Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0009598

Physical Location & Seq

Genomic Coordinates Forward (+)

23377902 .. 23381163

Gene Structure 3262 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G239600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGGCAACCAAAGCACTATCAACTGTAACTGCAAGTTCAAAAGGAATCTTCCTCTGCCCCCACCAATATCACGAATTCAACCGCCACCGCTTTCTCTCTCTGCAACACCACCACCACCACCACCACCACCATAACACTAGCTCATCAAAACCAAGGCCCATCACCAGCTTCCTCGTCCATCTGGAGCCCATTGGGCCTAGGGCACACCAACACTCAAAGCCCAAGCCCAAATTGACCAGAGCACGAGCCGCCGATTCAACCCAGCCTACCACCGTCTCCTCCACCGCCGACAAGACCGTCGTTCCTGACGACCAGTTCTCCCTCGCTAAGGTTTCGTTTGGGGTTATTGGTCTGGGTGGTGGGCTTTCACTCTTGTCGTATGGTTTTGGGGCGTATTTTAATATCCTTCCTGGGTCTGAATGGTCAGCATTGATGCTCACATATGGCTTCCCACTTGCAATCATTGGTATGGCTTTCAAGTATGCAGAGCTAAAGCCAGTACCATGCTTGACTTATTCGGATGCTCTGAAATTAAGGGAAACAAGTGCCACCCCAATCCTTACGCAGGTCAGGAATGATGTTACGAGGTATCGCTATGGAGATGAGCAGCATTTGGATGAGGCATTGAAACGAATTTTCCAGTATGGTCAGGGTGGGGGAATTGCTCGGAGGAGTGCACCTACTCTCCAAAGCATTCGCGAAGAGGTCACAGAAGATGGTAGATACTCTCTAGTCCTGGTATTTGAGGCAAAAGCTCTGCAGTTATCAGATTTTGAACAAAGACAGGCTAAATTTGCGTCATTCTTCGGACCAGGAATCACAGCTGAAATCGTGAAGGGAGAGAAGAATCTATATGAAGTCCGACTCATTTCTAACTCCAACGTTGACCCCTCTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2854

Protein Analysis

300

Amino Acids

33.17

Weight (kDa)

9.32

Isoelectric Point (pI)

30.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009598)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G38660 AT5G38660
fragaria_vesca	FvH4_6g45340 FvH4_6g45340 FvH4_6g45340
malus_domestica	MD09G1084900.v1.1 MD17G1074400.v1.1
prunus_persica	Prupe.3G239600_v2.0.a1
pyrus_communis	pycom09g01050 pycom17g07500
rosa_chinensis	RchiOBHm_Chr2g0163121
rosa_laevigata	RLG00000021375
rosa_multiflora	Rmu_sc0002045.1_g000041 Rmu_sc0002045.1_g000043 Rmu_sc0003984.1_g000019
rosa_roxburghii	Rroxscaffold_2G00087530
rosa_rugosa	Rorug02G0500700 Rorug02G0500700
rosa_samantha	Rh2BG579300 Rh2CG549200 Rh2DG589600
rosa_wichuraiana	Rw2G046950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	296
Acc36I	ACCTGC	1 cut(s)	556
AccII	CGCG	1 cut(s)	699
AciI	CCGC	4 cut(s)	82, 88, 249, 285
AclI	AACGTT	1 cut(s)	882
AcsI	RAATTY	3 cut(s)	74, 633, 791
AfaI	GTAC	1 cut(s)	501
AfiI	CCNNNNNNNGG	2 cut(s)	328, 565
AgsI	TTSAA	6 cut(s)	39, 79, 258, 478, 628, 776
AjnI	CCWGG	3 cut(s)	409, 735, 811
AluBI	AGCT	5 cut(s)	141, 168, 490, 755, 824
AluI	AGCT	5 cut(s)	141, 168, 490, 755, 824
Alw21I	GWGCWC	2 cut(s)	244, 679
Alw26I	GTCTC	1 cut(s)	280
Alw44I	GTGCAC	1 cut(s)	675
AoxI	GGCC	2 cut(s)	155, 194
ApaLI	GTGCAC	1 cut(s)	675
ApeKI	GCWGC	1 cut(s)	607
ApoI	RAATTY	3 cut(s)	74, 633, 791
AspA2I	CCTAGG	1 cut(s)	197
AspS9I	GGNCC	3 cut(s)	156, 194, 809
AsuHPI	GGTGA	1 cut(s)	154
AvaII	GGWCC	1 cut(s)	809
AvrII	CCTAGG	1 cut(s)	197
BaeGI	GKGCMC	2 cut(s)	205, 679
BanII	GRGCYC	1 cut(s)	189
BauI	CACGAG	1 cut(s)	243
Bbv12I	GWGCWC	2 cut(s)	244, 679
BbvI	GCAGC	1 cut(s)	619
BccI	CCATC	3 cut(s)	167, 186, 710
BciT130I	CCWGG	3 cut(s)	411, 737, 813
BcoDI	GTCTC	1 cut(s)	280
BfaI	CTAG	3 cut(s)	138, 198, 731
BfmI	CTRYAG	1 cut(s)	758
BfuAI	ACCTGC	1 cut(s)	556
BglI	GCCNNNNNGGC	1 cut(s)	193
BisI	GCNGC	2 cut(s)	249, 608
BlnI	CCTAGG	1 cut(s)	197
BlsI	GCNGC	2 cut(s)	250, 609
Bme1390I	CCNGG	3 cut(s)	411, 737, 813
Bme18I	GGWCC	1 cut(s)	809
BmgT120I	GGNCC	3 cut(s)	156, 194, 809
BmiI	GGNNCC	1 cut(s)	186
BmrFI	CCNGG	3 cut(s)	411, 737, 813
BmsI	GCATC	2 cut(s)	423, 511
BpmI	CTGGAG	1 cut(s)	203
Bpu10I	CCTNAGC	1 cut(s)	327
BsaJI	CCNNGG	3 cut(s)	152, 197, 410
BsaXI	ACNNNNNCTCC	4 cut(s)	302, 332, 669, 699
Bsc4I	CCNNNNNNNGG	2 cut(s)	328, 565
Bse1I	ACTGG	3 cut(s)	313, 497, 640
BseBI	CCWGG	3 cut(s)	411, 737, 813
BseDI	CCNNGG	3 cut(s)	152, 197, 410
BseGI	GGATG	2 cut(s)	526, 622
BseLI	CCNNNNNNNGG	2 cut(s)	328, 565
BseNI	ACTGG	3 cut(s)	313, 497, 640
BseRI	GAGGAG	2 cut(s)	268, 685
BseSI	GKGCMC	2 cut(s)	205, 679
BseXI	GCAGC	1 cut(s)	619
BseYI	CCCAGC	1 cut(s)	261
Bsh1236I	CGCG	1 cut(s)	699
BshFI	GGCC	2 cut(s)	157, 196
BsiHKAI	GWGCWC	2 cut(s)	244, 679
BslI	CCNNNNNNNGG	2 cut(s)	328, 565
BsmAI	GTCTC	1 cut(s)	280
BsmBI	CGTCTC	1 cut(s)	280
BsmI	GAATGC	1 cut(s)	693
BsnI	GGCC	2 cut(s)	157, 196
Bsp1286I	GDGCHC	4 cut(s)	189, 205, 244, 679
Bsp68I	TCGCGA	1 cut(s)	699
BspACI	CCGC	4 cut(s)	82, 88, 249, 285
BspANI	GGCC	2 cut(s)	157, 196
BspFNI	CGCG	1 cut(s)	699
BspLI	GGNNCC	1 cut(s)	186
BspMAI	CTGCAG	1 cut(s)	762
BspMI	ACCTGC	1 cut(s)	556
BsrI	ACTGG	3 cut(s)	313, 497, 640
BssECI	CCNNGG	3 cut(s)	152, 197, 410
BssSI	CACGAG	1 cut(s)	243
BssT1I	CCWWGG	2 cut(s)	152, 197
Bst2BI	CACGAG	1 cut(s)	243
Bst2UI	CCWGG	3 cut(s)	411, 737, 813
Bst4CI	ACNGT	3 cut(s)	25, 274, 298
Bst6I	CTCTTC	1 cut(s)	696
BstDEI	CTNAG	1 cut(s)	327
BstENI	CCTNNNNNAGG	2 cut(s)	326, 563
BstF5I	GGATG	2 cut(s)	526, 622
BstFNI	CGCG	1 cut(s)	699
BstMAI	GTCTC	1 cut(s)	280
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 193, 248, 794
BstNI	CCWGG	3 cut(s)	411, 737, 813
BstSCI	CCNGG	3 cut(s)	409, 735, 811
BstSFI	CTRYAG	1 cut(s)	758
BstSLI	GKGCMC	2 cut(s)	205, 679
BstUI	CGCG	1 cut(s)	699
BstV1I	GCAGC	1 cut(s)	619
BsuRI	GGCC	2 cut(s)	157, 196
BtsCI	GGATG	2 cut(s)	526, 622
BtuMI	TCGCGA	1 cut(s)	699
BveI	ACCTGC	1 cut(s)	556
Cfr13I	GGNCC	3 cut(s)	156, 194, 809
CseI	GACGC	1 cut(s)	786
Csp6I	GTAC	1 cut(s)	500
CviAII	CATG	1 cut(s)	504
CviQI	GTAC	1 cut(s)	500
DdeI	CTNAG	1 cut(s)	327
DrdI	GACNNNNNNGTC	1 cut(s)	296
DseDI	GACNNNNNNGTC	1 cut(s)	296
Eam1104I	CTCTTC	1 cut(s)	696
EarI	CTCTTC	1 cut(s)	696
Eco130I	CCWWGG	2 cut(s)	152, 197
Eco24I	GRGCYC	1 cut(s)	189
Eco47I	GGWCC	1 cut(s)	809
EcoNI	CCTNNNNNAGG	2 cut(s)	326, 563
EcoRI	GAATTC	1 cut(s)	74
EcoRII	CCWGG	3 cut(s)	409, 735, 811
EcoT14I	CCWWGG	2 cut(s)	152, 197
EcoT38I	GRGCYC	1 cut(s)	189
ErhI	CCWWGG	2 cut(s)	152, 197
Esp3I	CGTCTC	1 cut(s)	280
FaeI	CATG	1 cut(s)	507
FatI	CATG	1 cut(s)	503
FauNDI	CATATG	1 cut(s)	442
Fnu4HI	GCNGC	2 cut(s)	249, 608
FokI	GGATG	2 cut(s)	533, 629
FriOI	GRGCYC	1 cut(s)	189
Fsp4HI	GCNGC	2 cut(s)	249, 608
FspBI	CTAG	3 cut(s)	138, 198, 731
GluI	GCNGC	2 cut(s)	249, 608
GsaI	CCCAGC	1 cut(s)	265
GsuI	CTGGAG	1 cut(s)	203
HaeIII	GGCC	2 cut(s)	157, 196
HgaI	GACGC	1 cut(s)	786
Hin1II	CATG	1 cut(s)	507
HincII	GTYRAC	1 cut(s)	886
HindII	GTYRAC	1 cut(s)	886
HinfI	GANTC	5 cut(s)	45, 254, 816, 847, 864
HphI	GGTGA	1 cut(s)	154
Hpy166II	GTNNAC	2 cut(s)	677, 886
Hpy188I	TCNGA	7 cut(s)	418, 520, 528, 669, 769, 809, 863
Hpy188III	TCNNGA	6 cut(s)	71, 182, 305, 571, 698, 832
Hpy8I	GTNNAC	2 cut(s)	677, 886
Hpy99I	CGWCG	1 cut(s)	302
HpyAV	CCTTC	2 cut(s)	416, 829
HpyCH4III	ACNGT	3 cut(s)	25, 274, 298
HpyCH4IV	ACGT	1 cut(s)	882
HpyCH4V	TGCA	7 cut(s)	32, 103, 458, 485, 677, 760, 896
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 193, 248, 794
HpyF3I	CTNAG	1 cut(s)	327
HpySE526I	ACGT	1 cut(s)	882
Hsp92II	CATG	1 cut(s)	507
LmnI	GCTCC	1 cut(s)	184
Lsp1109I	GCAGC	1 cut(s)	619
LweI	GCATC	2 cut(s)	423, 511
MaeI	CTAG	3 cut(s)	138, 198, 731
MaeII	ACGT	1 cut(s)	882
MaeIII	GTNAC	3 cut(s)	25, 580, 706
MboII	GAAGA	5 cut(s)	40, 713, 725, 796, 856
MhlI	GDGCHC	4 cut(s)	189, 205, 244, 679
MluCI	AATT	6 cut(s)	74, 230, 530, 633, 660, 791
MlyI	GAGTC	1 cut(s)	858
MmeI	TCCRAC	1 cut(s)	886
MnlI	CCTC	9 cut(s)	62, 182, 289, 332, 579, 613, 663, 697, 739
MseI	TTAA	2 cut(s)	399, 533
MslI	CAYNNNNRTG	2 cut(s)	467, 615
MspA1I	CMGCKG	1 cut(s)	824
MspR9I	CCNGG	3 cut(s)	411, 737, 813
Mva1269I	GAATGC	1 cut(s)	693
MvaI	CCWGG	3 cut(s)	411, 737, 813
MvnI	CGCG	1 cut(s)	699
MwoI	GCNNNNNNNGC	4 cut(s)	11, 193, 248, 794
NdeI	CATATG	1 cut(s)	442
NlaIII	CATG	1 cut(s)	507
NlaIV	GGNNCC	1 cut(s)	186
NmuCI	GTSAC	1 cut(s)	706
NruI	TCGCGA	1 cut(s)	699
PcsI	WCGNNNNNNNCGW	1 cut(s)	306
PctI	GAATGC	1 cut(s)	693
PfeI	GAWTC	4 cut(s)	45, 254, 816, 847
PkrI	GCNGC	2 cut(s)	250, 609
PleI	GAGTC	1 cut(s)	858
PpsI	GAGTC	1 cut(s)	858
Psp1406I	AACGTT	1 cut(s)	882
Psp6I	CCWGG	3 cut(s)	409, 735, 811
PspFI	CCCAGC	1 cut(s)	261
PspGI	CCWGG	3 cut(s)	409, 735, 811
PspN4I	GGNNCC	1 cut(s)	186
PspPI	GGNCC	3 cut(s)	156, 194, 809
PstI	CTGCAG	1 cut(s)	762
PvuII	CAGCTG	1 cut(s)	824
RruI	TCGCGA	1 cut(s)	699
RsaI	GTAC	1 cut(s)	501
RsaNI	GTAC	1 cut(s)	500
RseI	CAYNNNNRTG	2 cut(s)	467, 615
SaqAI	TTAA	2 cut(s)	399, 533
SatI	GCNGC	2 cut(s)	249, 608
Sau96I	GGNCC	3 cut(s)	156, 194, 809
SchI	GAGTC	1 cut(s)	858
ScrFI	CCNGG	3 cut(s)	411, 737, 813
SduI	GDGCHC	4 cut(s)	189, 205, 244, 679
SfaNI	GCATC	2 cut(s)	423, 511
SfcI	CTRYAG	1 cut(s)	758
SinI	GGWCC	1 cut(s)	809
SmiMI	CAYNNNNRTG	2 cut(s)	467, 615
Sse9I	AATT	6 cut(s)	74, 230, 530, 633, 660, 791
SsiI	CCGC	4 cut(s)	82, 88, 249, 285
SspMI	CTAG	3 cut(s)	138, 198, 731
StyD4I	CCNGG	3 cut(s)	409, 735, 811
StyI	CCWWGG	2 cut(s)	152, 197
TaaI	ACNGT	3 cut(s)	25, 274, 298
TaiI	ACGT	1 cut(s)	885
TasI	AATT	6 cut(s)	74, 230, 530, 633, 660, 791
TauI	GCSGC	1 cut(s)	251
TfiI	GAWTC	4 cut(s)	45, 254, 816, 847
Tru1I	TTAA	2 cut(s)	399, 533
Tru9I	TTAA	2 cut(s)	399, 533
TseFI	GTSAC	1 cut(s)	706
TseI	GCWGC	1 cut(s)	607
Tsp45I	GTSAC	1 cut(s)	706
TspDTI	ATGAA	1 cut(s)	870
VneI	GTGCAC	1 cut(s)	675
VpaK11BI	GGWCC	1 cut(s)	809
XagI	CCTNNNNNAGG	2 cut(s)	326, 563
XapI	RAATTY	3 cut(s)	74, 633, 791
XmaJI	CCTAGG	1 cut(s)	197
XspI	CTAG	3 cut(s)	138, 198, 731

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.