, 739, 1284, 1448, 1639, 2079, 2830
ClaI	ATCGAT	1 cut(s)	60
CsiI	ACCWGGT	1 cut(s)	1056
Csp6I	GTAC	4 cut(s)	1242, 1352, 2175, 2651
CspCI	CAANNNNNGTGG	4 cut(s)	700, 735, 2215, 2250
CviQI	GTAC	4 cut(s)	1242, 1352, 2175, 2651
DdeI	CTNAG	9 cut(s)	36, 101, 209, 428, 1326, 1506, 2610, 2643, 2658
DpnI	GATC	6 cut(s)	12, 33, 1176, 1317, 1485, 2103
DpnII	GATC	6 cut(s)	10, 31, 1174, 1315, 1483, 2101
DraI	TTTAAA	1 cut(s)	1812
EaeI	YGGCCR	1 cut(s)	160
Eam1104I	CTCTTC	3 cut(s)	171, 1342, 1633
EarI	CTCTTC	3 cut(s)	171, 1342, 1633
EciI	GGCGGA	1 cut(s)	2836
Ecl136II	GAGCTC	2 cut(s)	1298, 2378
Eco130I	CCWWGG	3 cut(s)	1451, 1531, 2523
Eco24I	GRGCYC	2 cut(s)	1300, 2380
Eco31I	GGTCTC	5 cut(s)	531, 1398, 1502, 2216, 2362
Eco47I	GGWCC	5 cut(s)	293, 739, 1448, 2079, 2830
Eco53kI	GAGCTC	2 cut(s)	1298, 2378
Eco57I	CTGAAG	2 cut(s)	27, 159
Eco72I	CACGTG	1 cut(s)	1190
Eco88I	CYCGRG	1 cut(s)	497
Eco91I	GGTNACC	1 cut(s)	1559
EcoICRI	GAGCTC	2 cut(s)	1298, 2378
EcoNI	CCTNNNNNAGG	1 cut(s)	1061
EcoO109I	RGGNCCY	2 cut(s)	293, 739
EcoO65I	GGTNACC	1 cut(s)	1559
EcoRI	GAATTC	1 cut(s)	876
EcoRII	CCWGG	8 cut(s)	78, 472, 1056, 1441, 1891, 2371, 2570, 2765
EcoT14I	CCWWGG	3 cut(s)	1451, 1531, 2523
EcoT38I	GRGCYC	2 cut(s)	1300, 2380
ErhI	CCWWGG	3 cut(s)	1451, 1531, 2523
Esp3I	CGTCTC	1 cut(s)	1585
FaqI	GGGAC	2 cut(s)	738, 2092
FauI	CCCGC	2 cut(s)	367, 979
FauNDI	CATATG	1 cut(s)	2492
FblI	GTMKAC	2 cut(s)	526, 705
FokI	GGATG	7 cut(s)	112, 851, 976, 1007, 2364, 2484, 2490
FriOI	GRGCYC	2 cut(s)	1300, 2380
FspBI	CTAG	3 cut(s)	1313, 2183, 2709
GlaI	GCGC	2 cut(s)	2753, 2755
GsuI	CTGGAG	5 cut(s)	1148, 1284, 1803, 2394, 2505
HaeIII	GGCC	4 cut(s)	162, 1286, 1641, 2744
HapII	CCGG	1 cut(s)	666
HhaI	GCGC	2 cut(s)	2754, 2756
Hin6I	GCGC	2 cut(s)	2752, 2754
HinP1I	GCGC	2 cut(s)	2752, 2754
HincII	GTYRAC	2 cut(s)	553, 706
HindII	GTYRAC	2 cut(s)	553, 706
HpaII	CCGG	1 cut(s)	666
HphI	GGTGA	5 cut(s)	299, 580, 614, 1184, 1571
Hpy166II	GTNNAC	6 cut(s)	527, 553, 673, 706, 1234, 1678
Hpy8I	GTNNAC	6 cut(s)	527, 553, 673, 706, 1234, 1678
HpyAV	CCTTC	9 cut(s)	527, 863, 1231, 1573, 1632, 1687, 2239, 2254, 2620
HpyCH4IV	ACGT	5 cut(s)	403, 717, 826, 1189, 2838
HpyF3I	CTNAG	9 cut(s)	36, 101, 209, 428, 1326, 1506, 2610, 2643, 2658
HpySE526I	ACGT	5 cut(s)	403, 717, 826, 1189, 2838
HspAI	GCGC	2 cut(s)	2752, 2754
Kzo9I	GATC	6 cut(s)	10, 31, 1174, 1315, 1483, 2101
LmnI	GCTCC	3 cut(s)	1295, 1303, 2375
Lsp1109I	GCAGC	9 cut(s)	235, 263, 370, 704, 1121, 1130, 1163, 1843, 2651
MabI	ACCWGGT	1 cut(s)	1056
MaeI	CTAG	3 cut(s)	1313, 2183, 2709
MaeII	ACGT	5 cut(s)	403, 717, 826, 1189, 2838
MaeIII	GTNAC	6 cut(s)	586, 907, 1007, 1559, 2191, 2335
MalI	GATC	6 cut(s)	12, 33, 1176, 1317, 1485, 2103
MboI	GATC	6 cut(s)	10, 31, 1174, 1315, 1483, 2101
MfeI	CAATTG	5 cut(s)	882, 918, 972, 1143, 1572
MflI	RGATCY	3 cut(s)	10, 31, 1315
MhlI	GDGCHC	3 cut(s)	1300, 1525, 2380
MlsI	TGGCCA	1 cut(s)	162
MluNI	TGGCCA	1 cut(s)	162
MlyI	GAGTC	5 cut(s)	584, 701, 1256, 1545, 2496
MmeI	TCCRAC	5 cut(s)	9, 1753, 2114, 2289, 2708
Mox20I	TGGCCA	1 cut(s)	162
MroXI	GAANNNNTTC	2 cut(s)	1308, 1867
MscI	TGGCCA	1 cut(s)	162
MseI	TTAA	9 cut(s)	332, 866, 1071, 1527, 1794, 1811, 1883, 1898, 2252
MslI	CAYNNNNRTG	4 cut(s)	806, 1500, 1731, 2020
Msp20I	TGGCCA	1 cut(s)	162
MspA1I	CMGCKG	1 cut(s)	515
MspCI	CTTAAG	1 cut(s)	1897
MspI	CCGG	1 cut(s)	666
MspR9I	CCNGG	8 cut(s)	80, 474, 1058, 1443, 1893, 2373, 2572, 2767
MunI	CAATTG	5 cut(s)	882, 918, 972, 1143, 1572
MvaI	CCWGG	8 cut(s)	80, 474, 1058, 1443, 1893, 2373, 2572, 2767
MvnI	CGCG	1 cut(s)	2754
NdeI	CATATG	1 cut(s)	2492
NdeII	GATC	6 cut(s)	10, 31, 1174, 1315, 1483, 2101
NlaIV	GGNNCC	6 cut(s)	33, 224, 294, 1890, 2080, 2832
NmuCI	GTSAC	4 cut(s)	586, 907, 1007, 1559
NspI	RCATGY	4 cut(s)	630, 1618, 1769, 2801
PagI	TCATGA	1 cut(s)	2085
PaqCI	CACCTGC	1 cut(s)	1813
PauI	GCGCGC	1 cut(s)	2752
PciI	ACATGT	3 cut(s)	626, 1614, 2797
PdmI	GAANNNNTTC	2 cut(s)	1308, 1867
PfeI	GAWTC	5 cut(s)	843, 1132, 1309, 1844, 2804
PleI	GAGTC	5 cut(s)	583, 701, 1256, 1544, 2495
PmaCI	CACGTG	1 cut(s)	1190
PmlI	CACGTG	1 cut(s)	1190
PpsI	GAGTC	5 cut(s)	583, 701, 1256, 1544, 2495
Ppu21I	YACGTR	1 cut(s)	1190
PpuMI	RGGWCCY	2 cut(s)	293, 739
PscI	ACATGT	3 cut(s)	626, 1614, 2797
PshBI	ATTAAT	1 cut(s)	332
Psp124BI	GAGCTC	2 cut(s)	1300, 2380
Psp1406I	AACGTT	3 cut(s)	403, 826, 2838
Psp5II	RGGWCCY	2 cut(s)	293, 739
Psp6I	CCWGG	8 cut(s)	78, 472, 1056, 1441, 1891, 2371, 2570, 2765
PspCI	CACGTG	1 cut(s)	1190
PspEI	GGTNACC	1 cut(s)	1559
PspGI	CCWGG	8 cut(s)	78, 472, 1056, 1441, 1891, 2371, 2570, 2765
PspN4I	GGNNCC	6 cut(s)	33, 224, 294, 1890, 2080, 2832
PspPI	GGNCC	7 cut(s)	293, 739, 1284, 1448, 1639, 2079, 2830
PspPPI	RGGWCCY	2 cut(s)	293, 739
PstI	CTGCAG	1 cut(s)	253
PstNI	CAGNNNCTG	1 cut(s)	1856
PsuI	RGATCY	3 cut(s)	10, 31, 1315
PteI	GCGCGC	1 cut(s)	2752
PvuII	CAGCTG	1 cut(s)	515
RsaI	GTAC	4 cut(s)	1243, 1353, 2176, 2652
RsaNI	GTAC	4 cut(s)	1242, 1352, 2175, 2651
RseI	CAYNNNNRTG	4 cut(s)	806, 1500, 1731, 2020
SacI	GAGCTC	2 cut(s)	1300, 2380
SalI	GTCGAC	1 cut(s)	704
SaqAI	TTAA	9 cut(s)	332, 866, 1071, 1527, 1794, 1811, 1883, 1898, 2252
Sau3AI	GATC	6 cut(s)	10, 31, 1174, 1315, 1483, 2101
Sau96I	GGNCC	7 cut(s)	293, 739, 1284, 1448, 1639, 2079, 2830
SchI	GAGTC	5 cut(s)	584, 701, 1256, 1545, 2496
ScrFI	CCNGG	8 cut(s)	80, 474, 1058, 1443, 1893, 2373, 2572, 2767
SduI	GDGCHC	3 cut(s)	1300, 1525, 2380
SexAI	ACCWGGT	1 cut(s)	1056
SfcI	CTRYAG	3 cut(s)	249, 651, 774
SinI	GGWCC	5 cut(s)	293, 739, 1448, 2079, 2830
SmiMI	CAYNNNNRTG	4 cut(s)	806, 1500, 1731, 2020
SmlI	CTYRAG	3 cut(s)	1897, 2363, 2557
SmoI	CTYRAG	3 cut(s)	1897, 2363, 2557
SsiI	CCGC	8 cut(s)	374, 986, 1036, 1390, 1642, 2438, 2463, 2847
SspI	AATATT	1 cut(s)	1198
SspMI	CTAG	3 cut(s)	1313, 2183, 2709
SstI	GAGCTC	2 cut(s)	1300, 2380
StyD4I	CCNGG	8 cut(s)	78, 472, 1056, 1441, 1891, 2371, 2570, 2765
StyI	CCWWGG	3 cut(s)	1451, 1531, 2523
TaiI	ACGT	5 cut(s)	406, 720, 829, 1192, 2841
TaqI	TCGA	5 cut(s)	60, 705, 931, 1260, 1930
TatI	WGTACW	1 cut(s)	1351
TauI	GCSGC	2 cut(s)	1644, 2466
TfiI	GAWTC	5 cut(s)	843, 1132, 1309, 1844, 2804
Tru1I	TTAA	9 cut(s)	332, 866, 1071, 1527, 1794, 1811, 1883, 1898, 2252
Tru9I	TTAA	9 cut(s)	332, 866, 1071, 1527, 1794, 1811, 1883, 1898, 2252
TseFI	GTSAC	4 cut(s)	586, 907, 1007, 1559
TseI	GCWGC	9 cut(s)	248, 251, 383, 692, 1109, 1118, 1151, 1856, 2639
Tsp45I	GTSAC	4 cut(s)	586, 907, 1007, 1559
TspDTI	ATGAA	8 cut(s)	114, 346, 621, 1620, 1749, 1964, 2035, 2274
TspGWI	ACGGA	1 cut(s)	1901
Vha464I	CTTAAG	1 cut(s)	1897
VpaK11BI	GGWCC	5 cut(s)	293, 739, 1448, 2079, 2830
VspI	ATTAAT	1 cut(s)	332
XagI	CCTNNNNNAGG	1 cut(s)	1061
XapI	RAATTY	7 cut(s)	40, 195, 757, 876, 1370, 2575, 2824
XbaI	TCTAGA	1 cut(s)	1312
XceI	RCATGY	4 cut(s)	630, 1618, 1769, 2801
XcmI	CCANNNNNNNNNTGG	1 cut(s)	718
XmiI	GTMKAC	2 cut(s)	526, 705
XmnI	GAANNNNTTC	2 cut(s)	1308, 1867
XspI	CTAG	3 cut(s)	1313, 2183, 2709

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.