Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0005596

Physical Location & Seq

Genomic Coordinates Forward (+)

6713603 .. 6717105

Gene Structure 3503 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1091600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGAATCGATACGATCCGAACCCTTTCGCCGACGAGGAGGTCAATCCCTTTGCGAATCCTGGAGGTGGAGGTGTTTCCCCTGCAAACCCAAGGCTTTCGCCCCTTCCTCCGGAACCCTATGATCGCAATGCAACAATCGATATTCCTCTTGATAATTCAAAGGGTTTACAAGCAAAGGAGAAGGAACTCAAAGCTAAAGAGGCTGAATTGAAAAAGAGGGAACAGGAACTAAAGCGGAAAGAAGATGCCATGCAACGAGCTGGAGTTGTTATAGAGGAGAAGAACTGGCCTCCATTTTTCCCCATCATCCATCATGACATTGCAAACGAAATCCCAATCCATCTACAGAGGATCCAGTATGTTGCGTTCACAACATATTTGGGTTTGATTGTGTGTCTTCTGTGGAATATTCTGGCAGTTACCGTAGCCTGGATCAAGGGAGAAGGTGTAATAATTTGGCTTCTGGCTATAATCTACTTCCTAGCAAGTGTTCCTGTAGCCTATTTCGTCTGGTATCGCCCTCTTTATCGTGCTATGAGGACTGATAGTGCTCTGAGTTTTGTTGGGTTTTTCTTGTCTTATCTGCTCCATATTTTGTTTTGCATTTACGCTGCAATTGCTCCTCCAATCTTCTTAAATGGGAAATCTATCACGGGTATTTTGCCTGCCGTAGAACTGCTGAGTTACAATGTTTCGGTTGGGATACTTTACTTGATTGGTTTTGGGTTGTACGTCTGCGAAACCCTTCTCAGCATCTGGGTTATTCAGCAAGTATACACGTATTTCCGAGGCAGCGGAAAGGCAGAACAGGTGAAGCGGGAGGCTGCACGAAGCACCATGATGGCGGCAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005886 GO:0006810 GO:0006897 GO:0006898 GO:0008150 GO:0012505 GO:0016020 GO:0016192 GO:0031410 GO:0031982 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0071944 GO:0097708 GO:0098657

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SCAMP

Protein Analysis

285

Amino Acids

32.06

Weight (kDa)

7.67

Isoelectric Point (pI)

42.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SCAMP	PF04144	93 - 264	2e-54	SCAMP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005596)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03550 AT1G03550 AT1G03550 AT1G03550 AT1G03550 AT1G03550 AT1G03550
fragaria_vesca	FvH4_6g44940 FvH4_6g44940
malus_domestica	MD09G1091600.v1.1 MD17G1081500.v1.1
prunus_persica	Prupe.3G233400_v2.0.a1 Prupe.3G233400_v2.0.a1 Prupe.3G233400_v2.0.a1 Prupe.3G233400_v2.0.a1 Prupe.3G233400_v2.0.a1 Prupe.6G353700_v2.0.a1
pyrus_communis	pycom17g07980
rosa_chinensis	RchiOBHm_Chr2g0162171
rosa_laevigata	RLG00000021325
rosa_multiflora	Rmu_co8502967.1_g000001
rosa_roxburghii	Rroxscaffold_2G00088270
rosa_rugosa	Rorug02G0494900
rosa_samantha	Rh2AG561400 Rh2BG574500 Rh2CG544700 Rh2DG584500
rosa_wichuraiana	Rw2G046490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	38
AccI	GTMKAC	1 cut(s)	774
AccIII	TCCGGA	1 cut(s)	109
AciI	CCGC	4 cut(s)	235, 795, 817, 845
AclWI	GGATC	4 cut(s)	8, 346, 359, 440
AfaI	GTAC	1 cut(s)	731
AfiI	CCNNNNNNNGG	3 cut(s)	65, 109, 429
AflIII	ACRYGT	1 cut(s)	777
AgsI	TTSAA	2 cut(s)	159, 211
AjnI	CCWGG	2 cut(s)	58, 428
AluBI	AGCT	2 cut(s)	194, 260
AluI	AGCT	2 cut(s)	194, 260
Alw21I	GWGCWC	1 cut(s)	553
AlwI	GGATC	4 cut(s)	8, 346, 359, 440
AlwNI	CAGNNNCTG	1 cut(s)	756
Aor13HI	TCCGGA	1 cut(s)	109
AoxI	GGCC	1 cut(s)	287
ApeKI	GCWGC	3 cut(s)	611, 792, 824
Asp700I	GAANNNNTTC	2 cut(s)	23, 744
AsuHPI	GGTGA	1 cut(s)	823
BamHI	GGATCC	1 cut(s)	351
BbsI	GAAGAC	1 cut(s)	389
Bbv12I	GWGCWC	1 cut(s)	553
BbvI	GCAGC	3 cut(s)	598, 804, 811
BccI	CCATC	4 cut(s)	311, 318, 348, 835
BceAI	ACGGC	1 cut(s)	653
BciT130I	CCWGG	2 cut(s)	60, 430
BciVI	GTATCC	1 cut(s)	696
BfaI	CTAG	1 cut(s)	482
BfmI	CTRYAG	2 cut(s)	344, 495
BfuI	GTATCC	1 cut(s)	696
BisI	GCNGC	4 cut(s)	612, 793, 825, 846
BlsI	GCNGC	4 cut(s)	613, 794, 826, 847
Bme1390I	CCNGG	2 cut(s)	60, 430
BmiI	GGNNCC	2 cut(s)	114, 353
BmrFI	CCNGG	2 cut(s)	60, 430
BmsI	GCATC	2 cut(s)	235, 762
BpiI	GAAGAC	1 cut(s)	389
BpmI	CTGGAG	2 cut(s)	81, 282
Bsa29I	ATCGAT	2 cut(s)	7, 138
BsaAI	YACGTR	1 cut(s)	780
BsaJI	CCNNGG	2 cut(s)	89, 787
BsaWI	WCCGGW	1 cut(s)	109
BsaXI	ACNNNNNCTCC	2 cut(s)	432, 462
Bsc4I	CCNNNNNNNGG	3 cut(s)	65, 109, 429
Bse1I	ACTGG	2 cut(s)	290, 355
Bse3DI	GCAATG	3 cut(s)	133, 318, 855
BseAI	TCCGGA	1 cut(s)	109
BseBI	CCWGG	2 cut(s)	60, 430
BseCI	ATCGAT	2 cut(s)	7, 138
BseDI	CCNNGG	2 cut(s)	89, 787
BseGI	GGATG	1 cut(s)	306
BseLI	CCNNNNNNNGG	3 cut(s)	65, 109, 429
BseMI	GCAATG	3 cut(s)	133, 318, 855
BseMII	CTCAG	3 cut(s)	545, 671, 763
BseNI	ACTGG	2 cut(s)	290, 355
BseRI	GAGGAG	3 cut(s)	50, 290, 612
BseXI	GCAGC	3 cut(s)	598, 804, 811
BsgI	GTGCAG	1 cut(s)	810
BshFI	GGCC	1 cut(s)	289
BshVI	ATCGAT	2 cut(s)	7, 138
BsiHKAI	GWGCWC	1 cut(s)	553
BsiSI	CCGG	1 cut(s)	110
BslI	CCNNNNNNNGG	3 cut(s)	65, 109, 429
BsnI	GGCC	1 cut(s)	289
Bsp1286I	GDGCHC	1 cut(s)	553
Bsp13I	TCCGGA	1 cut(s)	109
Bsp143I	GATC	4 cut(s)	13, 121, 351, 432
BspACI	CCGC	4 cut(s)	235, 795, 817, 845
BspANI	GGCC	1 cut(s)	289
BspCNI	CTCAG	3 cut(s)	546, 672, 762
BspDI	ATCGAT	2 cut(s)	7, 138
BspEI	TCCGGA	1 cut(s)	109
BspHI	TCATGA	1 cut(s)	313
BspLI	GGNNCC	2 cut(s)	114, 353
BspPI	GGATC	4 cut(s)	8, 346, 359, 440
BsrDI	GCAATG	3 cut(s)	133, 318, 855
BsrI	ACTGG	2 cut(s)	290, 355
BssECI	CCNNGG	2 cut(s)	89, 787
BssMI	GATC	4 cut(s)	13, 121, 351, 432
BssNAI	GTATAC	1 cut(s)	775
BssT1I	CCWWGG	1 cut(s)	89
Bst1107I	GTATAC	1 cut(s)	775
Bst2UI	CCWGG	2 cut(s)	60, 430
Bst4CI	ACNGT	1 cut(s)	424
BstBAI	YACGTR	1 cut(s)	780
BstC8I	GCNNGC	1 cut(s)	666
BstDEI	CTNAG	3 cut(s)	554, 680, 749
BstF5I	GGATG	1 cut(s)	306
BstKTI	GATC	4 cut(s)	16, 124, 354, 435
BstMBI	GATC	4 cut(s)	13, 121, 351, 432
BstMWI	GCNNNNNNNGC	2 cut(s)	200, 617
BstNI	CCWGG	2 cut(s)	60, 430
BstSCI	CCNGG	2 cut(s)	58, 428
BstSFI	CTRYAG	2 cut(s)	344, 495
BstV1I	GCAGC	3 cut(s)	598, 804, 811
BstV2I	GAAGAC	1 cut(s)	389
BstX2I	RGATCY	1 cut(s)	351
BstYI	RGATCY	1 cut(s)	351
BstZ17I	GTATAC	1 cut(s)	775
Bsu15I	ATCGAT	2 cut(s)	7, 138
BsuI	GTATCC	1 cut(s)	696
BsuRI	GGCC	1 cut(s)	289
BsuTUI	ATCGAT	2 cut(s)	7, 138
BtsCI	GGATG	1 cut(s)	306
Cac8I	GCNNGC	1 cut(s)	666
CaiI	CAGNNNCTG	1 cut(s)	756
CciI	TCATGA	1 cut(s)	313
ClaI	ATCGAT	2 cut(s)	7, 138
Csp6I	GTAC	1 cut(s)	730
CviAII	CATG	3 cut(s)	250, 314, 838
CviQI	GTAC	1 cut(s)	730
DdeI	CTNAG	3 cut(s)	554, 680, 749
DpnI	GATC	4 cut(s)	15, 123, 353, 434
DpnII	GATC	4 cut(s)	13, 121, 351, 432
DrdI	GACNNNNNNGTC	1 cut(s)	38
DseDI	GACNNNNNNGTC	1 cut(s)	38
Eco130I	CCWWGG	1 cut(s)	89
EcoRII	CCWGG	2 cut(s)	58, 428
EcoT14I	CCWWGG	1 cut(s)	89
ErhI	CCWWGG	1 cut(s)	89
FaeI	CATG	3 cut(s)	253, 317, 841
FatI	CATG	3 cut(s)	249, 313, 837
FauI	CCCGC	1 cut(s)	810
FblI	GTMKAC	1 cut(s)	774
Fnu4HI	GCNGC	4 cut(s)	612, 793, 825, 846
FokI	GGATG	1 cut(s)	293
Fsp4HI	GCNGC	4 cut(s)	612, 793, 825, 846
FspBI	CTAG	1 cut(s)	482
GluI	GCNGC	4 cut(s)	612, 793, 825, 846
GsuI	CTGGAG	2 cut(s)	81, 282
HaeIII	GGCC	1 cut(s)	289
HapII	CCGG	1 cut(s)	110
Hin1II	CATG	3 cut(s)	253, 317, 841
HinfI	GANTC	2 cut(s)	4, 55
HpaII	CCGG	1 cut(s)	110
HphI	GGTGA	1 cut(s)	823
Hpy166II	GTNNAC	3 cut(s)	167, 369, 775
Hpy188I	TCNGA	3 cut(s)	18, 555, 788
Hpy188III	TCNNGA	3 cut(s)	110, 149, 314
Hpy8I	GTNNAC	3 cut(s)	167, 369, 775
Hpy99I	CGWCG	1 cut(s)	35
HpyAV	CCTTC	4 cut(s)	113, 175, 437, 755
HpyCH4III	ACNGT	1 cut(s)	424
HpyCH4IV	ACGT	2 cut(s)	732, 779
HpyCH4V	TGCA	7 cut(s)	83, 131, 253, 323, 603, 614, 827
HpyF10VI	GCNNNNNNNGC	2 cut(s)	200, 617
HpyF3I	CTNAG	3 cut(s)	554, 680, 749
HpySE526I	ACGT	2 cut(s)	732, 779
Hsp92II	CATG	3 cut(s)	253, 317, 841
Kpn2I	TCCGGA	1 cut(s)	109
Kzo9I	GATC	4 cut(s)	13, 121, 351, 432
LmnI	GCTCC	2 cut(s)	591, 625
Lsp1109I	GCAGC	3 cut(s)	598, 804, 811
LweI	GCATC	2 cut(s)	235, 762
MaeI	CTAG	1 cut(s)	482
MaeII	ACGT	2 cut(s)	732, 779
MaeIII	GTNAC	2 cut(s)	418, 683
MalI	GATC	4 cut(s)	15, 123, 353, 434
MboI	GATC	4 cut(s)	13, 121, 351, 432
MboII	GAAGA	4 cut(s)	254, 292, 389, 622
MfeI	CAATTG	1 cut(s)	615
MflI	RGATCY	1 cut(s)	351
MhlI	GDGCHC	1 cut(s)	553
MluCI	AATT	4 cut(s)	154, 206, 453, 615
MroI	TCCGGA	1 cut(s)	109
MroXI	GAANNNNTTC	2 cut(s)	23, 744
MseI	TTAA	1 cut(s)	635
MslI	CAYNNNNRTG	1 cut(s)	839
MspA1I	CMGCKG	1 cut(s)	795
MspI	CCGG	1 cut(s)	110
MspR9I	CCNGG	2 cut(s)	60, 430
MunI	CAATTG	1 cut(s)	615
MvaI	CCWGG	2 cut(s)	60, 430
MwoI	GCNNNNNNNGC	2 cut(s)	200, 617
NdeII	GATC	4 cut(s)	13, 121, 351, 432
NlaIII	CATG	3 cut(s)	253, 317, 841
NlaIV	GGNNCC	2 cut(s)	114, 353
PagI	TCATGA	1 cut(s)	313
PdmI	GAANNNNTTC	2 cut(s)	23, 744
PfeI	GAWTC	2 cut(s)	4, 55
PfoI	TCCNGGA	1 cut(s)	58
PkrI	GCNGC	4 cut(s)	613, 794, 826, 847
Ppu21I	YACGTR	1 cut(s)	780
Psp6I	CCWGG	2 cut(s)	58, 428
PspGI	CCWGG	2 cut(s)	58, 428
PspN4I	GGNNCC	2 cut(s)	114, 353
PsrI	GAACNNNNNNTAC	2 cut(s)	350, 382
PstNI	CAGNNNCTG	1 cut(s)	756
PsuI	RGATCY	1 cut(s)	351
RsaI	GTAC	1 cut(s)	731
RsaNI	GTAC	1 cut(s)	730
RseI	CAYNNNNRTG	1 cut(s)	839
SaqAI	TTAA	1 cut(s)	635
SatI	GCNGC	4 cut(s)	612, 793, 825, 846
Sau3AI	GATC	4 cut(s)	13, 121, 351, 432
ScrFI	CCNGG	2 cut(s)	60, 430
SduI	GDGCHC	1 cut(s)	553
SetI	ASST	9 cut(s)	42, 67, 73, 196, 262, 448, 735, 782, 813
SfaNI	GCATC	2 cut(s)	235, 762
SfcI	CTRYAG	2 cut(s)	344, 495
SmiMI	CAYNNNNRTG	1 cut(s)	839
Sse9I	AATT	4 cut(s)	154, 206, 453, 615
SsiI	CCGC	4 cut(s)	235, 795, 817, 845
SspI	AATATT	1 cut(s)	409
SspMI	CTAG	1 cut(s)	482
StyD4I	CCNGG	2 cut(s)	58, 428
StyI	CCWWGG	1 cut(s)	89
TaaI	ACNGT	1 cut(s)	424
TaiI	ACGT	2 cut(s)	735, 782
TaqI	TCGA	2 cut(s)	7, 138
TasI	AATT	4 cut(s)	154, 206, 453, 615
TauI	GCSGC	1 cut(s)	848
TfiI	GAWTC	2 cut(s)	4, 55
Tru1I	TTAA	1 cut(s)	635
Tru9I	TTAA	1 cut(s)	635
TseI	GCWGC	3 cut(s)	611, 792, 824
TspDTI	ATGAA	1 cut(s)	17
XmiI	GTMKAC	1 cut(s)	774
XmnI	GAANNNNTTC	2 cut(s)	23, 744
XspI	CTAG	1 cut(s)	482

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.