Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0005596

Physical Location & Seq

Genomic Coordinates Forward (+)

5982318 .. 5985428

Gene Structure 3111 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g07980.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGAATCGATACGATTCGAACCCTTTCGCCGACGAGGAGGTCAATCCCTTTGCGAATGGAGGTGGAGGTGTTGCCCCTGCAAATCCAAGGCTTTCGCCCCTCCCTCCGGAACCCTATGATCGCAATGCAACAATCGATATTCCTCTTGACAATTCAAAGAGTTTACAAGCAAAGGAGAAGGAACTCAAAGCTAAAGAGGCTGAATTGAAAAAGAGGGAACAGGAACTAAAGCGGAAAGAAGATGCCATAAAACAAGCTGGAGTTGTTATAGAGGAGAAGAACTGGCCGCCATTTTTCCCCATCATCCATCATGACATTGCAAATGAAATACCAATCCATCTGCAGAAGATCCAGTTTGATTGTGTGTCTCCTGTGGAATATTCTGGCAGTTACTGTAGCCTGGATCAAAGGAGAAGGTGTAATAATTTGGCTTCTGGCTATAATCTACTTCCTAGCAACTGTTCCTGTAGCCTATTTCGTCTGGTATCGCCCTCTTTATCGTGCTATGAGTCGTATTCTATTTCCGCAATGAAGAAATGTATATTAACCGTATTTCCTCCTGAACACTGTTTTCTTTCTGCTCTGAAGCTCATTTTTCTGCGGTGTGATCATGTTGACAGGGGTATTTTGCCTGCAATAGAACTGATGAGTTACAACGTTTCGGTTGGGATACTCTACTTCATTGGATTTGCATTGTACGTCTTGGAAACGCTTCTCAGCATTTGGGTTATTCAGCAAGTATACACGTATTTCCGAGGCAGCGGAAAGGCAGAAGAGGTGAAGCGGGAGGCTGCACGAACCACCATGATGGCAGCAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005886 GO:0006810 GO:0006897 GO:0006898 GO:0008150 GO:0012505 GO:0016020 GO:0016192 GO:0031410 GO:0031982 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0071944 GO:0097708 GO:0098657

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SCAMP

Protein Analysis

274

Amino Acids

30.79

Weight (kDa)

6.54

Isoelectric Point (pI)

54.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005596)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03550 AT1G03550 AT1G03550 AT1G03550 AT1G03550 AT1G03550 AT1G03550
fragaria_vesca	FvH4_6g44940 FvH4_6g44940
malus_domestica	MD09G1091600.v1.1 MD17G1081500.v1.1
prunus_persica	Prupe.3G233400_v2.0.a1 Prupe.3G233400_v2.0.a1 Prupe.3G233400_v2.0.a1 Prupe.3G233400_v2.0.a1 Prupe.3G233400_v2.0.a1 Prupe.6G353700_v2.0.a1
pyrus_communis	pycom17g07980
rosa_chinensis	RchiOBHm_Chr2g0162171
rosa_laevigata	RLG00000021325
rosa_multiflora	Rmu_co8502967.1_g000001
rosa_roxburghii	Rroxscaffold_2G00088270
rosa_rugosa	Rorug02G0494900
rosa_samantha	Rh2AG561400 Rh2BG574500 Rh2CG544700 Rh2DG584500
rosa_wichuraiana	Rw2G046490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	38
AccI	GTMKAC	1 cut(s)	741
AccIII	TCCGGA	1 cut(s)	106
AciI	CCGC	6 cut(s)	232, 287, 525, 601, 762, 784
AclI	AACGTT	1 cut(s)	657
AclWI	GGATC	2 cut(s)	343, 411
AcoI	YGGCCR	1 cut(s)	284
AcuI	CTGAAG	1 cut(s)	605
AfaI	GTAC	1 cut(s)	698
AfiI	CCNNNNNNNGG	1 cut(s)	106
AflIII	ACRYGT	1 cut(s)	744
AgsI	TTSAA	2 cut(s)	156, 208
AjnI	CCWGG	1 cut(s)	399
AluBI	AGCT	3 cut(s)	191, 257, 589
AluI	AGCT	3 cut(s)	191, 257, 589
Alw26I	GTCTC	1 cut(s)	372
AlwI	GGATC	2 cut(s)	343, 411
AlwNI	CAGNNNCTG	1 cut(s)	393
Aor13HI	TCCGGA	1 cut(s)	106
AoxI	GGCC	1 cut(s)	284
ApeKI	GCWGC	3 cut(s)	759, 791, 812
Asp700I	GAANNNNTTC	2 cut(s)	23, 711
AsuHPI	GGTGA	1 cut(s)	790
AsuII	TTCGAA	1 cut(s)	17
BbvI	GCAGC	2 cut(s)	771, 778
BccI	CCATC	4 cut(s)	308, 315, 345, 802
BciT130I	CCWGG	1 cut(s)	401
BciVI	GTATCC	1 cut(s)	663
BclI	TGATCA	1 cut(s)	607
BcoDI	GTCTC	1 cut(s)	372
BfaI	CTAG	1 cut(s)	453
BfmI	CTRYAG	3 cut(s)	341, 394, 466
BfuI	GTATCC	1 cut(s)	663
BisI	GCNGC	4 cut(s)	287, 760, 792, 813
BlsI	GCNGC	4 cut(s)	288, 761, 793, 814
Bme1390I	CCNGG	1 cut(s)	401
BmiI	GGNNCC	1 cut(s)	111
BmrFI	CCNGG	1 cut(s)	401
BmsI	GCATC	1 cut(s)	232
BpmI	CTGGAG	1 cut(s)	279
Bpu14I	TTCGAA	1 cut(s)	17
Bsa29I	ATCGAT	2 cut(s)	7, 135
BsaAI	YACGTR	1 cut(s)	747
BsaJI	CCNNGG	2 cut(s)	86, 754
BsaWI	WCCGGW	1 cut(s)	106
BsaXI	ACNNNNNCTCC	2 cut(s)	403, 433
Bsc4I	CCNNNNNNNGG	1 cut(s)	106
Bse1I	ACTGG	2 cut(s)	287, 352
Bse3DI	GCAATG	3 cut(s)	130, 315, 534
BseAI	TCCGGA	1 cut(s)	106
BseBI	CCWGG	1 cut(s)	401
BseCI	ATCGAT	2 cut(s)	7, 135
BseDI	CCNNGG	2 cut(s)	86, 754
BseGI	GGATG	1 cut(s)	303
BseLI	CCNNNNNNNGG	1 cut(s)	106
BseMI	GCAATG	3 cut(s)	130, 315, 534
BseMII	CTCAG	1 cut(s)	730
BseNI	ACTGG	2 cut(s)	287, 352
BseRI	GAGGAG	2 cut(s)	50, 287
BseXI	GCAGC	2 cut(s)	771, 778
BsgI	GTGCAG	1 cut(s)	777
BshFI	GGCC	1 cut(s)	286
BshVI	ATCGAT	2 cut(s)	7, 135
BsiSI	CCGG	1 cut(s)	107
BslI	CCNNNNNNNGG	1 cut(s)	106
BsmAI	GTCTC	1 cut(s)	372
BsnI	GGCC	1 cut(s)	286
Bsp119I	TTCGAA	1 cut(s)	17
Bsp13I	TCCGGA	1 cut(s)	106
Bsp143I	GATC	4 cut(s)	118, 348, 403, 607
BspACI	CCGC	6 cut(s)	232, 287, 525, 601, 762, 784
BspANI	GGCC	1 cut(s)	286
BspCNI	CTCAG	1 cut(s)	729
BspDI	ATCGAT	2 cut(s)	7, 135
BspEI	TCCGGA	1 cut(s)	106
BspHI	TCATGA	1 cut(s)	310
BspLI	GGNNCC	1 cut(s)	111
BspMAI	CTGCAG	1 cut(s)	345
BspPI	GGATC	2 cut(s)	343, 411
BspT104I	TTCGAA	1 cut(s)	17
BsrDI	GCAATG	3 cut(s)	130, 315, 534
BsrI	ACTGG	2 cut(s)	287, 352
BssECI	CCNNGG	2 cut(s)	86, 754
BssMI	GATC	4 cut(s)	118, 348, 403, 607
BssNAI	GTATAC	1 cut(s)	742
BssT1I	CCWWGG	1 cut(s)	86
Bst1107I	GTATAC	1 cut(s)	742
Bst2UI	CCWGG	1 cut(s)	401
Bst4CI	ACNGT	4 cut(s)	395, 461, 550, 569
Bst6I	CTCTTC	1 cut(s)	768
BstBAI	YACGTR	1 cut(s)	747
BstBI	TTCGAA	1 cut(s)	17
BstC8I	GCNNGC	1 cut(s)	633
BstDEI	CTNAG	1 cut(s)	716
BstF5I	GGATG	1 cut(s)	303
BstKTI	GATC	4 cut(s)	121, 351, 406, 610
BstMAI	GTCTC	1 cut(s)	372
BstMBI	GATC	4 cut(s)	118, 348, 403, 607
BstMWI	GCNNNNNNNGC	1 cut(s)	197
BstNI	CCWGG	1 cut(s)	401
BstSCI	CCNGG	1 cut(s)	399
BstSFI	CTRYAG	3 cut(s)	341, 394, 466
BstV1I	GCAGC	2 cut(s)	771, 778
BstX2I	RGATCY	1 cut(s)	348
BstXI	CCANNNNNNTGG	1 cut(s)	808
BstYI	RGATCY	1 cut(s)	348
BstZ17I	GTATAC	1 cut(s)	742
Bsu15I	ATCGAT	2 cut(s)	7, 135
BsuI	GTATCC	1 cut(s)	663
BsuRI	GGCC	1 cut(s)	286
BsuTUI	ATCGAT	2 cut(s)	7, 135
BtsCI	GGATG	1 cut(s)	303
BtsIMutI	CAGTG	1 cut(s)	565
Cac8I	GCNNGC	1 cut(s)	633
CaiI	CAGNNNCTG	1 cut(s)	393
CciI	TCATGA	1 cut(s)	310
ClaI	ATCGAT	2 cut(s)	7, 135
Csp6I	GTAC	1 cut(s)	697
CviAII	CATG	3 cut(s)	311, 611, 805
CviQI	GTAC	1 cut(s)	697
DdeI	CTNAG	1 cut(s)	716
DpnI	GATC	4 cut(s)	120, 350, 405, 609
DpnII	GATC	4 cut(s)	118, 348, 403, 607
DrdI	GACNNNNNNGTC	1 cut(s)	38
DseDI	GACNNNNNNGTC	1 cut(s)	38
EaeI	YGGCCR	1 cut(s)	284
Eam1104I	CTCTTC	1 cut(s)	768
EarI	CTCTTC	1 cut(s)	768
Eco130I	CCWWGG	1 cut(s)	86
Eco57I	CTGAAG	1 cut(s)	605
EcoRII	CCWGG	1 cut(s)	399
EcoT14I	CCWWGG	1 cut(s)	86
ErhI	CCWWGG	1 cut(s)	86
FaeI	CATG	3 cut(s)	314, 614, 808
FatI	CATG	3 cut(s)	310, 610, 804
FauI	CCCGC	1 cut(s)	777
FbaI	TGATCA	1 cut(s)	607
FblI	GTMKAC	1 cut(s)	741
Fnu4HI	GCNGC	4 cut(s)	287, 760, 792, 813
FokI	GGATG	1 cut(s)	290
Fsp4HI	GCNGC	4 cut(s)	287, 760, 792, 813
FspBI	CTAG	1 cut(s)	453
GluI	GCNGC	4 cut(s)	287, 760, 792, 813
GsuI	CTGGAG	1 cut(s)	279
HaeIII	GGCC	1 cut(s)	286
HapII	CCGG	1 cut(s)	107
Hin1II	CATG	3 cut(s)	314, 614, 808
HincII	GTYRAC	1 cut(s)	616
HindII	GTYRAC	1 cut(s)	616
HinfI	GANTC	3 cut(s)	4, 14, 509
HpaII	CCGG	1 cut(s)	107
HphI	GGTGA	1 cut(s)	790
Hpy166II	GTNNAC	3 cut(s)	164, 616, 742
Hpy188I	TCNGA	2 cut(s)	585, 755
Hpy188III	TCNNGA	4 cut(s)	107, 146, 311, 560
Hpy8I	GTNNAC	3 cut(s)	164, 616, 742
Hpy99I	CGWCG	1 cut(s)	35
HpyAV	CCTTC	2 cut(s)	172, 408
HpyCH4III	ACNGT	4 cut(s)	395, 461, 550, 569
HpyCH4IV	ACGT	3 cut(s)	657, 699, 746
HpyCH4V	TGCA	7 cut(s)	80, 128, 320, 343, 635, 692, 794
HpyF10VI	GCNNNNNNNGC	1 cut(s)	197
HpyF3I	CTNAG	1 cut(s)	716
HpySE526I	ACGT	3 cut(s)	657, 699, 746
Hsp92II	CATG	3 cut(s)	314, 614, 808
Kpn2I	TCCGGA	1 cut(s)	106
Ksp22I	TGATCA	1 cut(s)	607
Kzo9I	GATC	4 cut(s)	118, 348, 403, 607
Lsp1109I	GCAGC	2 cut(s)	771, 778
LweI	GCATC	1 cut(s)	232
MaeI	CTAG	1 cut(s)	453
MaeII	ACGT	3 cut(s)	657, 699, 746
MaeIII	GTNAC	2 cut(s)	389, 650
MalI	GATC	4 cut(s)	120, 350, 405, 609
MboI	GATC	4 cut(s)	118, 348, 403, 607
MboII	GAAGA	5 cut(s)	251, 289, 358, 544, 785
MflI	RGATCY	1 cut(s)	348
MluCI	AATT	3 cut(s)	151, 203, 424
MlyI	GAGTC	1 cut(s)	518
MroI	TCCGGA	1 cut(s)	106
MroXI	GAANNNNTTC	2 cut(s)	23, 711
MseI	TTAA	1 cut(s)	545
MslI	CAYNNNNRTG	1 cut(s)	806
MspA1I	CMGCKG	1 cut(s)	762
MspI	CCGG	1 cut(s)	107
MspR9I	CCNGG	1 cut(s)	401
MvaI	CCWGG	1 cut(s)	401
MwoI	GCNNNNNNNGC	1 cut(s)	197
NdeII	GATC	4 cut(s)	118, 348, 403, 607
NlaIII	CATG	3 cut(s)	314, 614, 808
NlaIV	GGNNCC	1 cut(s)	111
NspV	TTCGAA	1 cut(s)	17
PagI	TCATGA	1 cut(s)	310
PdmI	GAANNNNTTC	2 cut(s)	23, 711
PfeI	GAWTC	2 cut(s)	4, 14
PkrI	GCNGC	4 cut(s)	288, 761, 793, 814
PleI	GAGTC	1 cut(s)	517
PpsI	GAGTC	1 cut(s)	517
Ppu21I	YACGTR	1 cut(s)	747
Psp1406I	AACGTT	1 cut(s)	657
Psp6I	CCWGG	1 cut(s)	399
PspGI	CCWGG	1 cut(s)	399
PspN4I	GGNNCC	1 cut(s)	111
PstI	CTGCAG	1 cut(s)	345
PstNI	CAGNNNCTG	1 cut(s)	393
PsuI	RGATCY	1 cut(s)	348
RsaI	GTAC	1 cut(s)	698
RsaNI	GTAC	1 cut(s)	697
RseI	CAYNNNNRTG	1 cut(s)	806
SaqAI	TTAA	1 cut(s)	545
SatI	GCNGC	4 cut(s)	287, 760, 792, 813
Sau3AI	GATC	4 cut(s)	118, 348, 403, 607
SchI	GAGTC	1 cut(s)	518
ScrFI	CCNGG	1 cut(s)	401
SfaNI	GCATC	1 cut(s)	232
SfcI	CTRYAG	3 cut(s)	341, 394, 466
SfuI	TTCGAA	1 cut(s)	17
SmiMI	CAYNNNNRTG	1 cut(s)	806
Sse9I	AATT	3 cut(s)	151, 203, 424
SsiI	CCGC	6 cut(s)	232, 287, 525, 601, 762, 784
SspI	AATATT	1 cut(s)	380
SspMI	CTAG	1 cut(s)	453
StyD4I	CCNGG	1 cut(s)	399
StyI	CCWWGG	1 cut(s)	86
TaaI	ACNGT	4 cut(s)	395, 461, 550, 569
TaiI	ACGT	3 cut(s)	660, 702, 749
TaqI	TCGA	3 cut(s)	7, 17, 135
TasI	AATT	3 cut(s)	151, 203, 424
TauI	GCSGC	1 cut(s)	289
TfiI	GAWTC	2 cut(s)	4, 14
Tru1I	TTAA	1 cut(s)	545
Tru9I	TTAA	1 cut(s)	545
TscAI	CASTG	1 cut(s)	572
TseI	GCWGC	3 cut(s)	759, 791, 812
TspDTI	ATGAA	4 cut(s)	17, 339, 545, 670
TspRI	CASTG	1 cut(s)	572
XmiI	GTMKAC	1 cut(s)	741
XmnI	GAANNNNTTC	2 cut(s)	23, 711
XspI	CTAG	1 cut(s)	453

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.