Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0005596

Physical Location & Seq

Genomic Coordinates Reverse (-)

79123024 .. 79126720

Gene Structure 3697 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG561400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGAGTCGTTACGATGCTAACCCCTTCGCTGAGGAAGATGTTAATCCCTTTGCGGATGGTAAAGGTCTTTCACCCCTTCCCCCTGAACGCTATGATCGCGGTGCAACGATTGATATACCTCTTGATAATTCTAGGAGTTTAAAAGACAAGGAGAAGGAACTCAAAGCTAGAGAGGCTGAATTGAAAAGGAGGGAACAGGAAATAAAGCGGAAAGAAGAGAACGTAAAAAAAGATGGAGGTTTTAGTACCGACAAAAACTGGCCTCCATTTTACCCCATCATTCATCATGACATTGCAAATGAAATACCAATCCACCTACAGAAGATCCAGTATGTTGCGTTGACGACATATTTGGGTTTAGTTGTGACTCTGTTGTGGAATATTATTGCGGTTACTGTATTTTTTTTCCATGGAGGAGGTATAATCAATTGGATAATGTCTATTATCTACTTCGTAACAACTTGTCCTCTTGCATATTTTCTCTGGTATCGCCCTCTTTATCGTGCTATGAGGTACTTACAATTCAATGGAATGCCCTTGTTTCCGCATCACTACACAATAACTGTATATGAGGCTAGGCCTATGAAAATGATTACCCATTTGATGATTGTGCACTTCTATATGGTTGATCGGAGTTGGCTTTCAACCAGTCTGCTTCATACTTTACTATCTACTCAGAAGGTGTTAATGGGAAAATGCACTCTCTTCTACTCTATGTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005886 GO:0006810 GO:0006897 GO:0006898 GO:0008150 GO:0012505 GO:0016020 GO:0016192 GO:0031410 GO:0031982 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0071944 GO:0097708 GO:0098657

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SCAMP

Protein Analysis

240

Amino Acids

28.16

Weight (kDa)

8.9

Isoelectric Point (pI)

50.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SCAMP	PF04144	85 - 178	7.3e-31	SCAMP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0005596)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03550 AT1G03550 AT1G03550 AT1G03550 AT1G03550 AT1G03550 AT1G03550
fragaria_vesca	FvH4_6g44940 FvH4_6g44940
malus_domestica	MD09G1091600.v1.1 MD17G1081500.v1.1
prunus_persica	Prupe.3G233400_v2.0.a1 Prupe.3G233400_v2.0.a1 Prupe.3G233400_v2.0.a1 Prupe.3G233400_v2.0.a1 Prupe.3G233400_v2.0.a1 Prupe.6G353700_v2.0.a1
pyrus_communis	pycom17g07980
rosa_chinensis	RchiOBHm_Chr2g0162171
rosa_laevigata	RLG00000021325
rosa_multiflora	Rmu_co8502967.1_g000001
rosa_roxburghii	Rroxscaffold_2G00088270
rosa_rugosa	Rorug02G0494900
rosa_samantha	Rh2AG561400 Rh2BG574500 Rh2CG544700 Rh2DG584500
rosa_wichuraiana	Rw2G046490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	99
AciI	CCGC	5 cut(s)	53, 99, 208, 389, 545
AclWI	GGATC	1 cut(s)	319
AfaI	GTAC	2 cut(s)	247, 515
AgsI	TTSAA	3 cut(s)	184, 526, 645
AluBI	AGCT	1 cut(s)	167
AluI	AGCT	1 cut(s)	167
Alw21I	GWGCWC	1 cut(s)	615
Alw44I	GTGCAC	1 cut(s)	611
AlwI	GGATC	1 cut(s)	319
AoxI	GGCC	2 cut(s)	260, 578
ApaLI	GTGCAC	1 cut(s)	611
ArsI	GACNNNNNNTTYG	2 cut(s)	334, 366
AsuHPI	GGTGA	1 cut(s)	63
BaeGI	GKGCMC	1 cut(s)	615
Bbv12I	GWGCWC	1 cut(s)	615
BbvCI	CCTCAGC	1 cut(s)	30
BccI	CCATC	3 cut(s)	50, 227, 284
BfaI	CTAG	3 cut(s)	132, 168, 576
BfmI	CTRYAG	1 cut(s)	317
BmsI	GCATC	2 cut(s)	4, 556
Bpu10I	CCTNAGC	1 cut(s)	30
BsaBI	GATNNNNATC	1 cut(s)	42
BsaJI	CCNNGG	1 cut(s)	409
Bse1I	ACTGG	3 cut(s)	263, 328, 648
Bse3DI	GCAATG	1 cut(s)	291
Bse8I	GATNNNNATC	1 cut(s)	42
BseDI	CCNNGG	1 cut(s)	409
BseGI	GGATG	1 cut(s)	61
BseJI	GATNNNNATC	1 cut(s)	42
BseMI	GCAATG	1 cut(s)	291
BseMII	CTCAG	2 cut(s)	21, 689
BseNI	ACTGG	3 cut(s)	263, 328, 648
BseRI	GAGGAG	1 cut(s)	429
BseSI	GKGCMC	1 cut(s)	615
Bsh1236I	CGCG	1 cut(s)	99
BshFI	GGCC	2 cut(s)	262, 580
BsiHKAI	GWGCWC	1 cut(s)	615
BsmI	GAATGC	1 cut(s)	537
BsnI	GGCC	2 cut(s)	262, 580
Bsp1286I	GDGCHC	1 cut(s)	615
Bsp143I	GATC	3 cut(s)	94, 324, 628
Bsp19I	CCATGG	1 cut(s)	409
BspACI	CCGC	5 cut(s)	53, 99, 208, 389, 545
BspANI	GGCC	2 cut(s)	262, 580
BspCNI	CTCAG	2 cut(s)	22, 688
BspFNI	CGCG	1 cut(s)	99
BspHI	TCATGA	1 cut(s)	286
BspPI	GGATC	1 cut(s)	319
BsrDI	GCAATG	1 cut(s)	291
BsrI	ACTGG	3 cut(s)	263, 328, 648
BssECI	CCNNGG	1 cut(s)	409
BssMI	GATC	3 cut(s)	94, 324, 628
BssT1I	CCWWGG	1 cut(s)	409
Bst4CI	ACNGT	2 cut(s)	397, 565
Bst6I	CTCTTC	2 cut(s)	210, 710
BstDEI	CTNAG	2 cut(s)	30, 675
BstDSI	CCRYGG	1 cut(s)	409
BstF5I	GGATG	1 cut(s)	61
BstFNI	CGCG	1 cut(s)	99
BstKTI	GATC	3 cut(s)	97, 327, 631
BstMBI	GATC	3 cut(s)	94, 324, 628
BstMWI	GCNNNNNNNGC	2 cut(s)	96, 173
BstSFI	CTRYAG	1 cut(s)	317
BstSLI	GKGCMC	1 cut(s)	615
BstUI	CGCG	1 cut(s)	99
BstX2I	RGATCY	1 cut(s)	324
BstYI	RGATCY	1 cut(s)	324
BsuRI	GGCC	2 cut(s)	262, 580
BtgI	CCRYGG	1 cut(s)	409
BtsCI	GGATG	1 cut(s)	61
CciI	TCATGA	1 cut(s)	286
Csp6I	GTAC	2 cut(s)	246, 514
CviAII	CATG	2 cut(s)	287, 410
CviJI	RGCY	6 cut(s)	167, 176, 262, 575, 580, 640
CviKI_1	RGCY	6 cut(s)	167, 176, 262, 575, 580, 640
CviQI	GTAC	2 cut(s)	246, 514
DdeI	CTNAG	2 cut(s)	30, 675
DpnI	GATC	3 cut(s)	96, 326, 630
DpnII	GATC	3 cut(s)	94, 324, 628
DraI	TTTAAA	1 cut(s)	141
Eam1104I	CTCTTC	2 cut(s)	210, 710
EarI	CTCTTC	2 cut(s)	210, 710
Eco130I	CCWWGG	1 cut(s)	409
Eco147I	AGGCCT	1 cut(s)	580
EcoT14I	CCWWGG	1 cut(s)	409
ErhI	CCWWGG	1 cut(s)	409
FaeI	CATG	2 cut(s)	290, 413
FatI	CATG	2 cut(s)	286, 409
FokI	GGATG	1 cut(s)	68
FspBI	CTAG	3 cut(s)	132, 168, 576
HaeIII	GGCC	2 cut(s)	262, 580
Hin1II	CATG	2 cut(s)	290, 413
HincII	GTYRAC	1 cut(s)	342
HindII	GTYRAC	1 cut(s)	342
HinfI	GANTC	2 cut(s)	4, 367
HphI	GGTGA	1 cut(s)	63
Hpy166II	GTNNAC	2 cut(s)	342, 613
Hpy188I	TCNGA	2 cut(s)	633, 678
Hpy188III	TCNNGA	2 cut(s)	122, 287
Hpy8I	GTNNAC	2 cut(s)	342, 613
HpyAV	CCTTC	4 cut(s)	34, 86, 148, 673
HpyCH4III	ACNGT	2 cut(s)	397, 565
HpyCH4IV	ACGT	1 cut(s)	222
HpyCH4V	TGCA	5 cut(s)	104, 296, 473, 613, 699
HpyF10VI	GCNNNNNNNGC	2 cut(s)	96, 173
HpyF3I	CTNAG	2 cut(s)	30, 675
HpySE526I	ACGT	1 cut(s)	222
Hsp92II	CATG	2 cut(s)	290, 413
Kzo9I	GATC	3 cut(s)	94, 324, 628
LpnPI	CCDG	6 cut(s)	96, 182, 244, 341, 469, 661
LweI	GCATC	2 cut(s)	4, 556
MaeI	CTAG	3 cut(s)	132, 168, 576
MaeII	ACGT	1 cut(s)	222
MaeIII	GTNAC	4 cut(s)	8, 364, 391, 454
MalI	GATC	3 cut(s)	96, 326, 630
MboI	GATC	3 cut(s)	94, 324, 628
MboII	GAAGA	4 cut(s)	47, 227, 334, 697
MfeI	CAATTG	1 cut(s)	427
MflI	RGATCY	1 cut(s)	324
MhlI	GDGCHC	1 cut(s)	615
MluCI	AATT	4 cut(s)	127, 179, 427, 521
MlyI	GAGTC	2 cut(s)	13, 361
MseI	TTAA	3 cut(s)	42, 140, 686
MunI	CAATTG	1 cut(s)	427
Mva1269I	GAATGC	1 cut(s)	537
MvnI	CGCG	1 cut(s)	99
MwoI	GCNNNNNNNGC	2 cut(s)	96, 173
NcoI	CCATGG	1 cut(s)	409
NdeII	GATC	3 cut(s)	94, 324, 628
NlaIII	CATG	2 cut(s)	290, 413
NmuCI	GTSAC	1 cut(s)	364
PagI	TCATGA	1 cut(s)	286
PceI	AGGCCT	1 cut(s)	580
PctI	GAATGC	1 cut(s)	537
PleI	GAGTC	2 cut(s)	12, 361
PpsI	GAGTC	2 cut(s)	12, 361
PsuI	RGATCY	1 cut(s)	324
RsaI	GTAC	2 cut(s)	247, 515
RsaNI	GTAC	2 cut(s)	246, 514
SaqAI	TTAA	3 cut(s)	42, 140, 686
Sau3AI	GATC	3 cut(s)	94, 324, 628
SchI	GAGTC	2 cut(s)	13, 361
SduI	GDGCHC	1 cut(s)	615
SetI	ASST	9 cut(s)	67, 121, 169, 225, 241, 318, 421, 515, 684
SfaNI	GCATC	2 cut(s)	4, 556
SfcI	CTRYAG	1 cut(s)	317
Sse9I	AATT	4 cut(s)	127, 179, 427, 521
SseBI	AGGCCT	1 cut(s)	580
SsiI	CCGC	5 cut(s)	53, 99, 208, 389, 545
SspI	AATATT	1 cut(s)	382
SspMI	CTAG	3 cut(s)	132, 168, 576
StuI	AGGCCT	1 cut(s)	580
StyI	CCWWGG	1 cut(s)	409
TaaI	ACNGT	2 cut(s)	397, 565
TaiI	ACGT	1 cut(s)	225
TasI	AATT	4 cut(s)	127, 179, 427, 521
Tru1I	TTAA	3 cut(s)	42, 140, 686
Tru9I	TTAA	3 cut(s)	42, 140, 686
TseFI	GTSAC	1 cut(s)	364
Tsp45I	GTSAC	1 cut(s)	364
TspDTI	ATGAA	4 cut(s)	272, 315, 599, 647
VneI	GTGCAC	1 cut(s)	611
XspI	CTAG	3 cut(s)	132, 168, 576

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.