Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8502967.1

Orthogroup ID

OG0005596

Physical Location & Seq

Genomic Coordinates Reverse (-)

1710 .. 3015

Gene Structure 1306 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8502967.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

atgagtcgttacgatgctaaccccttcgctgaggaagatgttaatccctttgcggatggtaaaggtctttcaccccttccccctgaacgctatgatcgcggtgcaacgattgatataccacttgataattctagggtaggtggaggttttagtaccgataaaaactggcctccattttaccccatcattcatcatgacattgcaaatgaaataccaatccacctacagaagatccagtatgttgcgttgacgacatatttgggtacgtttgttgctgtatacattcttctgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005886 GO:0006810 GO:0006897 GO:0006898 GO:0008150 GO:0012505 GO:0016020 GO:0016192 GO:0031410 GO:0031982 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0071944 GO:0097708 GO:0098657

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SCAMP

Protein Analysis

97

Amino Acids

10.88

Weight (kDa)

4.86

Isoelectric Point (pI)

51.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005596)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03550 AT1G03550 AT1G03550 AT1G03550 AT1G03550 AT1G03550 AT1G03550
fragaria_vesca	FvH4_6g44940 FvH4_6g44940
malus_domestica	MD09G1091600.v1.1 MD17G1081500.v1.1
prunus_persica	Prupe.3G233400_v2.0.a1 Prupe.3G233400_v2.0.a1 Prupe.3G233400_v2.0.a1 Prupe.3G233400_v2.0.a1 Prupe.3G233400_v2.0.a1 Prupe.6G353700_v2.0.a1
pyrus_communis	pycom17g07980
rosa_chinensis	RchiOBHm_Chr2g0162171
rosa_laevigata	RLG00000021325
rosa_multiflora	Rmu_co8502967.1_g000001
rosa_roxburghii	Rroxscaffold_2G00088270
rosa_rugosa	Rorug02G0494900
rosa_samantha	Rh2AG561400 Rh2BG574500 Rh2CG544700 Rh2DG584500
rosa_wichuraiana	Rw2G046490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	279
AccII	CGCG	1 cut(s)	99
AciI	CCGC	2 cut(s)	53, 99
AclWI	GGATC	1 cut(s)	226
AfaI	GTAC	2 cut(s)	154, 265
AlwI	GGATC	1 cut(s)	226
AoxI	GGCC	1 cut(s)	167
ArsI	GACNNNNNNTTYG	2 cut(s)	241, 273
AsuHPI	GGTGA	1 cut(s)	63
BaeI	ACNNNNGTAYC	2 cut(s)	255, 288
BarI	GAAGNNNNNNTAC	1 cut(s)	270
BbvCI	CCTCAGC	1 cut(s)	30
BccI	CCATC	2 cut(s)	50, 191
BfaI	CTAG	1 cut(s)	132
BfmI	CTRYAG	1 cut(s)	224
BmsI	GCATC	1 cut(s)	4
Bpu10I	CCTNAGC	1 cut(s)	30
BsaBI	GATNNNNATC	1 cut(s)	42
Bse1I	ACTGG	2 cut(s)	170, 235
Bse3DI	GCAATG	1 cut(s)	198
Bse8I	GATNNNNATC	1 cut(s)	42
BseGI	GGATG	1 cut(s)	61
BseJI	GATNNNNATC	1 cut(s)	42
BseMI	GCAATG	1 cut(s)	198
BseMII	CTCAG	1 cut(s)	21
BseNI	ACTGG	2 cut(s)	170, 235
Bsh1236I	CGCG	1 cut(s)	99
BshFI	GGCC	1 cut(s)	169
BsnI	GGCC	1 cut(s)	169
Bsp143I	GATC	2 cut(s)	94, 231
BspACI	CCGC	2 cut(s)	53, 99
BspANI	GGCC	1 cut(s)	169
BspCNI	CTCAG	1 cut(s)	22
BspFNI	CGCG	1 cut(s)	99
BspHI	TCATGA	1 cut(s)	193
BspPI	GGATC	1 cut(s)	226
BsrDI	GCAATG	1 cut(s)	198
BsrI	ACTGG	2 cut(s)	170, 235
BssMI	GATC	2 cut(s)	94, 231
BssNAI	GTATAC	1 cut(s)	280
Bst1107I	GTATAC	1 cut(s)	280
BstDEI	CTNAG	1 cut(s)	30
BstF5I	GGATG	1 cut(s)	61
BstFNI	CGCG	1 cut(s)	99
BstKTI	GATC	2 cut(s)	97, 234
BstMBI	GATC	2 cut(s)	94, 231
BstMWI	GCNNNNNNNGC	1 cut(s)	96
BstSFI	CTRYAG	1 cut(s)	224
BstUI	CGCG	1 cut(s)	99
BstX2I	RGATCY	1 cut(s)	231
BstYI	RGATCY	1 cut(s)	231
BstZ17I	GTATAC	1 cut(s)	280
BsuRI	GGCC	1 cut(s)	169
BtsCI	GGATG	1 cut(s)	61
CciI	TCATGA	1 cut(s)	193
Csp6I	GTAC	2 cut(s)	153, 264
CviAII	CATG	1 cut(s)	194
CviJI	RGCY	1 cut(s)	169
CviKI_1	RGCY	1 cut(s)	169
CviQI	GTAC	2 cut(s)	153, 264
DdeI	CTNAG	1 cut(s)	30
DpnI	GATC	2 cut(s)	96, 233
DpnII	GATC	2 cut(s)	94, 231
FaeI	CATG	1 cut(s)	197
FaiI	YATR	6 cut(s)	93, 116, 195, 240, 256, 280
FatI	CATG	1 cut(s)	193
FblI	GTMKAC	1 cut(s)	279
FokI	GGATG	1 cut(s)	68
FspBI	CTAG	1 cut(s)	132
HaeIII	GGCC	1 cut(s)	169
Hin1II	CATG	1 cut(s)	197
HincII	GTYRAC	1 cut(s)	249
HindII	GTYRAC	1 cut(s)	249
HinfI	GANTC	1 cut(s)	4
HphI	GGTGA	1 cut(s)	63
Hpy166II	GTNNAC	2 cut(s)	249, 280
Hpy188III	TCNNGA	1 cut(s)	194
Hpy8I	GTNNAC	2 cut(s)	249, 280
HpyAV	CCTTC	2 cut(s)	34, 86
HpyCH4IV	ACGT	1 cut(s)	266
HpyCH4V	TGCA	2 cut(s)	104, 203
HpyF10VI	GCNNNNNNNGC	1 cut(s)	96
HpyF3I	CTNAG	1 cut(s)	30
HpySE526I	ACGT	1 cut(s)	266
Hsp92II	CATG	1 cut(s)	197
Kzo9I	GATC	2 cut(s)	94, 231
LpnPI	CCDG	3 cut(s)	96, 151, 248
LweI	GCATC	1 cut(s)	4
MaeI	CTAG	1 cut(s)	132
MaeII	ACGT	1 cut(s)	266
MaeIII	GTNAC	1 cut(s)	8
MalI	GATC	2 cut(s)	96, 233
MboI	GATC	2 cut(s)	94, 231
MboII	GAAGA	3 cut(s)	47, 241, 278
MflI	RGATCY	1 cut(s)	231
MluCI	AATT	1 cut(s)	127
MlyI	GAGTC	1 cut(s)	13
MnlI	CCTC	3 cut(s)	25, 137, 180
MseI	TTAA	1 cut(s)	42
MvnI	CGCG	1 cut(s)	99
MwoI	GCNNNNNNNGC	1 cut(s)	96
NdeII	GATC	2 cut(s)	94, 231
NlaIII	CATG	1 cut(s)	197
PagI	TCATGA	1 cut(s)	193
PleI	GAGTC	1 cut(s)	12
PpsI	GAGTC	1 cut(s)	12
PsuI	RGATCY	1 cut(s)	231
RsaI	GTAC	2 cut(s)	154, 265
RsaNI	GTAC	2 cut(s)	153, 264
SaqAI	TTAA	1 cut(s)	42
Sau3AI	GATC	2 cut(s)	94, 231
SchI	GAGTC	1 cut(s)	13
SetI	ASST	5 cut(s)	67, 142, 148, 225, 269
SfaNI	GCATC	1 cut(s)	4
SfcI	CTRYAG	1 cut(s)	224
SgeI	CNNG	7 cut(s)	95, 110, 134, 144, 178, 206, 247
Sse9I	AATT	1 cut(s)	127
SsiI	CCGC	2 cut(s)	53, 99
SspMI	CTAG	1 cut(s)	132
TaiI	ACGT	1 cut(s)	269
TasI	AATT	1 cut(s)	127
Tru1I	TTAA	1 cut(s)	42
Tru9I	TTAA	1 cut(s)	42
TspDTI	ATGAA	2 cut(s)	179, 222
XmiI	GTMKAC	1 cut(s)	279
XspI	CTAG	1 cut(s)	132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.