Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002045.1

Orthogroup ID

OG0009598

Physical Location & Seq

Genomic Coordinates Reverse (-)

220660 .. 223228

Gene Structure 2569 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002045.1_g000043.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

atgttaacatatgggtttcctcttgcaatcattggtatggctttcaagtatgcagaactaaagccggtgccatgcttgacttatttggatgctcagcaattaagggaaacagctgccaccccgattcttatgcaggtcaggaatgatgttacgagataccgctatggggatgagcagcatttggatgaggcgttaaagcgaattttccagtatggtcagggtgggggaattgctcggaggagtgcgcctgttctacaaaggattcgtgaagaggtcacagaagatggtagatactgtttagtcctggtgtttgaggcaaaatctctacagttgtctgattttgaacaaagacaggctaaatttacatcattcttcggaccaggcattacagctgaaattgccaagggagaggagaatttatatgaagtcaaacttatttccaactccaacgtcaaccccactgcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2854 UMP1

Protein Analysis

155

Amino Acids

17.53

Weight (kDa)

5.9

Isoelectric Point (pI)

37.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009598)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G38660 AT5G38660
fragaria_vesca	FvH4_6g45340 FvH4_6g45340 FvH4_6g45340
malus_domestica	MD09G1084900.v1.1 MD17G1074400.v1.1
prunus_persica	Prupe.3G239600_v2.0.a1
pyrus_communis	pycom09g01050 pycom17g07500
rosa_chinensis	RchiOBHm_Chr2g0163121
rosa_laevigata	RLG00000021375
rosa_multiflora	Rmu_sc0002045.1_g000041 Rmu_sc0002045.1_g000043 Rmu_sc0003984.1_g000019
rosa_roxburghii	Rroxscaffold_2G00087530
rosa_rugosa	Rorug02G0500700 Rorug02G0500700
rosa_samantha	Rh2BG579300 Rh2CG549200 Rh2DG589600
rosa_wichuraiana	Rw2G046950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	124
AccB1I	GGYRCC	1 cut(s)	67
AciI	CCGC	1 cut(s)	160
AcsI	RAATTY	3 cut(s)	201, 359, 415
AfiI	CCNNNNNNNGG	1 cut(s)	166
AgsI	TTSAA	2 cut(s)	46, 344
AjnI	CCWGG	2 cut(s)	303, 379
AluBI	AGCT	2 cut(s)	113, 392
AluI	AGCT	2 cut(s)	113, 392
ApeKI	GCWGC	2 cut(s)	113, 175
ApoI	RAATTY	3 cut(s)	201, 359, 415
AspLEI	GCGC	1 cut(s)	247
AspS9I	GGNCC	1 cut(s)	377
AvaII	GGWCC	1 cut(s)	377
BanI	GGYRCC	1 cut(s)	67
BbvI	GCAGC	2 cut(s)	100, 187
BccI	CCATC	1 cut(s)	278
BcgI	CGANNNNNNTGC	2 cut(s)	112, 146
BciT130I	CCWGG	2 cut(s)	305, 381
BfmI	CTRYAG	1 cut(s)	326
BfuAI	ACCTGC	1 cut(s)	124
BisI	GCNGC	2 cut(s)	114, 176
BlpI	GCTNAGC	1 cut(s)	93
BlsI	GCNGC	2 cut(s)	115, 177
Bme1390I	CCNGG	2 cut(s)	305, 381
Bme18I	GGWCC	1 cut(s)	377
BmgT120I	GGNCC	1 cut(s)	377
BmiI	GGNNCC	1 cut(s)	69
BmrFI	CCNGG	2 cut(s)	305, 381
BmsI	GCATC	1 cut(s)	79
Bpu1102I	GCTNAGC	1 cut(s)	93
BsaJI	CCNNGG	1 cut(s)	402
Bsc4I	CCNNNNNNNGG	1 cut(s)	166
Bse118I	RCCGGY	1 cut(s)	64
Bse1I	ACTGG	1 cut(s)	208
BseBI	CCWGG	2 cut(s)	305, 381
BseDI	CCNNGG	1 cut(s)	402
BseGI	GGATG	3 cut(s)	94, 175, 190
BseLI	CCNNNNNNNGG	1 cut(s)	166
BseMII	CTCAG	1 cut(s)	107
BseNI	ACTGG	1 cut(s)	208
BseRI	GAGGAG	2 cut(s)	253, 425
BseXI	GCAGC	2 cut(s)	100, 187
BshNI	GGYRCC	1 cut(s)	67
BsiSI	CCGG	1 cut(s)	65
BslI	CCNNNNNNNGG	1 cut(s)	166
Bsp1720I	GCTNAGC	1 cut(s)	93
BspACI	CCGC	1 cut(s)	160
BspCNI	CTCAG	1 cut(s)	106
BspLI	GGNNCC	1 cut(s)	69
BspMI	ACCTGC	1 cut(s)	124
BspT107I	GGYRCC	1 cut(s)	67
BsrFI	RCCGGY	1 cut(s)	64
BsrI	ACTGG	1 cut(s)	208
BssAI	RCCGGY	1 cut(s)	64
BssECI	CCNNGG	1 cut(s)	402
BssT1I	CCWWGG	1 cut(s)	402
Bst2UI	CCWGG	2 cut(s)	305, 381
Bst4CI	ACNGT	2 cut(s)	296, 330
Bst6I	CTCTTC	1 cut(s)	264
BstDEI	CTNAG	1 cut(s)	93
BstF5I	GGATG	3 cut(s)	94, 175, 190
BstHHI	GCGC	1 cut(s)	247
BstMWI	GCNNNNNNNGC	1 cut(s)	398
BstNI	CCWGG	2 cut(s)	305, 381
BstSCI	CCNGG	2 cut(s)	303, 379
BstSFI	CTRYAG	1 cut(s)	326
BstV1I	GCAGC	2 cut(s)	100, 187
BtsCI	GGATG	3 cut(s)	94, 175, 190
BtsI	GCAGTG	1 cut(s)	459
BtsIMutI	CAGTG	1 cut(s)	459
BveI	ACCTGC	1 cut(s)	124
CfoI	GCGC	1 cut(s)	247
Cfr10I	RCCGGY	1 cut(s)	64
Cfr13I	GGNCC	1 cut(s)	377
CviAII	CATG	1 cut(s)	72
CviJI	RGCY	5 cut(s)	41, 64, 113, 356, 392
CviKI_1	RGCY	5 cut(s)	41, 64, 113, 356, 392
DdeI	CTNAG	1 cut(s)	93
Eam1104I	CTCTTC	1 cut(s)	264
EarI	CTCTTC	1 cut(s)	264
Eco130I	CCWWGG	1 cut(s)	402
Eco47I	GGWCC	1 cut(s)	377
EcoRII	CCWGG	2 cut(s)	303, 379
EcoT14I	CCWWGG	1 cut(s)	402
ErhI	CCWWGG	1 cut(s)	402
FaeI	CATG	1 cut(s)	75
FalI	AAGNNNNNCTT	2 cut(s)	417, 449
FatI	CATG	1 cut(s)	71
FauNDI	CATATG	1 cut(s)	10
Fnu4HI	GCNGC	2 cut(s)	114, 176
FokI	GGATG	3 cut(s)	101, 182, 197
Fsp4HI	GCNGC	2 cut(s)	114, 176
GlaI	GCGC	1 cut(s)	246
GluI	GCNGC	2 cut(s)	114, 176
HapII	CCGG	1 cut(s)	65
HhaI	GCGC	1 cut(s)	247
Hin1II	CATG	1 cut(s)	75
Hin6I	GCGC	1 cut(s)	245
HinP1I	GCGC	1 cut(s)	245
HincII	GTYRAC	2 cut(s)	6, 454
HindII	GTYRAC	2 cut(s)	6, 454
HinfI	GANTC	2 cut(s)	124, 262
HpaI	GTTAAC	1 cut(s)	6
HpaII	CCGG	1 cut(s)	65
Hpy166II	GTNNAC	2 cut(s)	6, 454
Hpy188I	TCNGA	3 cut(s)	237, 337, 377
Hpy188III	TCNNGA	2 cut(s)	139, 266
Hpy8I	GTNNAC	2 cut(s)	6, 454
HpyCH4III	ACNGT	2 cut(s)	296, 330
HpyCH4IV	ACGT	1 cut(s)	450
HpyCH4V	TGCA	4 cut(s)	26, 53, 133, 464
HpyF10VI	GCNNNNNNNGC	1 cut(s)	398
HpyF3I	CTNAG	1 cut(s)	93
HpySE526I	ACGT	1 cut(s)	450
Hsp92II	CATG	1 cut(s)	75
HspAI	GCGC	1 cut(s)	245
KspAI	GTTAAC	1 cut(s)	6
Lsp1109I	GCAGC	2 cut(s)	100, 187
LweI	GCATC	1 cut(s)	79
MaeII	ACGT	1 cut(s)	450
MaeIII	GTNAC	2 cut(s)	148, 274
MboII	GAAGA	3 cut(s)	281, 293, 364
MluCI	AATT	6 cut(s)	98, 201, 228, 359, 396, 415
MmeI	TCCRAC	1 cut(s)	465
MnlI	CCTC	6 cut(s)	30, 181, 231, 265, 307, 403
MseI	TTAA	3 cut(s)	5, 101, 194
MslI	CAYNNNNRTG	2 cut(s)	35, 183
MspA1I	CMGCKG	2 cut(s)	113, 392
MspI	CCGG	1 cut(s)	65
MspR9I	CCNGG	2 cut(s)	305, 381
MvaI	CCWGG	2 cut(s)	305, 381
MwoI	GCNNNNNNNGC	1 cut(s)	398
NdeI	CATATG	1 cut(s)	10
NlaIII	CATG	1 cut(s)	75
NlaIV	GGNNCC	1 cut(s)	69
NmuCI	GTSAC	1 cut(s)	274
PfeI	GAWTC	2 cut(s)	124, 262
PkrI	GCNGC	2 cut(s)	115, 177
Psp6I	CCWGG	2 cut(s)	303, 379
PspGI	CCWGG	2 cut(s)	303, 379
PspN4I	GGNNCC	1 cut(s)	69
PspPI	GGNCC	1 cut(s)	377
PvuII	CAGCTG	2 cut(s)	113, 392
RseI	CAYNNNNRTG	2 cut(s)	35, 183
SaqAI	TTAA	3 cut(s)	5, 101, 194
SatI	GCNGC	2 cut(s)	114, 176
Sau96I	GGNCC	1 cut(s)	377
ScrFI	CCNGG	2 cut(s)	305, 381
SetI	ASST	5 cut(s)	115, 138, 276, 394, 453
SfaNI	GCATC	1 cut(s)	79
SfcI	CTRYAG	1 cut(s)	326
SinI	GGWCC	1 cut(s)	377
SmiMI	CAYNNNNRTG	2 cut(s)	35, 183
Sse9I	AATT	6 cut(s)	98, 201, 228, 359, 396, 415
SsiI	CCGC	1 cut(s)	160
StyD4I	CCNGG	2 cut(s)	303, 379
StyI	CCWWGG	1 cut(s)	402
TaaI	ACNGT	2 cut(s)	296, 330
TaiI	ACGT	1 cut(s)	453
TasI	AATT	6 cut(s)	98, 201, 228, 359, 396, 415
TfiI	GAWTC	2 cut(s)	124, 262
Tru1I	TTAA	3 cut(s)	5, 101, 194
Tru9I	TTAA	3 cut(s)	5, 101, 194
TscAI	CASTG	1 cut(s)	466
TseFI	GTSAC	1 cut(s)	274
TseI	GCWGC	2 cut(s)	113, 175
Tsp45I	GTSAC	1 cut(s)	274
TspDTI	ATGAA	1 cut(s)	438
TspRI	CASTG	1 cut(s)	466
VpaK11BI	GGWCC	1 cut(s)	377
XapI	RAATTY	3 cut(s)	201, 359, 415

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.