Rh2CG544700

secretory carrier-associated membrane protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0005596
Physical Location & Seq
Reverse (-)
72278720 .. 72282431
3712 bp
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UTR
Exon/CDS
Intron
Rh2CG544700.1

Sequence Viewer

Length: 630 bp
ATGAGTCGTTACGATGCTAACCCCTTCGCTGAGGAAGATGTTAATCCCTTTGCGGATGGTAAAGGTCTTTCACCCCTTCCCCCTGAACGCTATGATCGCGGTGCAACGATTGATATACCTCTTGATAATTCTAGGAGTTTAAAAGACAAGGAGAAGGAACTCAAAGCTAGAGAGGCTGAATTGAAAAGGAGGGAACAGGAAATAAAGCGGAAAGAAGAGAACGTAAAAAAAGATGGAGGTTTTAGTACCGACAAAAACTGGCCTCCATTTTACCCCATCATTCATCATGACATTGCAAATGAAATACCAATCCACCTACAGAAGATCCAGTATGTTGCGTTGACGACATATTTGGGTTTAGTTGTGACTCTGTTGTGGAATATTATTGCGGTTACTGTATTTTTTTTCCATGGAGGAGGTATAATCAATTGGATAATGTCTATTATCTACTTCGTAACAACTTGTCCTCTTGCATTTTTTCTCTGGTATCGCCCTCTTTATCGTGCTATGAGGACCGATAGTTCCCTAAGTTTTGCTGGGTTTTTCCTCTGTTACACTTTCCATATTGGATTTTGCATCTTTTGTGCACTTGCTCCTCCAATTATCTCGGGAGGACTATCTCTTACCTGA

Protein Analysis

209

Amino Acids

23.93

Weight (kDa)

6.96

Isoelectric Point (pI)

50.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SCAMP PF04144 85 - 200 6e-42 SCAMP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 99
AciI CCGC 4 cut(s) 53, 99, 208, 389
AclWI GGATC 1 cut(s) 319
AfaI GTAC 1 cut(s) 247
AgsI TTSAA 1 cut(s) 184
AloI GAACNNNNNNTCC 2 cut(s) 505, 537
AluBI AGCT 1 cut(s) 167
AluI AGCT 1 cut(s) 167
Alw21I GWGCWC 1 cut(s) 589
Alw44I GTGCAC 1 cut(s) 585
AlwI GGATC 1 cut(s) 319
Ama87I CYCGRG 1 cut(s) 607
AoxI GGCC 1 cut(s) 260
ApaLI GTGCAC 1 cut(s) 585
ArsI GACNNNNNNTTYG 2 cut(s) 334, 366
AspS9I GGNCC 1 cut(s) 513
AsuHPI GGTGA 1 cut(s) 63
AvaI CYCGRG 1 cut(s) 607
AvaII GGWCC 1 cut(s) 513
BaeGI GKGCMC 1 cut(s) 589
Bbv12I GWGCWC 1 cut(s) 589
BbvCI CCTCAGC 1 cut(s) 30
BccI CCATC 3 cut(s) 50, 227, 284
BfaI CTAG 2 cut(s) 132, 168
BfmI CTRYAG 1 cut(s) 317
Bme18I GGWCC 1 cut(s) 513
BmeT110I CYCGRG 1 cut(s) 607
BmgT120I GGNCC 1 cut(s) 513
BmsI GCATC 2 cut(s) 4, 585
Bpu10I CCTNAGC 1 cut(s) 30
BsaBI GATNNNNATC 1 cut(s) 42
BsaJI CCNNGG 1 cut(s) 409
Bse1I ACTGG 2 cut(s) 263, 328
Bse3DI GCAATG 1 cut(s) 291
Bse8I GATNNNNATC 1 cut(s) 42
BseDI CCNNGG 1 cut(s) 409
BseGI GGATG 1 cut(s) 61
BseJI GATNNNNATC 1 cut(s) 42
BseMI GCAATG 1 cut(s) 291
BseMII CTCAG 1 cut(s) 21
BseNI ACTGG 2 cut(s) 263, 328
BseRI GAGGAG 2 cut(s) 429, 585
BseSI GKGCMC 1 cut(s) 589
BseYI CCCAGC 1 cut(s) 536
Bsh1236I CGCG 1 cut(s) 99
BshFI GGCC 1 cut(s) 262
BsiHKAI GWGCWC 1 cut(s) 589
BsiHKCI CYCGRG 1 cut(s) 607
BsnI GGCC 1 cut(s) 262
BsoBI CYCGRG 1 cut(s) 607
Bsp1286I GDGCHC 1 cut(s) 589
Bsp143I GATC 2 cut(s) 94, 324
Bsp19I CCATGG 1 cut(s) 409
BspACI CCGC 4 cut(s) 53, 99, 208, 389
BspANI GGCC 1 cut(s) 262
BspCNI CTCAG 1 cut(s) 22
BspFNI CGCG 1 cut(s) 99
BspHI TCATGA 1 cut(s) 286
BspPI GGATC 1 cut(s) 319
BsrDI GCAATG 1 cut(s) 291
BsrI ACTGG 2 cut(s) 263, 328
BssECI CCNNGG 1 cut(s) 409
BssMI GATC 2 cut(s) 94, 324
BssT1I CCWWGG 1 cut(s) 409
Bst4CI ACNGT 1 cut(s) 397
Bst6I CTCTTC 1 cut(s) 210
BstDEI CTNAG 2 cut(s) 30, 527
BstDSI CCRYGG 1 cut(s) 409
BstF5I GGATG 1 cut(s) 61
BstFNI CGCG 1 cut(s) 99
BstKTI GATC 2 cut(s) 97, 327
BstMBI GATC 2 cut(s) 94, 324
BstMWI GCNNNNNNNGC 2 cut(s) 96, 173
BstSFI CTRYAG 1 cut(s) 317
BstSLI GKGCMC 1 cut(s) 589
BstUI CGCG 1 cut(s) 99
BstX2I RGATCY 1 cut(s) 324
BstYI RGATCY 1 cut(s) 324
BsuRI GGCC 1 cut(s) 262
BtgI CCRYGG 1 cut(s) 409
BtsCI GGATG 1 cut(s) 61
CciI TCATGA 1 cut(s) 286
Cfr13I GGNCC 1 cut(s) 513
Csp6I GTAC 1 cut(s) 246
CviAII CATG 2 cut(s) 287, 410
CviJI RGCY 3 cut(s) 167, 176, 262
CviKI_1 RGCY 3 cut(s) 167, 176, 262
CviQI GTAC 1 cut(s) 246
DdeI CTNAG 2 cut(s) 30, 527
DpnI GATC 2 cut(s) 96, 326
DpnII GATC 2 cut(s) 94, 324
DraI TTTAAA 1 cut(s) 141
Eam1104I CTCTTC 1 cut(s) 210
EarI CTCTTC 1 cut(s) 210
Eco130I CCWWGG 1 cut(s) 409
Eco47I GGWCC 1 cut(s) 513
Eco88I CYCGRG 1 cut(s) 607
EcoT14I CCWWGG 1 cut(s) 409
ErhI CCWWGG 1 cut(s) 409
FaeI CATG 2 cut(s) 290, 413
FaiI YATR 9 cut(s) 93, 116, 288, 333, 349, 411, 422, 509, 564
FatI CATG 2 cut(s) 286, 409
FokI GGATG 1 cut(s) 68
FspBI CTAG 2 cut(s) 132, 168
GsaI CCCAGC 1 cut(s) 540
HaeIII GGCC 1 cut(s) 262
Hin1II CATG 2 cut(s) 290, 413
HincII GTYRAC 1 cut(s) 342
HindII GTYRAC 1 cut(s) 342
HinfI GANTC 2 cut(s) 4, 367
HphI GGTGA 1 cut(s) 63
Hpy166II GTNNAC 2 cut(s) 342, 587
Hpy188III TCNNGA 3 cut(s) 122, 287, 609
Hpy8I GTNNAC 2 cut(s) 342, 587
HpyAV CCTTC 3 cut(s) 34, 86, 148
HpyCH4III ACNGT 1 cut(s) 397
HpyCH4IV ACGT 1 cut(s) 222
HpyCH4V TGCA 5 cut(s) 104, 296, 473, 576, 587
HpyF10VI GCNNNNNNNGC 2 cut(s) 96, 173
HpyF3I CTNAG 2 cut(s) 30, 527
HpySE526I ACGT 1 cut(s) 222
Hsp92II CATG 2 cut(s) 290, 413
Kzo9I GATC 2 cut(s) 94, 324
LmnI GCTCC 1 cut(s) 598
LpnPI CCDG 6 cut(s) 96, 182, 244, 341, 469, 522
LweI GCATC 2 cut(s) 4, 585
MaeI CTAG 2 cut(s) 132, 168
MaeII ACGT 1 cut(s) 222
MaeIII GTNAC 5 cut(s) 8, 364, 391, 454, 551
MalI GATC 2 cut(s) 96, 326
MboI GATC 2 cut(s) 94, 324
MboII GAAGA 3 cut(s) 47, 227, 334
MfeI CAATTG 1 cut(s) 427
MflI RGATCY 1 cut(s) 324
MhlI GDGCHC 1 cut(s) 589
MluCI AATT 4 cut(s) 127, 179, 427, 600
MlyI GAGTC 2 cut(s) 13, 361
MseI TTAA 2 cut(s) 42, 140
MunI CAATTG 1 cut(s) 427
MvnI CGCG 1 cut(s) 99
MwoI GCNNNNNNNGC 2 cut(s) 96, 173
NcoI CCATGG 1 cut(s) 409
NdeII GATC 2 cut(s) 94, 324
NlaIII CATG 2 cut(s) 290, 413
NmuCI GTSAC 1 cut(s) 364
PagI TCATGA 1 cut(s) 286
PleI GAGTC 2 cut(s) 12, 361
PpsI GAGTC 2 cut(s) 12, 361
PspFI CCCAGC 1 cut(s) 536
PspPI GGNCC 1 cut(s) 513
PsuI RGATCY 1 cut(s) 324
RsaI GTAC 1 cut(s) 247
RsaNI GTAC 1 cut(s) 246
SaqAI TTAA 2 cut(s) 42, 140
Sau3AI GATC 2 cut(s) 94, 324
Sau96I GGNCC 1 cut(s) 513
SchI GAGTC 2 cut(s) 13, 361
SduI GDGCHC 1 cut(s) 589
SetI ASST 8 cut(s) 67, 121, 169, 225, 241, 318, 421, 629
SfaNI GCATC 2 cut(s) 4, 585
SfcI CTRYAG 1 cut(s) 317
SinI GGWCC 1 cut(s) 513
Sse9I AATT 4 cut(s) 127, 179, 427, 600
SsiI CCGC 4 cut(s) 53, 99, 208, 389
SspI AATATT 1 cut(s) 382
SspMI CTAG 2 cut(s) 132, 168
StyI CCWWGG 1 cut(s) 409
TaaI ACNGT 1 cut(s) 397
TaiI ACGT 1 cut(s) 225
TaqII GACCGA 1 cut(s) 530
TasI AATT 4 cut(s) 127, 179, 427, 600
Tru1I TTAA 2 cut(s) 42, 140
Tru9I TTAA 2 cut(s) 42, 140
TseFI GTSAC 1 cut(s) 364
Tsp45I GTSAC 1 cut(s) 364
TspDTI ATGAA 2 cut(s) 272, 315
VneI GTGCAC 1 cut(s) 585
VpaK11BI GGWCC 1 cut(s) 513
XspI CTAG 2 cut(s) 132, 168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.