Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0005596

Physical Location & Seq

Genomic Coordinates Reverse (-)

22944274 .. 22948040

Gene Structure 3767 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G233400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGAATCGTTACGATTCTAACCCTTTCGCAGATGACGAGGTCAATCCATTTGCGAATCCTGGAAGTGTCCCCCCTGCAAACTCGAGGCTTTCACCTCTTCCTCCTGAACCCTATGATCGCAATGCAACAATTGATATTCCTCTTGATAATTCAAAGAGTTTAAAAGCAAAGGAGAAGGAACTCCACGCAAAAGAGGCTGAATTGAAAAAGAAGGAACAGGAACTAAAGCGGCGGGAAGACGCCATAGCACGAGCTGGAGTTGTTATAGAGGAGAAAAACTGGCCTCCATTTTTCCCCATCATCCATCAAGACATTGCAAACGAAATACCAATCCATCTACAGAGGATCCAGTATGTTGCGTTCACAACATATCTGGGTTTGATTGTGTGTCTTCTGTGGAATATTCTGGCAGTTACCGTAGCCTGGTTCAAAGGAGAAGGTCCAATAATTTGGCTTCTGGCTGTAATCTACTTCATAGCAAGTGTTCCGCTATCCTATTTCCTCTGGTATCGCCCGCTTTATCGTGCTATGAGGACTGATAGTGCTCTGAGTTTTGCTGGGTTTTTCTTGTCTTATCTGCTCCACATTGCGTTTTGCGTCTATGCTGCAATTGCTCCTCCAATTGTCTTCAAAGGGAAATCTATCACAGGTATTTTGCCTGCAATAGAACTGCTGGGTTACAATGCTGCGGTTGGGATACTTTACTTCATTGGATTTGGGCTGTTCGTCTGTGAAACAGTTCTCAGCATCTGGGTTATTCAGCAAGTATACACGTATTTCAGAGGCAGTGGAAAGGTTGAAGAGGTGAAGCGTGAGGCAGCAAGAAGTACCATGATGGCAGCAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005886 GO:0006810 GO:0006897 GO:0006898 GO:0008150 GO:0012505 GO:0016020 GO:0016192 GO:0031410 GO:0031982 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0071944 GO:0097708 GO:0098657

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SCAMP

Protein Analysis

283

Amino Acids

31.86

Weight (kDa)

7.67

Isoelectric Point (pI)

43.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005596)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03550 AT1G03550 AT1G03550 AT1G03550 AT1G03550 AT1G03550 AT1G03550
fragaria_vesca	FvH4_6g44940 FvH4_6g44940
malus_domestica	MD09G1091600.v1.1 MD17G1081500.v1.1
prunus_persica	Prupe.3G233400_v2.0.a1 Prupe.3G233400_v2.0.a1 Prupe.3G233400_v2.0.a1 Prupe.3G233400_v2.0.a1 Prupe.3G233400_v2.0.a1 Prupe.6G353700_v2.0.a1
pyrus_communis	pycom17g07980
rosa_chinensis	RchiOBHm_Chr2g0162171
rosa_laevigata	RLG00000021325
rosa_multiflora	Rmu_co8502967.1_g000001
rosa_roxburghii	Rroxscaffold_2G00088270
rosa_rugosa	Rorug02G0494900
rosa_samantha	Rh2AG561400 Rh2BG574500 Rh2CG544700 Rh2DG584500
rosa_wichuraiana	Rw2G046490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	768
AciI	CCGC	5 cut(s)	229, 232, 488, 515, 689
AclWI	GGATC	2 cut(s)	340, 353
AcyI	GRCGYC	1 cut(s)	240
AfaI	GTAC	1 cut(s)	829
AfiI	CCNNNNNNNGG	1 cut(s)	423
AflIII	ACRYGT	1 cut(s)	771
AgsI	TTSAA	5 cut(s)	153, 205, 430, 631, 800
AjnI	CCWGG	2 cut(s)	58, 422
AluBI	AGCT	1 cut(s)	254
AluI	AGCT	1 cut(s)	254
Alw21I	GWGCWC	1 cut(s)	547
AlwI	GGATC	2 cut(s)	340, 353
AlwNI	CAGNNNCTG	1 cut(s)	750
Ama87I	CYCGRG	1 cut(s)	82
AoxI	GGCC	1 cut(s)	281
ApeKI	GCWGC	4 cut(s)	605, 686, 818, 839
Asp700I	GAANNNNTTC	1 cut(s)	738
AspS9I	GGNCC	1 cut(s)	440
AsuHPI	GGTGA	2 cut(s)	84, 817
AvaI	CYCGRG	1 cut(s)	82
AvaII	GGWCC	1 cut(s)	440
BamHI	GGATCC	1 cut(s)	345
BauI	CACGAG	1 cut(s)	249
BbsI	GAAGAC	3 cut(s)	243, 383, 619
Bbv12I	GWGCWC	1 cut(s)	547
BbvI	GCAGC	3 cut(s)	592, 673, 830
BccI	CCATC	4 cut(s)	305, 312, 342, 829
BciT130I	CCWGG	2 cut(s)	60, 424
BciVI	GTATCC	1 cut(s)	690
BfmI	CTRYAG	1 cut(s)	338
BfuI	GTATCC	1 cut(s)	690
BisI	GCNGC	5 cut(s)	230, 606, 687, 819, 840
BlsI	GCNGC	5 cut(s)	231, 607, 688, 820, 841
Bme1390I	CCNGG	2 cut(s)	60, 424
Bme18I	GGWCC	1 cut(s)	440
BmeT110I	CYCGRG	1 cut(s)	82
BmgT120I	GGNCC	1 cut(s)	440
BmiI	GGNNCC	1 cut(s)	347
BmrFI	CCNGG	2 cut(s)	60, 424
BmsI	GCATC	1 cut(s)	756
BpiI	GAAGAC	3 cut(s)	243, 383, 619
BpmI	CTGGAG	1 cut(s)	276
BsaAI	YACGTR	1 cut(s)	774
BsaHI	GRCGYC	1 cut(s)	240
Bsc4I	CCNNNNNNNGG	1 cut(s)	423
Bse1I	ACTGG	2 cut(s)	284, 349
Bse3DI	GCAATG	4 cut(s)	127, 312, 585, 849
BseBI	CCWGG	2 cut(s)	60, 424
BseGI	GGATG	1 cut(s)	300
BseLI	CCNNNNNNNGG	1 cut(s)	423
BseMI	GCAATG	4 cut(s)	127, 312, 585, 849
BseMII	CTCAG	2 cut(s)	539, 757
BseNI	ACTGG	2 cut(s)	284, 349
BseRI	GAGGAG	2 cut(s)	284, 606
BseXI	GCAGC	3 cut(s)	592, 673, 830
BseYI	CCCAGC	2 cut(s)	557, 673
BshFI	GGCC	1 cut(s)	283
BsiHKAI	GWGCWC	1 cut(s)	547
BsiHKCI	CYCGRG	1 cut(s)	82
BslFI	GGGAC	1 cut(s)	53
BslI	CCNNNNNNNGG	1 cut(s)	423
BsmFI	GGGAC	1 cut(s)	53
BsnI	GGCC	1 cut(s)	283
BsoBI	CYCGRG	1 cut(s)	82
Bsp1286I	GDGCHC	1 cut(s)	547
Bsp143I	GATC	2 cut(s)	115, 345
BspACI	CCGC	5 cut(s)	229, 232, 488, 515, 689
BspANI	GGCC	1 cut(s)	283
BspCNI	CTCAG	2 cut(s)	540, 756
BspLI	GGNNCC	1 cut(s)	347
BspPI	GGATC	2 cut(s)	340, 353
BsrDI	GCAATG	4 cut(s)	127, 312, 585, 849
BsrI	ACTGG	2 cut(s)	284, 349
BssMI	GATC	2 cut(s)	115, 345
BssNAI	GTATAC	1 cut(s)	769
BssNI	GRCGYC	1 cut(s)	240
BssSI	CACGAG	1 cut(s)	249
Bst1107I	GTATAC	1 cut(s)	769
Bst2BI	CACGAG	1 cut(s)	249
Bst2UI	CCWGG	2 cut(s)	60, 424
Bst4CI	ACNGT	2 cut(s)	418, 739
Bst6I	CTCTTC	2 cut(s)	102, 795
BstACI	GRCGYC	1 cut(s)	240
BstBAI	YACGTR	1 cut(s)	774
BstC8I	GCNNGC	2 cut(s)	515, 660
BstDEI	CTNAG	2 cut(s)	548, 743
BstF5I	GGATG	1 cut(s)	300
BstKTI	GATC	2 cut(s)	118, 348
BstMBI	GATC	2 cut(s)	115, 345
BstMWI	GCNNNNNNNGC	2 cut(s)	194, 611
BstNI	CCWGG	2 cut(s)	60, 424
BstSCI	CCNGG	2 cut(s)	58, 422
BstSFI	CTRYAG	1 cut(s)	338
BstV1I	GCAGC	3 cut(s)	592, 673, 830
BstV2I	GAAGAC	3 cut(s)	243, 383, 619
BstX2I	RGATCY	1 cut(s)	345
BstXI	CCANNNNNNTGG	1 cut(s)	450
BstYI	RGATCY	1 cut(s)	345
BstZ17I	GTATAC	1 cut(s)	769
BsuI	GTATCC	1 cut(s)	690
BsuRI	GGCC	1 cut(s)	283
BtsCI	GGATG	1 cut(s)	300
BtsI	GCAGTG	1 cut(s)	793
BtsIMutI	CAGTG	1 cut(s)	793
Cac8I	GCNNGC	2 cut(s)	515, 660
CaiI	CAGNNNCTG	1 cut(s)	750
Cfr13I	GGNCC	1 cut(s)	440
CseI	GACGC	2 cut(s)	248, 586
Csp6I	GTAC	1 cut(s)	828
CviAII	CATG	1 cut(s)	832
CviJI	RGCY	8 cut(s)	88, 197, 254, 283, 422, 454, 461, 721
CviKI_1	RGCY	8 cut(s)	88, 197, 254, 283, 422, 454, 461, 721
CviQI	GTAC	1 cut(s)	828
DdeI	CTNAG	2 cut(s)	548, 743
DpnI	GATC	2 cut(s)	117, 347
DpnII	GATC	2 cut(s)	115, 345
DraI	TTTAAA	1 cut(s)	162
Eam1104I	CTCTTC	2 cut(s)	102, 795
EarI	CTCTTC	2 cut(s)	102, 795
Eco47I	GGWCC	1 cut(s)	440
Eco88I	CYCGRG	1 cut(s)	82
EcoRII	CCWGG	2 cut(s)	58, 422
FaeI	CATG	1 cut(s)	835
FaqI	GGGAC	1 cut(s)	53
FatI	CATG	1 cut(s)	831
FauI	CCCGC	2 cut(s)	225, 522
FblI	GTMKAC	1 cut(s)	768
Fnu4HI	GCNGC	5 cut(s)	230, 606, 687, 819, 840
FokI	GGATG	1 cut(s)	287
Fsp4HI	GCNGC	5 cut(s)	230, 606, 687, 819, 840
GluI	GCNGC	5 cut(s)	230, 606, 687, 819, 840
GsaI	CCCAGC	2 cut(s)	561, 677
GsuI	CTGGAG	1 cut(s)	276
HaeIII	GGCC	1 cut(s)	283
HgaI	GACGC	2 cut(s)	248, 586
Hin1I	GRCGYC	1 cut(s)	240
Hin1II	CATG	1 cut(s)	835
HinfI	GANTC	3 cut(s)	4, 14, 55
HphI	GGTGA	2 cut(s)	84, 817
Hpy166II	GTNNAC	2 cut(s)	363, 769
Hpy188I	TCNGA	2 cut(s)	549, 782
Hpy188III	TCNNGA	3 cut(s)	104, 143, 308
Hpy8I	GTNNAC	2 cut(s)	363, 769
HpyAV	CCTTC	3 cut(s)	169, 205, 431
HpyCH4III	ACNGT	2 cut(s)	418, 739
HpyCH4IV	ACGT	1 cut(s)	773
HpyCH4V	TGCA	5 cut(s)	77, 125, 317, 608, 662
HpyF10VI	GCNNNNNNNGC	2 cut(s)	194, 611
HpyF3I	CTNAG	2 cut(s)	548, 743
HpySE526I	ACGT	1 cut(s)	773
Hsp92I	GRCGYC	1 cut(s)	240
Hsp92II	CATG	1 cut(s)	835
Kzo9I	GATC	2 cut(s)	115, 345
LmnI	GCTCC	2 cut(s)	585, 619
Lsp1109I	GCAGC	3 cut(s)	592, 673, 830
LweI	GCATC	1 cut(s)	756
MaeII	ACGT	1 cut(s)	773
MaeIII	GTNAC	3 cut(s)	8, 412, 677
MalI	GATC	2 cut(s)	117, 347
MboI	GATC	2 cut(s)	115, 345
MboII	GAAGA	5 cut(s)	89, 248, 383, 619, 812
MfeI	CAATTG	3 cut(s)	129, 609, 621
MflI	RGATCY	1 cut(s)	345
MhlI	GDGCHC	1 cut(s)	547
MluCI	AATT	6 cut(s)	129, 148, 200, 447, 609, 621
MroXI	GAANNNNTTC	1 cut(s)	738
MseI	TTAA	1 cut(s)	161
MspR9I	CCNGG	2 cut(s)	60, 424
MunI	CAATTG	3 cut(s)	129, 609, 621
MvaI	CCWGG	2 cut(s)	60, 424
MwoI	GCNNNNNNNGC	2 cut(s)	194, 611
NdeII	GATC	2 cut(s)	115, 345
NlaIII	CATG	1 cut(s)	835
NlaIV	GGNNCC	1 cut(s)	347
PaeR7I	CTCGAG	1 cut(s)	82
PcsI	WCGNNNNNNNCGW	1 cut(s)	33
PdmI	GAANNNNTTC	1 cut(s)	738
PfeI	GAWTC	3 cut(s)	4, 14, 55
PflFI	GACNNNGTC	1 cut(s)	38
PfoI	TCCNGGA	1 cut(s)	58
PkrI	GCNGC	5 cut(s)	231, 607, 688, 820, 841
Ppu21I	YACGTR	1 cut(s)	774
Psp6I	CCWGG	2 cut(s)	58, 422
PspFI	CCCAGC	2 cut(s)	557, 673
PspGI	CCWGG	2 cut(s)	58, 422
PspN4I	GGNNCC	1 cut(s)	347
PspPI	GGNCC	1 cut(s)	440
PspXI	VCTCGAGB	1 cut(s)	82
PsrI	GAACNNNNNNTAC	2 cut(s)	344, 376
PstNI	CAGNNNCTG	1 cut(s)	750
PsuI	RGATCY	1 cut(s)	345
PsyI	GACNNNGTC	1 cut(s)	38
RsaI	GTAC	1 cut(s)	829
RsaNI	GTAC	1 cut(s)	828
SaqAI	TTAA	1 cut(s)	161
SatI	GCNGC	5 cut(s)	230, 606, 687, 819, 840
Sau3AI	GATC	2 cut(s)	115, 345
Sau96I	GGNCC	1 cut(s)	440
ScrFI	CCNGG	2 cut(s)	60, 424
SduI	GDGCHC	1 cut(s)	547
SetI	ASST	8 cut(s)	42, 97, 256, 442, 652, 776, 798, 807
SfaNI	GCATC	1 cut(s)	756
SfcI	CTRYAG	1 cut(s)	338
Sfr274I	CTCGAG	1 cut(s)	82
SinI	GGWCC	1 cut(s)	440
SlaI	CTCGAG	1 cut(s)	82
SmlI	CTYRAG	1 cut(s)	82
SmoI	CTYRAG	1 cut(s)	82
Sse9I	AATT	6 cut(s)	129, 148, 200, 447, 609, 621
SsiI	CCGC	5 cut(s)	229, 232, 488, 515, 689
SspI	AATATT	1 cut(s)	403
StyD4I	CCNGG	2 cut(s)	58, 422
TaaI	ACNGT	2 cut(s)	418, 739
TaiI	ACGT	1 cut(s)	776
TaqI	TCGA	1 cut(s)	83
TasI	AATT	6 cut(s)	129, 148, 200, 447, 609, 621
TauI	GCSGC	1 cut(s)	232
TfiI	GAWTC	3 cut(s)	4, 14, 55
Tru1I	TTAA	1 cut(s)	161
Tru9I	TTAA	1 cut(s)	161
TscAI	CASTG	1 cut(s)	793
TseI	GCWGC	4 cut(s)	605, 686, 818, 839
TspDTI	ATGAA	3 cut(s)	17, 463, 697
TspRI	CASTG	1 cut(s)	793
Tth111I	GACNNNGTC	1 cut(s)	38
VpaK11BI	GGWCC	1 cut(s)	440
XhoI	CTCGAG	1 cut(s)	82
XmiI	GTMKAC	1 cut(s)	768
XmnI	GAANNNNTTC	1 cut(s)	738

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.