FvH4_6g44940

secretory carrier-associated membrane protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0005596
Physical Location & Seq
Reverse (-)
34541730 .. 34545129
3400 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g44940.t1

Sequence Viewer

Length: 849 bp
ATGAGTCGCTACGAAGCTAACCCTTTCGCTGAAGATGATGTTAATCCCTTTGCGGTAACTCACAATGGAGGTGGCTCAAGGCTTACACCCCTTCCTCCTGAACCCTATGATCGCGGTGCAACGGTTGATATACCTCTTGATAATTCAAGGAGTTTCAAGAAAAAGGAGAAGGAACTCAAAGCTAAAGAGGCTGAATTGAGTAGGAAGGAACGGGAATTAAGGAAGCAAGAAGAGGCCATAGAAAAAGCTGGTGGAAAAGTTGTTAAAGACAAGAAAAACTTTCCTCCATTTGCCCCCATAATTCATCATGACATTCAAAACGATGTACCGATCCACCTACAGAAGATCATGTATGTTGCGTTCAGTACATTTTTGGGTTTCGCTTTCTGTATGTTCTGGAGTATTGTTGCAGCTTCCGTATATTGTGTCAATGGTGGATGGCTTGGGACTGGTATAGGCGCTGTCATTTTGTCTATCTTCAACTTCATCATAGTGTGTCCTCTAGCATATTTTCTCTGGTATCGCCCTCTTTATCGCGCTATGAGGACCGATAGTGCCCTAAGTTTTGCTGGGTTTTTCTTGAGTTACTGCCTCCATATTGGATTTTGCGTCTTTTGTTCAATTTCTCCTCCAGTTCTCTGGTCGGGAGCAACTATTGCAGGTATTATCCCTGCAGTCGTATATGCTCGGAACCTTTTTGTTCAGATGTTTTACTTCATAGGATTTGGGCTGTATGTCTGCGAAACACTCCTCTGCTTGTGGGTTCTTAAGCAAGTGTACACGTACTTCAGAGGCAGCGGAAAAGGTCCTTCAGAAGCGACGCGTGAGGCTATGAGGGCAGCAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SCAMP

Protein Analysis

283

Amino Acids

31.67

Weight (kDa)

8.82

Isoelectric Point (pI)

39.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SCAMP PF04144 91 - 265 5.2e-43 SCAMP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 650
AccII CGCG 3 cut(s) 114, 537, 823
AciI CCGC 3 cut(s) 53, 114, 798
AclWI GGATC 1 cut(s) 325
AcuI CTGAAG 3 cut(s) 51, 772, 795
AfaI GTAC 4 cut(s) 327, 367, 779, 785
AflII CTTAAG 1 cut(s) 767
AflIII ACRYGT 2 cut(s) 780, 821
AgsI TTSAA 5 cut(s) 147, 157, 317, 481, 621
AluBI AGCT 4 cut(s) 17, 182, 248, 413
AluI AGCT 4 cut(s) 17, 182, 248, 413
AlwI GGATC 1 cut(s) 325
AoxI GGCC 1 cut(s) 234
ApeKI GCWGC 3 cut(s) 410, 795, 839
AspLEI GCGC 2 cut(s) 461, 539
AspS9I GGNCC 2 cut(s) 546, 806
AvaII GGWCC 2 cut(s) 546, 806
BaeGI GKGCMC 1 cut(s) 559
BarI GAAGNNNNNNTAC 2 cut(s) 770, 802
BbvI GCAGC 2 cut(s) 422, 807
BccI CCATC 1 cut(s) 432
BfaI CTAG 1 cut(s) 503
BfmI CTRYAG 2 cut(s) 338, 672
BfoI RGCGCY 1 cut(s) 462
BfrI CTTAAG 1 cut(s) 767
BfuAI ACCTGC 1 cut(s) 650
BisI GCNGC 3 cut(s) 411, 796, 840
BlsI GCNGC 3 cut(s) 412, 797, 841
Bme18I GGWCC 2 cut(s) 546, 806
BmgT120I GGNCC 2 cut(s) 546, 806
BmiI GGNNCC 1 cut(s) 692
BpmI CTGGAG 2 cut(s) 418, 615
BpuEI CTTGAG 2 cut(s) 61, 601
BsaAI YACGTR 1 cut(s) 783
BsaBI GATNNNNATC 1 cut(s) 42
Bse1I ACTGG 2 cut(s) 454, 632
Bse8I GATNNNNATC 1 cut(s) 42
BseGI GGATG 1 cut(s) 443
BseJI GATNNNNATC 1 cut(s) 42
BseNI ACTGG 2 cut(s) 454, 632
BseRI GAGGAG 2 cut(s) 618, 740
BseSI GKGCMC 1 cut(s) 559
BseXI GCAGC 2 cut(s) 422, 807
BseYI CCCAGC 1 cut(s) 569
Bsh1236I CGCG 3 cut(s) 114, 537, 823
BshFI GGCC 1 cut(s) 236
BslFI GGGAC 1 cut(s) 460
BsmFI GGGAC 1 cut(s) 460
BsnI GGCC 1 cut(s) 236
Bsp1286I GDGCHC 1 cut(s) 559
Bsp1407I TGTACA 1 cut(s) 777
Bsp143I GATC 3 cut(s) 109, 330, 345
BspACI CCGC 3 cut(s) 53, 114, 798
BspANI GGCC 1 cut(s) 236
BspFNI CGCG 3 cut(s) 114, 537, 823
BspHI TCATGA 1 cut(s) 307
BspLI GGNNCC 1 cut(s) 692
BspMAI CTGCAG 1 cut(s) 676
BspMI ACCTGC 1 cut(s) 650
BspPI GGATC 1 cut(s) 325
BspTI CTTAAG 1 cut(s) 767
BsrGI TGTACA 1 cut(s) 777
BsrI ACTGG 2 cut(s) 454, 632
BssMI GATC 3 cut(s) 109, 330, 345
Bst4CI ACNGT 1 cut(s) 124
Bst6I CTCTTC 1 cut(s) 225
BstAFI CTTAAG 1 cut(s) 767
BstAPI GCANNNNNTGC 1 cut(s) 656
BstAUI TGTACA 1 cut(s) 777
BstBAI YACGTR 1 cut(s) 783
BstDEI CTNAG 1 cut(s) 560
BstF5I GGATG 1 cut(s) 443
BstFNI CGCG 3 cut(s) 114, 537, 823
BstH2I RGCGCY 1 cut(s) 462
BstHHI GCGC 2 cut(s) 461, 539
BstKTI GATC 3 cut(s) 112, 333, 348
BstMBI GATC 3 cut(s) 109, 330, 345
BstMWI GCNNNNNNNGC 3 cut(s) 188, 656, 836
BstSFI CTRYAG 2 cut(s) 338, 672
BstSLI GKGCMC 1 cut(s) 559
BstUI CGCG 3 cut(s) 114, 537, 823
BstV1I GCAGC 2 cut(s) 422, 807
BstXI CCANNNNNNTGG 1 cut(s) 639
BsuRI GGCC 1 cut(s) 236
BtsCI GGATG 1 cut(s) 443
BveI ACCTGC 1 cut(s) 650
CciI TCATGA 1 cut(s) 307
CfoI GCGC 2 cut(s) 461, 539
Cfr13I GGNCC 2 cut(s) 546, 806
CseI GACGC 2 cut(s) 598, 829
Csp6I GTAC 4 cut(s) 326, 366, 778, 784
CspCI CAANNNNNGTGG 2 cut(s) 52, 87
CviAII CATG 2 cut(s) 308, 349
CviQI GTAC 4 cut(s) 326, 366, 778, 784
DdeI CTNAG 1 cut(s) 560
DpnI GATC 3 cut(s) 111, 332, 347
DpnII GATC 3 cut(s) 109, 330, 345
Eam1104I CTCTTC 1 cut(s) 225
EarI CTCTTC 1 cut(s) 225
Eco47I GGWCC 2 cut(s) 546, 806
Eco57I CTGAAG 3 cut(s) 51, 772, 795
EcoO109I RGGNCCY 1 cut(s) 806
FaeI CATG 2 cut(s) 311, 352
FalI AAGNNNNNCTT 2 cut(s) 263, 295
FaqI GGGAC 1 cut(s) 460
FatI CATG 2 cut(s) 307, 348
Fnu4HI GCNGC 3 cut(s) 411, 796, 840
FokI GGATG 1 cut(s) 450
Fsp4HI GCNGC 3 cut(s) 411, 796, 840
FspBI CTAG 1 cut(s) 503
GlaI GCGC 2 cut(s) 460, 538
GluI GCNGC 3 cut(s) 411, 796, 840
GsaI CCCAGC 1 cut(s) 573
GsuI CTGGAG 2 cut(s) 418, 615
HaeII RGCGCY 1 cut(s) 462
HaeIII GGCC 1 cut(s) 236
HgaI GACGC 2 cut(s) 598, 829
HhaI GCGC 2 cut(s) 461, 539
Hin1II CATG 2 cut(s) 311, 352
Hin6I GCGC 2 cut(s) 459, 537
HinP1I GCGC 2 cut(s) 459, 537
HinfI GANTC 1 cut(s) 4
Hpy166II GTNNAC 2 cut(s) 778, 780
Hpy188I TCNGA 4 cut(s) 690, 705, 791, 814
Hpy188III TCNNGA 7 cut(s) 98, 137, 157, 308, 397, 580, 645
Hpy8I GTNNAC 2 cut(s) 778, 780
Hpy99I CGWCG 1 cut(s) 823
HpyAV CCTTC 4 cut(s) 101, 163, 199, 819
HpyCH4III ACNGT 1 cut(s) 124
HpyCH4IV ACGT 1 cut(s) 782
HpyCH4V TGCA 4 cut(s) 119, 410, 659, 674
HpyF10VI GCNNNNNNNGC 3 cut(s) 188, 656, 836
HpyF3I CTNAG 1 cut(s) 560
HpySE526I ACGT 1 cut(s) 782
Hsp92II CATG 2 cut(s) 311, 352
HspAI GCGC 2 cut(s) 459, 537
Kzo9I GATC 3 cut(s) 109, 330, 345
LmnI GCTCC 1 cut(s) 647
Lsp1109I GCAGC 2 cut(s) 422, 807
MaeI CTAG 1 cut(s) 503
MaeII ACGT 1 cut(s) 782
MaeIII GTNAC 2 cut(s) 55, 584
MalI GATC 3 cut(s) 111, 332, 347
MboI GATC 3 cut(s) 109, 330, 345
MboII GAAGA 4 cut(s) 44, 242, 355, 469
MhlI GDGCHC 1 cut(s) 559
MluCI AATT 6 cut(s) 142, 194, 215, 300, 621, 843
MluI ACGCGT 1 cut(s) 821
MlyI GAGTC 1 cut(s) 13
MseI TTAA 4 cut(s) 42, 218, 264, 768
MslI CAYNNNNRTG 1 cut(s) 491
MspA1I CMGCKG 1 cut(s) 798
MspCI CTTAAG 1 cut(s) 767
MvnI CGCG 3 cut(s) 114, 537, 823
MwoI GCNNNNNNNGC 3 cut(s) 188, 656, 836
NdeII GATC 3 cut(s) 109, 330, 345
NlaIII CATG 2 cut(s) 311, 352
NlaIV GGNNCC 1 cut(s) 692
PagI TCATGA 1 cut(s) 307
PkrI GCNGC 3 cut(s) 412, 797, 841
PleI GAGTC 1 cut(s) 12
PpsI GAGTC 1 cut(s) 12
Ppu21I YACGTR 1 cut(s) 783
PpuMI RGGWCCY 1 cut(s) 806
Psp5II RGGWCCY 1 cut(s) 806
PspFI CCCAGC 1 cut(s) 569
PspN4I GGNNCC 1 cut(s) 692
PspPI GGNCC 2 cut(s) 546, 806
PspPPI RGGWCCY 1 cut(s) 806
PsrI GAACNNNNNNTAC 2 cut(s) 344, 376
PstI CTGCAG 1 cut(s) 676
RsaI GTAC 4 cut(s) 327, 367, 779, 785
RsaNI GTAC 4 cut(s) 326, 366, 778, 784
RseI CAYNNNNRTG 1 cut(s) 491
SaqAI TTAA 4 cut(s) 42, 218, 264, 768
SatI GCNGC 3 cut(s) 411, 796, 840
Sau3AI GATC 3 cut(s) 109, 330, 345
Sau96I GGNCC 2 cut(s) 546, 806
SchI GAGTC 1 cut(s) 13
SduI GDGCHC 1 cut(s) 559
SfcI CTRYAG 2 cut(s) 338, 672
SinI GGWCC 2 cut(s) 546, 806
SmiMI CAYNNNNRTG 1 cut(s) 491
SmlI CTYRAG 3 cut(s) 76, 580, 767
SmoI CTYRAG 3 cut(s) 76, 580, 767
Sse9I AATT 6 cut(s) 142, 194, 215, 300, 621, 843
SsiI CCGC 3 cut(s) 53, 114, 798
SspMI CTAG 1 cut(s) 503
TaaI ACNGT 1 cut(s) 124
TaiI ACGT 1 cut(s) 785
TaqII GACCGA 1 cut(s) 563
TasI AATT 6 cut(s) 142, 194, 215, 300, 621, 843
TatI WGTACW 2 cut(s) 365, 777
Tru1I TTAA 4 cut(s) 42, 218, 264, 768
Tru9I TTAA 4 cut(s) 42, 218, 264, 768
TseI GCWGC 3 cut(s) 410, 795, 839
TspDTI ATGAA 3 cut(s) 293, 475, 706
TspGWI ACGGA 1 cut(s) 406
Vha464I CTTAAG 1 cut(s) 767
VpaK11BI GGWCC 2 cut(s) 546, 806
XspI CTAG 1 cut(s) 503
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.