Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0009598

Physical Location & Seq

Genomic Coordinates Forward (+)

34817814 .. 34821159

Gene Structure 3346 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g45340.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGGCAACTCTAACCGCCGCAAGACGAGGAGGCAGTATCCTCTGCCCCCACCATGAACCCTTCACCCGCCACCGCTTCCTCTCTCGTCCCCTCCTCCTCCTCCACCCTCACCCATCAAACCCCACCTCCACCTTCCTCACCTACTCCAAGCCCATTGGGCCCATTTCCAAACTCACCTCCCCAAGAGCCGCCGACACCTCCTCCGTCCCCACCACCGCCGACAAAGCCATCGTCACCGACGACCAGTTCTCCCTCGCCAAGGTTTCGTTTGGTACTATTGGACTAGGTGGTGGGATTACGCTGTTAGGGTATGGTTTTGGTGCGTACTTTAATATCCTACCTGGGTCTGAATGGTCTGCATTGATGTTAACATATGGGTTTCCTCTTGCAATCATTGGCATGGCTTTCAAGTATGCAGAACTAAAGCCGGTGCCGTGCTTGACTTATTTGGATGCTCAGCAATTAAGGGAGACGTGTGCCACCCCTATTCTTATACAGGTCAGGAATGATGTTACGAGATACCGCTATGGGGATGAGCAGCATTTGGATGAAGCGTTAAAACGAATTTTCCAGTATGGTCAGGGTGGGGGAATTCCTCGGAGGAGTGCACCTGTTCTACAAAAGATTCGTGAAGAGGTCACAGAAGATGGTAGATATTGTCTAGTCCTGGTGTTTGAGGCAAAATCTCTGCAGTTGTCTGATTTTGAACAAAGACAGGCTAAATTTACATCATTCTTCGGACCAGGCATTACAGCTGAAATTGCCAAGGGAGAGGAGAATCTATATGAAGTCAAACTTATTTCCAACTCCAACGTCAACCCCACTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2854 UMP1

Protein Analysis

277

Amino Acids

30.39

Weight (kDa)

8.6

Isoelectric Point (pI)

35.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009598)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G38660 AT5G38660
fragaria_vesca	FvH4_6g45340 FvH4_6g45340 FvH4_6g45340
malus_domestica	MD09G1084900.v1.1 MD17G1074400.v1.1
prunus_persica	Prupe.3G239600_v2.0.a1
pyrus_communis	pycom09g01050 pycom17g07500
rosa_chinensis	RchiOBHm_Chr2g0163121
rosa_laevigata	RLG00000021375
rosa_multiflora	Rmu_sc0002045.1_g000041 Rmu_sc0002045.1_g000043 Rmu_sc0003984.1_g000019
rosa_roxburghii	Rroxscaffold_2G00087530
rosa_rugosa	Rorug02G0500700 Rorug02G0500700
rosa_samantha	Rh2BG579300 Rh2CG549200 Rh2DG589600
rosa_wichuraiana	Rw2G046950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	430
AciI	CCGC	7 cut(s)	15, 18, 67, 73, 189, 216, 523
AcsI	RAATTY	3 cut(s)	564, 591, 722
AfaI	GTAC	2 cut(s)	274, 326
AfiI	CCNNNNNNNGG	2 cut(s)	259, 529
AflIII	ACRYGT	1 cut(s)	473
AgsI	TTSAA	2 cut(s)	409, 707
AjiI	CACGTC	1 cut(s)	474
AjnI	CCWGG	3 cut(s)	340, 666, 742
AluBI	AGCT	1 cut(s)	755
AluI	AGCT	1 cut(s)	755
Alw21I	GWGCWC	1 cut(s)	610
Alw26I	GTCTC	1 cut(s)	464
Alw44I	GTGCAC	1 cut(s)	606
AoxI	GGCC	1 cut(s)	158
ApaI	GGGCCC	1 cut(s)	162
ApaLI	GTGCAC	1 cut(s)	606
ApeKI	GCWGC	1 cut(s)	538
ApoI	RAATTY	3 cut(s)	564, 591, 722
ArsI	GACNNNNNNTTYG	2 cut(s)	216, 248
AspS9I	GGNCC	3 cut(s)	158, 159, 740
AsuHPI	GGTGA	5 cut(s)	55, 101, 130, 166, 226
AvaII	GGWCC	1 cut(s)	740
BaeGI	GKGCMC	2 cut(s)	162, 610
BanI	GGYRCC	1 cut(s)	430
BanII	GRGCYC	1 cut(s)	162
Bbv12I	GWGCWC	1 cut(s)	610
BbvI	GCAGC	1 cut(s)	550
BccI	CCATC	3 cut(s)	121, 236, 641
BceAI	ACGGC	1 cut(s)	418
BciT130I	CCWGG	3 cut(s)	342, 668, 744
BciVI	GTATCC	1 cut(s)	47
BcoDI	GTCTC	1 cut(s)	464
BfaI	CTAG	2 cut(s)	284, 662
BfmI	CTRYAG	1 cut(s)	689
BfuI	GTATCC	1 cut(s)	47
BglI	GCCNNNNNGGC	1 cut(s)	157
BisI	GCNGC	3 cut(s)	18, 189, 539
BlpI	GCTNAGC	1 cut(s)	456
BlsI	GCNGC	3 cut(s)	19, 190, 540
Bme1390I	CCNGG	3 cut(s)	342, 668, 744
Bme18I	GGWCC	1 cut(s)	740
BmgBI	CACGTC	1 cut(s)	474
BmgT120I	GGNCC	3 cut(s)	158, 159, 740
BmiI	GGNNCC	2 cut(s)	160, 432
BmrFI	CCNGG	3 cut(s)	342, 668, 744
BmsI	GCATC	1 cut(s)	442
Bpu1102I	GCTNAGC	1 cut(s)	456
BsaJI	CCNNGG	4 cut(s)	258, 341, 596, 765
BsaXI	ACNNNNNCTCC	6 cut(s)	110, 140, 185, 215, 233, 263
Bsc4I	CCNNNNNNNGG	2 cut(s)	259, 529
Bse118I	RCCGGY	1 cut(s)	427
Bse1I	ACTGG	2 cut(s)	244, 571
BseBI	CCWGG	3 cut(s)	342, 668, 744
BseDI	CCNNGG	4 cut(s)	258, 341, 596, 765
BseGI	GGATG	3 cut(s)	457, 538, 553
BseLI	CCNNNNNNNGG	2 cut(s)	259, 529
BseMII	CTCAG	1 cut(s)	470
BseNI	ACTGG	2 cut(s)	244, 571
BseRI	GAGGAG	7 cut(s)	42, 83, 86, 89, 190, 616, 788
BseSI	GKGCMC	2 cut(s)	162, 610
BseXI	GCAGC	1 cut(s)	550
BshFI	GGCC	1 cut(s)	160
BshNI	GGYRCC	1 cut(s)	430
BsiHKAI	GWGCWC	1 cut(s)	610
BsiSI	CCGG	1 cut(s)	428
BslFI	GGGAC	2 cut(s)	72, 191
BslI	CCNNNNNNNGG	2 cut(s)	259, 529
BsmAI	GTCTC	1 cut(s)	464
BsmBI	CGTCTC	1 cut(s)	464
BsmFI	GGGAC	2 cut(s)	72, 191
BsnI	GGCC	1 cut(s)	160
Bsp120I	GGGCCC	1 cut(s)	158
Bsp1286I	GDGCHC	2 cut(s)	162, 610
Bsp1720I	GCTNAGC	1 cut(s)	456
BspACI	CCGC	7 cut(s)	15, 18, 67, 73, 189, 216, 523
BspANI	GGCC	1 cut(s)	160
BspCNI	CTCAG	1 cut(s)	469
BspLI	GGNNCC	2 cut(s)	160, 432
BspMAI	CTGCAG	1 cut(s)	693
BspT107I	GGYRCC	1 cut(s)	430
BsrFI	RCCGGY	1 cut(s)	427
BsrI	ACTGG	2 cut(s)	244, 571
BssAI	RCCGGY	1 cut(s)	427
BssECI	CCNNGG	4 cut(s)	258, 341, 596, 765
BssT1I	CCWWGG	2 cut(s)	258, 765
Bst2UI	CCWGG	3 cut(s)	342, 668, 744
Bst6I	CTCTTC	1 cut(s)	627
BstDEI	CTNAG	1 cut(s)	456
BstENI	CCTNNNNNAGG	1 cut(s)	257
BstF5I	GGATG	3 cut(s)	457, 538, 553
BstMAI	GTCTC	1 cut(s)	464
BstMWI	GCNNNNNNNGC	3 cut(s)	157, 224, 761
BstNI	CCWGG	3 cut(s)	342, 668, 744
BstSCI	CCNGG	3 cut(s)	340, 666, 742
BstSFI	CTRYAG	1 cut(s)	689
BstSLI	GKGCMC	2 cut(s)	162, 610
BstV1I	GCAGC	1 cut(s)	550
BsuI	GTATCC	1 cut(s)	47
BsuRI	GGCC	1 cut(s)	160
BtrI	CACGTC	1 cut(s)	474
BtsCI	GGATG	3 cut(s)	457, 538, 553
BtsI	GCAGTG	1 cut(s)	822
BtsIMutI	CAGTG	1 cut(s)	822
Cfr10I	RCCGGY	1 cut(s)	427
Cfr13I	GGNCC	3 cut(s)	158, 159, 740
Csp6I	GTAC	2 cut(s)	273, 325
CviAII	CATG	2 cut(s)	53, 400
CviJI	RGCY	8 cut(s)	151, 160, 188, 227, 404, 427, 719, 755
CviKI_1	RGCY	8 cut(s)	151, 160, 188, 227, 404, 427, 719, 755
CviQI	GTAC	2 cut(s)	273, 325
DdeI	CTNAG	1 cut(s)	456
Eam1104I	CTCTTC	1 cut(s)	627
EarI	CTCTTC	1 cut(s)	627
Eco130I	CCWWGG	2 cut(s)	258, 765
Eco24I	GRGCYC	1 cut(s)	162
Eco47I	GGWCC	1 cut(s)	740
EcoNI	CCTNNNNNAGG	1 cut(s)	257
EcoRI	GAATTC	1 cut(s)	591
EcoRII	CCWGG	3 cut(s)	340, 666, 742
EcoT14I	CCWWGG	2 cut(s)	258, 765
EcoT38I	GRGCYC	1 cut(s)	162
ErhI	CCWWGG	2 cut(s)	258, 765
Esp3I	CGTCTC	1 cut(s)	464
FaeI	CATG	2 cut(s)	56, 403
FalI	AAGNNNNNCTT	2 cut(s)	780, 812
FaqI	GGGAC	2 cut(s)	72, 191
FatI	CATG	2 cut(s)	52, 399
FauI	CCCGC	1 cut(s)	74
FauNDI	CATATG	1 cut(s)	373
Fnu4HI	GCNGC	3 cut(s)	18, 189, 539
FokI	GGATG	3 cut(s)	464, 545, 560
FriOI	GRGCYC	1 cut(s)	162
Fsp4HI	GCNGC	3 cut(s)	18, 189, 539
FspBI	CTAG	2 cut(s)	284, 662
GluI	GCNGC	3 cut(s)	18, 189, 539
HaeIII	GGCC	1 cut(s)	160
HapII	CCGG	1 cut(s)	428
Hin1II	CATG	2 cut(s)	56, 403
HincII	GTYRAC	2 cut(s)	369, 817
HindII	GTYRAC	2 cut(s)	369, 817
HinfI	GANTC	2 cut(s)	625, 778
HpaI	GTTAAC	1 cut(s)	369
HpaII	CCGG	1 cut(s)	428
HphI	GGTGA	5 cut(s)	55, 101, 130, 166, 226
Hpy166II	GTNNAC	3 cut(s)	369, 608, 817
Hpy188I	TCNGA	4 cut(s)	349, 600, 700, 740
Hpy188III	TCNNGA	2 cut(s)	502, 629
Hpy8I	GTNNAC	3 cut(s)	369, 608, 817
Hpy99I	CGWCG	1 cut(s)	242
HpyAV	CCTTC	2 cut(s)	70, 142
HpyCH4IV	ACGT	2 cut(s)	473, 813
HpyCH4V	TGCA	6 cut(s)	359, 389, 416, 608, 691, 827
HpyF10VI	GCNNNNNNNGC	3 cut(s)	157, 224, 761
HpyF3I	CTNAG	1 cut(s)	456
HpySE526I	ACGT	2 cut(s)	473, 813
Hsp92II	CATG	2 cut(s)	56, 403
KspAI	GTTAAC	1 cut(s)	369
Lsp1109I	GCAGC	1 cut(s)	550
LweI	GCATC	1 cut(s)	442
MaeI	CTAG	2 cut(s)	284, 662
MaeII	ACGT	2 cut(s)	473, 813
MaeIII	GTNAC	3 cut(s)	232, 511, 637
MboII	GAAGA	3 cut(s)	644, 656, 727
MhlI	GDGCHC	2 cut(s)	162, 610
MluCI	AATT	5 cut(s)	461, 564, 591, 722, 759
MmeI	TCCRAC	1 cut(s)	828
MseI	TTAA	4 cut(s)	330, 368, 464, 557
MslI	CAYNNNNRTG	2 cut(s)	398, 546
MspA1I	CMGCKG	1 cut(s)	755
MspI	CCGG	1 cut(s)	428
MspR9I	CCNGG	3 cut(s)	342, 668, 744
MvaI	CCWGG	3 cut(s)	342, 668, 744
MwoI	GCNNNNNNNGC	3 cut(s)	157, 224, 761
NdeI	CATATG	1 cut(s)	373
NlaIII	CATG	2 cut(s)	56, 403
NlaIV	GGNNCC	2 cut(s)	160, 432
NmuCI	GTSAC	2 cut(s)	232, 637
PcsI	WCGNNNNNNNCGW	1 cut(s)	237
PfeI	GAWTC	2 cut(s)	625, 778
PkrI	GCNGC	3 cut(s)	19, 190, 540
Psp6I	CCWGG	3 cut(s)	340, 666, 742
PspGI	CCWGG	3 cut(s)	340, 666, 742
PspN4I	GGNNCC	2 cut(s)	160, 432
PspOMI	GGGCCC	1 cut(s)	158
PspPI	GGNCC	3 cut(s)	158, 159, 740
PstI	CTGCAG	1 cut(s)	693
PvuII	CAGCTG	1 cut(s)	755
RsaI	GTAC	2 cut(s)	274, 326
RsaNI	GTAC	2 cut(s)	273, 325
RseI	CAYNNNNRTG	2 cut(s)	398, 546
SaqAI	TTAA	4 cut(s)	330, 368, 464, 557
SatI	GCNGC	3 cut(s)	18, 189, 539
Sau96I	GGNCC	3 cut(s)	158, 159, 740
ScrFI	CCNGG	3 cut(s)	342, 668, 744
SduI	GDGCHC	2 cut(s)	162, 610
SfaNI	GCATC	1 cut(s)	442
SfcI	CTRYAG	1 cut(s)	689
SinI	GGWCC	1 cut(s)	740
SmiMI	CAYNNNNRTG	2 cut(s)	398, 546
Sse9I	AATT	5 cut(s)	461, 564, 591, 722, 759
SsiI	CCGC	7 cut(s)	15, 18, 67, 73, 189, 216, 523
SspMI	CTAG	2 cut(s)	284, 662
StyD4I	CCNGG	3 cut(s)	340, 666, 742
StyI	CCWWGG	2 cut(s)	258, 765
TaiI	ACGT	2 cut(s)	476, 816
TasI	AATT	5 cut(s)	461, 564, 591, 722, 759
TauI	GCSGC	2 cut(s)	20, 191
TfiI	GAWTC	2 cut(s)	625, 778
Tru1I	TTAA	4 cut(s)	330, 368, 464, 557
Tru9I	TTAA	4 cut(s)	330, 368, 464, 557
TscAI	CASTG	1 cut(s)	829
TseFI	GTSAC	2 cut(s)	232, 637
TseI	GCWGC	1 cut(s)	538
Tsp45I	GTSAC	2 cut(s)	232, 637
TspDTI	ATGAA	3 cut(s)	69, 564, 801
TspGWI	ACGGA	1 cut(s)	193
TspRI	CASTG	1 cut(s)	829
VneI	GTGCAC	1 cut(s)	606
VpaK11BI	GGWCC	1 cut(s)	740
XagI	CCTNNNNNAGG	1 cut(s)	257
XapI	RAATTY	3 cut(s)	564, 591, 722
XspI	CTAG	2 cut(s)	284, 662

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.