Rorug02G0494900

secretory carrier-associated membrane protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0005596
Physical Location & Seq
Forward (+)
62391780 .. 62394115
2336 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0494900.1

Sequence Viewer

Length: 1458 bp
ATGGATTCCAAGGGATTTGTAGCTGGTAAGCCTCATGCTGTTTGTGTTCCAGCTCCAGCACAAGGCCACATAAAGGCAATGTTCAAACTAGCAAAGCTCCTCCACCATAGGGGTTTCCACATAACCTTTGTCAACACAGAGTTCAACCACAAAAGGTTTCTTAGATCTCTAGGACCCAACTCCCTCGACGGCTTGCCCCATTTTCGCTTTGAGGCCATCCCCGATGGCATTCCTGCAGGTTCGGATGAAGATGCCACCCAAGACGTCACTTTGGTTTGTGATGCCATAATGAAAGATCTATTACTGGCTCCTTTTCGAGATCTCCTCTTGAAGCTCAACGACGAAGACGGTAGTACTCCGGTGACTTGCGTCGTTTCAGATGGTTTCATGCCGTTCGCCATCACAGCTGCTGAAGAGCTTGGAGTGCCTAGAGTAGCCTTCTTCACTATTGCTGCTTGCAGCTTTATGGCATATAAACAATATCCCACTTTGGTGGAAAAAGAACTTGCACCACTCAAAGATGAGAGCTGTTTCACAAATGGGTTTTTGGACAAGGTATTAGATTGGATTCCAGGAATCAAAGATATCCGTTTACGAGATTTACCCGCCAACTTTCGAACTACGAACCCCGATGACATCCTCTTTAACTTCGTCATGGAATCAATGCATAGAGCTGATAAGGCTACGGCAATAATTCTTCACACTTTTGATGCTTTGGAGCCTCATGTTCTGGACGCGCTCTCATCTATGCTTAAGCTCCCACCTGTTTATGCAATTGGGCCTCAACAATTACACCTCAATCAATTACCAGAAGACACTTTAAAGGATGTGGGAGATAGTCTATGGAAAGAAGAAACTGGGTGTCTAGATTGGCTCGATTCTAAGGAACAGAACTCAGTGATTTATGTCAGTTTTGGAAGTATAGCGGTAATGTCTCCACAACATCTTGTAGAGTTTGGTTGGGGACTTGCAAATAGTAAAGTTCCCTTCTTATGGGTAATTAGGCCCGATTTGGTTGTTGGTGAGTCCGCGATTTTACCACCTGCGTTTGTAGCTGAAACCAAGGAAAGAGGTCTAATCGTAAGTTGGTGTCCGCAAGAGCAAGTGCTTAACCACCCATCAGTTGGAGGGTTTTTGACACACAGCGGTTGGGGTTCGACTATTGAGAGTTTGTGTGCAGGTGTGCCTATGCTATGTTGGCCATTCTTTGCTGACCAGCTAACAAATTGTTGGTCTGCTTGTAATGAATGGGGCATTGGCATGGAGATTAGTAATGATGTAAAGAGAGGTGAAGTTGAGAAGCTTGTTAGAGAGTTAATGGGGGGAGAGAAGGGTGAGAAAATGAAAAAAAAGGTCTTGGAATGGAAGAAACTTGCTGAACAAGCTACTGCTCCACATGGTTCATCATCCATAAACTTTGACAATTTAGTGCACCAAATGTTGTCAACGAAAAAGTAG

Protein Analysis

485

Amino Acids

53.75

Weight (kDa)

5.47

Isoelectric Point (pI)

39.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 289 - 443 2.2e-25 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 1051, 1169
AatII GACGTC 1 cut(s) 267
Acc36I ACCTGC 3 cut(s) 227, 1051, 1169
AccB7I CCANNNNNTGG 1 cut(s) 1124
AccII CGCG 2 cut(s) 737, 1031
AciI CCGC 5 cut(s) 606, 926, 1029, 1094, 1146
AcoI YGGCCR 1 cut(s) 1199
AcuI CTGAAG 1 cut(s) 432
AcyI GRCGYC 1 cut(s) 264
AfaI GTAC 1 cut(s) 355
AfiI CCNNNNNNNGG 5 cut(s) 62, 73, 109, 993, 1124
AflII CTTAAG 1 cut(s) 752
AgsI TTSAA 3 cut(s) 85, 145, 331
AjnI CCWGG 1 cut(s) 571
AjuI GAANNNNNNNTTGG 2 cut(s) 1239, 1271
AleI CACNNNNGTG 1 cut(s) 491
Alw21I GWGCWC 1 cut(s) 1434
Alw26I GTCTC 1 cut(s) 939
Alw44I GTGCAC 1 cut(s) 1430
AlwNI CAGNNNCTG 1 cut(s) 410
AoxI GGCC 5 cut(s) 64, 213, 779, 1004, 1199
ApaLI GTGCAC 1 cut(s) 1430
ApeKI GCWGC 3 cut(s) 407, 452, 459
ArsI GACNNNNNNTTYG 2 cut(s) 1217, 1249
AspLEI GCGC 1 cut(s) 739
AspS9I GGNCC 3 cut(s) 173, 779, 1005
AsuHPI GGTGA 4 cut(s) 373, 1034, 1301, 1346
AsuII TTCGAA 1 cut(s) 616
AvaII GGWCC 1 cut(s) 173
BaeGI GKGCMC 1 cut(s) 1434
BalI TGGCCA 1 cut(s) 1201
BbsI GAAGAC 2 cut(s) 351, 819
Bbv12I GWGCWC 1 cut(s) 1434
BbvI GCAGC 3 cut(s) 394, 439, 471
BccI CCATC 5 cut(s) 218, 224, 374, 407, 1126
BceAI ACGGC 3 cut(s) 205, 376, 702
BciT130I CCWGG 1 cut(s) 573
BcoDI GTCTC 1 cut(s) 939
BfaI CTAG 4 cut(s) 89, 170, 429, 866
BfmI CTRYAG 1 cut(s) 234
BfrI CTTAAG 1 cut(s) 752
BfuAI ACCTGC 3 cut(s) 227, 1051, 1169
BglII AGATCT 3 cut(s) 164, 295, 319
BisI GCNGC 3 cut(s) 408, 453, 460
BlsI GCNGC 3 cut(s) 409, 454, 461
BmcAI AGTACT 1 cut(s) 355
Bme1390I CCNGG 1 cut(s) 573
Bme18I GGWCC 1 cut(s) 173
BmgT120I GGNCC 3 cut(s) 173, 779, 1005
BmiI GGNNCC 3 cut(s) 175, 309, 720
BmrFI CCNGG 1 cut(s) 573
BmrI ACTGGG 1 cut(s) 867
BmsI GCATC 3 cut(s) 241, 271, 700
BmuI ACTGGG 1 cut(s) 867
BoxI GACNNNNGTC 1 cut(s) 368
BpiI GAAGAC 2 cut(s) 351, 819
BplI GAGNNNNNCTC 2 cut(s) 309, 341
BpmI CTGGAG 1 cut(s) 39
Bpu14I TTCGAA 1 cut(s) 616
BsaHI GRCGYC 1 cut(s) 264
BsaJI CCNNGG 2 cut(s) 9, 1062
BsaWI WCCGGW 1 cut(s) 358
Bsc4I CCNNNNNNNGG 5 cut(s) 62, 73, 109, 993, 1124
Bse1I ACTGG 2 cut(s) 309, 862
Bse3DI GCAATG 1 cut(s) 84
BseBI CCWGG 1 cut(s) 573
BseDI CCNNGG 2 cut(s) 9, 1062
BseGI GGATG 5 cut(s) 216, 250, 636, 832, 1406
BseLI CCNNNNNNNGG 5 cut(s) 62, 73, 109, 993, 1124
BseMI GCAATG 1 cut(s) 84
BseMII CTCAG 1 cut(s) 909
BseNI ACTGG 2 cut(s) 309, 862
BseRI GAGGAG 2 cut(s) 89, 314
BseSI GKGCMC 1 cut(s) 1434
BseXI GCAGC 3 cut(s) 394, 439, 471
BsgI GTGCAG 1 cut(s) 1197
Bsh1236I CGCG 2 cut(s) 737, 1031
BshFI GGCC 5 cut(s) 66, 215, 781, 1006, 1201
BsiHKAI GWGCWC 1 cut(s) 1434
BsiSI CCGG 1 cut(s) 359
BslFI GGGAC 1 cut(s) 978
BslI CCNNNNNNNGG 5 cut(s) 62, 73, 109, 993, 1124
BsmAI GTCTC 1 cut(s) 939
BsmFI GGGAC 1 cut(s) 978
BsmI GAATGC 1 cut(s) 228
BsnI GGCC 5 cut(s) 66, 215, 781, 1006, 1201
Bsp119I TTCGAA 1 cut(s) 616
Bsp1286I GDGCHC 1 cut(s) 1434
Bsp143I GATC 3 cut(s) 164, 295, 319
BspACI CCGC 5 cut(s) 606, 926, 1029, 1094, 1146
BspANI GGCC 5 cut(s) 66, 215, 781, 1006, 1201
BspCNI CTCAG 1 cut(s) 908
BspFNI CGCG 2 cut(s) 737, 1031
BspLI GGNNCC 3 cut(s) 175, 309, 720
BspMAI CTGCAG 1 cut(s) 238
BspMI ACCTGC 3 cut(s) 227, 1051, 1169
BspQI GCTCTTC 1 cut(s) 408
BspT104I TTCGAA 1 cut(s) 616
BspTI CTTAAG 1 cut(s) 752
BsrDI GCAATG 1 cut(s) 84
BsrI ACTGG 2 cut(s) 309, 862
BssECI CCNNGG 2 cut(s) 9, 1062
BssMI GATC 3 cut(s) 164, 295, 319
BssNI GRCGYC 1 cut(s) 264
BssT1I CCWWGG 2 cut(s) 9, 1062
Bst2UI CCWGG 1 cut(s) 573
Bst4CI ACNGT 1 cut(s) 350
Bst6I CTCTTC 1 cut(s) 408
BstACI GRCGYC 1 cut(s) 264
BstAFI CTTAAG 1 cut(s) 752
BstBI TTCGAA 1 cut(s) 616
BstC8I GCNNGC 2 cut(s) 194, 457
BstDEI CTNAG 3 cut(s) 161, 882, 895
BstF5I GGATG 5 cut(s) 216, 250, 636, 832, 1406
BstFNI CGCG 2 cut(s) 737, 1031
BstHHI GCGC 1 cut(s) 739
BstKTI GATC 3 cut(s) 167, 298, 322
BstMAI GTCTC 1 cut(s) 939
BstMBI GATC 3 cut(s) 164, 295, 319
BstMWI GCNNNNNNNGC 6 cut(s) 404, 424, 680, 1052, 1198, 1382
BstNI CCWGG 1 cut(s) 573
BstPAI GACNNNNGTC 1 cut(s) 368
BstSCI CCNGG 1 cut(s) 571
BstSFI CTRYAG 1 cut(s) 234
BstSLI GKGCMC 1 cut(s) 1434
BstUI CGCG 2 cut(s) 737, 1031
BstV1I GCAGC 3 cut(s) 394, 439, 471
BstV2I GAAGAC 2 cut(s) 351, 819
BstX2I RGATCY 3 cut(s) 164, 295, 319
BstXI CCANNNNNNTGG 1 cut(s) 493
BstYI RGATCY 3 cut(s) 164, 295, 319
BsuRI GGCC 5 cut(s) 66, 215, 781, 1006, 1201
BtsCI GGATG 5 cut(s) 216, 250, 636, 832, 1406
BtsIMutI CAGTG 1 cut(s) 903
BveI ACCTGC 3 cut(s) 227, 1051, 1169
Cac8I GCNNGC 2 cut(s) 194, 457
CaiI CAGNNNCTG 1 cut(s) 410
CfoI GCGC 1 cut(s) 739
Cfr13I GGNCC 3 cut(s) 173, 779, 1005
CseI GACGC 2 cut(s) 358, 743
Csp6I GTAC 1 cut(s) 354
CviAII CATG 6 cut(s) 35, 388, 655, 725, 1261, 1397
CviQI GTAC 1 cut(s) 354
DdeI CTNAG 3 cut(s) 161, 882, 895
DpnI GATC 3 cut(s) 166, 297, 321
DpnII GATC 3 cut(s) 164, 295, 319
DraI TTTAAA 1 cut(s) 822
EaeI YGGCCR 1 cut(s) 1199
Eam1104I CTCTTC 1 cut(s) 408
EarI CTCTTC 1 cut(s) 408
Eco130I CCWWGG 2 cut(s) 9, 1062
Eco32I GATATC 1 cut(s) 586
Eco47I GGWCC 1 cut(s) 173
Eco57I CTGAAG 1 cut(s) 432
EcoO109I RGGNCCY 1 cut(s) 173
EcoRII CCWGG 1 cut(s) 571
EcoRV GATATC 1 cut(s) 586
EcoT14I CCWWGG 2 cut(s) 9, 1062
EcoT22I ATGCAT 1 cut(s) 669
ErhI CCWWGG 2 cut(s) 9, 1062
FaeI CATG 6 cut(s) 38, 391, 658, 728, 1264, 1400
FaqI GGGAC 1 cut(s) 978
FatI CATG 6 cut(s) 34, 387, 654, 724, 1260, 1396
FauI CCCGC 1 cut(s) 613
Fnu4HI GCNGC 3 cut(s) 408, 453, 460
FokI GGATG 5 cut(s) 203, 257, 623, 839, 1393
Fsp4HI GCNGC 3 cut(s) 408, 453, 460
FspBI CTAG 4 cut(s) 89, 170, 429, 866
GlaI GCGC 1 cut(s) 738
GluI GCNGC 3 cut(s) 408, 453, 460
GsuI CTGGAG 1 cut(s) 39
HaeIII GGCC 5 cut(s) 66, 215, 781, 1006, 1201
HapII CCGG 1 cut(s) 359
HgaI GACGC 2 cut(s) 358, 743
HhaI GCGC 1 cut(s) 739
Hin1I GRCGYC 1 cut(s) 264
Hin1II CATG 6 cut(s) 38, 391, 658, 728, 1264, 1400
Hin6I GCGC 1 cut(s) 737
HinP1I GCGC 1 cut(s) 737
HincII GTYRAC 2 cut(s) 133, 1446
HindII GTYRAC 2 cut(s) 133, 1446
HindIII AAGCTT 1 cut(s) 1301
HinfI GANTC 6 cut(s) 5, 568, 576, 659, 878, 1025
HpaII CCGG 1 cut(s) 359
HphI GGTGA 4 cut(s) 373, 1034, 1301, 1346
Hpy166II GTNNAC 4 cut(s) 133, 593, 1432, 1446
Hpy188I TCNGA 2 cut(s) 244, 379
Hpy188III TCNNGA 4 cut(s) 317, 328, 731, 866
Hpy8I GTNNAC 4 cut(s) 133, 593, 1432, 1446
Hpy99I CGWCG 3 cut(s) 191, 344, 374
HpyAV CCTTC 3 cut(s) 448, 997, 1324
HpyCH4III ACNGT 1 cut(s) 350
HpyCH4IV ACGT 1 cut(s) 264
HpyCH4V TGCA 8 cut(s) 236, 459, 509, 667, 773, 971, 1178, 1432
HpyF10VI GCNNNNNNNGC 6 cut(s) 404, 424, 680, 1052, 1198, 1382
HpyF3I CTNAG 3 cut(s) 161, 882, 895
HpySE526I ACGT 1 cut(s) 264
Hsp92I GRCGYC 1 cut(s) 264
Hsp92II CATG 6 cut(s) 38, 391, 658, 728, 1264, 1400
HspAI GCGC 1 cut(s) 737
Kzo9I GATC 3 cut(s) 164, 295, 319
LguI GCTCTTC 1 cut(s) 408
LmnI GCTCC 6 cut(s) 58, 102, 313, 718, 762, 1396
Lsp1109I GCAGC 3 cut(s) 394, 439, 471
LweI GCATC 3 cut(s) 241, 271, 700
MaeI CTAG 4 cut(s) 89, 170, 429, 866
MaeII ACGT 1 cut(s) 264
MaeIII GTNAC 2 cut(s) 265, 361
MalI GATC 3 cut(s) 166, 297, 321
MboI GATC 3 cut(s) 164, 295, 319
MboII GAAGA 8 cut(s) 260, 356, 425, 433, 689, 824, 863, 1378
MfeI CAATTG 1 cut(s) 774
MflI RGATCY 3 cut(s) 164, 295, 319
MhlI GDGCHC 1 cut(s) 1434
MlsI TGGCCA 1 cut(s) 1201
MluCI AATT 7 cut(s) 693, 774, 788, 803, 999, 1225, 1423
MluNI TGGCCA 1 cut(s) 1201
MlyI GAGTC 1 cut(s) 1034
MmeI TCCRAC 1 cut(s) 1105
Mox20I TGGCCA 1 cut(s) 1201
Mph1103I ATGCAT 1 cut(s) 669
MscI TGGCCA 1 cut(s) 1201
MseI TTAA 5 cut(s) 645, 753, 821, 1110, 1316
MslI CAYNNNNRTG 2 cut(s) 491, 1259
Msp20I TGGCCA 1 cut(s) 1201
MspA1I CMGCKG 2 cut(s) 407, 1146
MspCI CTTAAG 1 cut(s) 752
MspI CCGG 1 cut(s) 359
MspR9I CCNGG 1 cut(s) 573
MunI CAATTG 1 cut(s) 774
Mva1269I GAATGC 1 cut(s) 228
MvaI CCWGG 1 cut(s) 573
MvnI CGCG 2 cut(s) 737, 1031
MwoI GCNNNNNNNGC 6 cut(s) 404, 424, 680, 1052, 1198, 1382
NdeII GATC 3 cut(s) 164, 295, 319
NlaIII CATG 6 cut(s) 38, 391, 658, 728, 1264, 1400
NlaIV GGNNCC 3 cut(s) 175, 309, 720
NmuCI GTSAC 2 cut(s) 265, 361
NsiI ATGCAT 1 cut(s) 669
NspV TTCGAA 1 cut(s) 616
OliI CACNNNNGTG 1 cut(s) 491
PaqCI CACCTGC 2 cut(s) 1051, 1169
PciSI GCTCTTC 1 cut(s) 408
PctI GAATGC 1 cut(s) 228
PfeI GAWTC 5 cut(s) 5, 568, 576, 659, 878
PflMI CCANNNNNTGG 1 cut(s) 1124
PfoI TCCNGGA 1 cut(s) 571
PkrI GCNGC 3 cut(s) 409, 454, 461
PleI GAGTC 1 cut(s) 1033
PpsI GAGTC 1 cut(s) 1033
PpuMI RGGWCCY 1 cut(s) 173
PshAI GACNNNNGTC 1 cut(s) 368
Psp5II RGGWCCY 1 cut(s) 173
Psp6I CCWGG 1 cut(s) 571
PspGI CCWGG 1 cut(s) 571
PspN4I GGNNCC 3 cut(s) 175, 309, 720
PspPI GGNCC 3 cut(s) 173, 779, 1005
PspPPI RGGWCCY 1 cut(s) 173
PstI CTGCAG 1 cut(s) 238
PstNI CAGNNNCTG 1 cut(s) 410
PsuI RGATCY 3 cut(s) 164, 295, 319
PvuII CAGCTG 1 cut(s) 407
RsaI GTAC 1 cut(s) 355
RsaNI GTAC 1 cut(s) 354
RseI CAYNNNNRTG 2 cut(s) 491, 1259
SapI GCTCTTC 1 cut(s) 408
SaqAI TTAA 5 cut(s) 645, 753, 821, 1110, 1316
SatI GCNGC 3 cut(s) 408, 453, 460
Sau3AI GATC 3 cut(s) 164, 295, 319
Sau96I GGNCC 3 cut(s) 173, 779, 1005
SbfI CCTGCAGG 1 cut(s) 238
ScaI AGTACT 1 cut(s) 355
SchI GAGTC 1 cut(s) 1034
ScrFI CCNGG 1 cut(s) 573
SdaI CCTGCAGG 1 cut(s) 238
SduI GDGCHC 1 cut(s) 1434
SfaNI GCATC 3 cut(s) 241, 271, 700
SfcI CTRYAG 1 cut(s) 234
SfuI TTCGAA 1 cut(s) 616
SinI GGWCC 1 cut(s) 173
SmiMI CAYNNNNRTG 2 cut(s) 491, 1259
SmlI CTYRAG 1 cut(s) 752
SmoI CTYRAG 1 cut(s) 752
Sse8387I CCTGCAGG 1 cut(s) 238
Sse9I AATT 7 cut(s) 693, 774, 788, 803, 999, 1225, 1423
SsiI CCGC 5 cut(s) 606, 926, 1029, 1094, 1146
SspMI CTAG 4 cut(s) 89, 170, 429, 866
StyD4I CCNGG 1 cut(s) 571
StyI CCWWGG 2 cut(s) 9, 1062
TaaI ACNGT 1 cut(s) 350
TaiI ACGT 1 cut(s) 267
TaqI TCGA 5 cut(s) 186, 316, 616, 876, 1157
TasI AATT 7 cut(s) 693, 774, 788, 803, 999, 1225, 1423
TatI WGTACW 1 cut(s) 353
TfiI GAWTC 5 cut(s) 5, 568, 576, 659, 878
Tru1I TTAA 5 cut(s) 645, 753, 821, 1110, 1316
Tru9I TTAA 5 cut(s) 645, 753, 821, 1110, 1316
TscAI CASTG 1 cut(s) 903
TseFI GTSAC 2 cut(s) 265, 361
TseI GCWGC 3 cut(s) 407, 452, 459
Tsp45I GTSAC 2 cut(s) 265, 361
TspDTI ATGAA 6 cut(s) 261, 305, 376, 1260, 1358, 1392
TspGWI ACGGA 1 cut(s) 578
TspRI CASTG 1 cut(s) 903
Van91I CCANNNNNTGG 1 cut(s) 1124
Vha464I CTTAAG 1 cut(s) 752
VneI GTGCAC 1 cut(s) 1430
VpaK11BI GGWCC 1 cut(s) 173
XbaI TCTAGA 1 cut(s) 865
XcmI CCANNNNNNNNNTGG 1 cut(s) 1121
XspI CTAG 4 cut(s) 89, 170, 429, 866
ZraI GACGTC 1 cut(s) 265
ZrmI AGTACT 1 cut(s) 355
Zsp2I ATGCAT 1 cut(s) 669
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.