Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0009598

Physical Location & Seq

Genomic Coordinates Forward (+)

63322831 .. 63327630

Gene Structure 4800 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0500700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1254 bp

ATGGGTTACATATGTGATTTCTGTGGGGATCAAAGGTCCATGGTGTATTGCCGGTCTGATGCTGCTTGCTTATGTTTATCATGTGACCGAAATGTCCACTCTGCTAATGCCTTGTCGAGGCGTCACTCGAGAACGCTTCTTTGCGAAAGATGCAATTCACAACCAGCATTAGTAAGATGTGCAGAAGAGAGAGTGTCTCTTTGTCAGAATTGTGATTGGATGGGTCATGGTGCATCTACTTCAGCTGCATCACACAAGAGGCAAACACTCAATTGTTACTCTGGCTGCCCATCAGCTTCTGAACTGTCGTCTATCTGGTCATTCGTTCTAGAGTTACCTTCCGCAGCCGCGGGTGAATCTGCTTGTGAGCAGGAAATGGGGTTGATGAGCATTGCCGAGAACAGCACTGGAAGTGCTTGGAGCCCCCCAGAAAATAACACCAGAGAGAATGCATCTGATAAATTTGAAGTCAGTGACGTGGGTGCCATGGATAAGTCTGATGGTTTAGTTGGTTCCTCTTCGGTGCCTGCACTTAACTCAGCTCCTCAGGTTGTTGGTCAGATGCCTGGATCTGCAAATTCTACATTGCCCAAGTTATATTGTCACGGAACCAAAAGCCCAGGGCTCTGTGAAGATGATGACCTTTATGACGATTTTGATATGGATGAAATGGATCTGAATCTTGAAAATTATGACGAACTATTTGGTGTATCTCTCAATCACTCTGAAGAGCTTTTCAATAATGGTGGGATTGATAGTTTGTTTGGGGCAAAGAACATGTCCAGGGCTCAGGAATTAATTGCTGCTGAGGGGTCATCAATTGGACGGGTAAATGCATTGCAGCAGCCAGCATGCAGTACTGCAGCATCTGCGGATTCTTTAATGAGTACAAAAACTGAACCAATTGTTTCTTTTGTGCCAAAGCAAGCACAGTCAAACCTTTCATTTTCGGGTGTCACCGGCGAGAGTAGTGCTGGAGATTGTCAAGATTGTGGGGCTTCCTCAATGCTACTCATGGGAGAGCCTCCATGGTGTCCTCCAGGCCCTGAGAGTTCCTTCCAGTCTGCTAATCGAAGTAATGCTGTTATGCGTTACAAGGAAAAGAAGAAGGCACGCAAGTTTGAGAAAAGAGTGAGGTATGCTTCTCGCAAAGCAAGGGCAGATGTAAGAAAGCGTGTGAAAGGGCGGTTTATTAAAGCTGGCGAAGCTTATGATTATGACCCTTTGAATGCGGCCAGAACCAGAAGCTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2854 UMP1

Protein Analysis

417

Amino Acids

45.05

Weight (kDa)

5.36

Isoelectric Point (pI)

56.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ANCHR-like_BBOX	PF22586	47 - 86	5.7e-06	ANCHR-like B-box zinc-binding domain
CCT	PF06203	358 - 400	5.9e-16	CCT motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009598)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G38660 AT5G38660
fragaria_vesca	FvH4_6g45340 FvH4_6g45340 FvH4_6g45340
malus_domestica	MD09G1084900.v1.1 MD17G1074400.v1.1
prunus_persica	Prupe.3G239600_v2.0.a1
pyrus_communis	pycom09g01050 pycom17g07500
rosa_chinensis	RchiOBHm_Chr2g0163121
rosa_laevigata	RLG00000021375
rosa_multiflora	Rmu_sc0002045.1_g000041 Rmu_sc0002045.1_g000043 Rmu_sc0003984.1_g000019
rosa_roxburghii	Rroxscaffold_2G00087530
rosa_rugosa	Rorug02G0500700 Rorug02G0500700
rosa_samantha	Rh2BG579300 Rh2CG549200 Rh2DG589600
rosa_wichuraiana	Rw2G046950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	92
AccB1I	GGYRCC	2 cut(s)	482, 523
AccII	CGCG	1 cut(s)	350
AciI	CCGC	6 cut(s)	342, 348, 350, 872, 1186, 1232
AclWI	GGATC	3 cut(s)	36, 577, 681
AcoI	YGGCCR	1 cut(s)	1233
AcsI	RAATTY	2 cut(s)	461, 577
AcuI	CTGAAG	2 cut(s)	225, 747
AcyI	GRCGYC	1 cut(s)	121
AfaI	GTAC	2 cut(s)	859, 889
AfiI	CCNNNNNNNGG	1 cut(s)	117
AflIII	ACRYGT	1 cut(s)	777
AgsI	TTSAA	4 cut(s)	467, 686, 739, 1228
AjiI	CACGTC	1 cut(s)	478
AjnI	CCWGG	4 cut(s)	565, 619, 782, 1039
AluBI	AGCT	7 cut(s)	245, 296, 542, 733, 1199, 1208, 1248
AluI	AGCT	7 cut(s)	245, 296, 542, 733, 1199, 1208, 1248
Alw26I	GTCTC	1 cut(s)	201
AlwI	GGATC	3 cut(s)	36, 577, 681
AlwNI	CAGNNNCTG	3 cut(s)	299, 869, 1046
Ama87I	CYCGRG	1 cut(s)	127
AoxI	GGCC	2 cut(s)	1042, 1233
ApeKI	GCWGC	8 cut(s)	62, 245, 285, 344, 803, 841, 844, 863
ApoI	RAATTY	2 cut(s)	461, 577
ArsI	GACNNNNNNTTYG	4 cut(s)	686, 718, 764, 796
AseI	ATTAAT	1 cut(s)	797
AspS9I	GGNCC	2 cut(s)	36, 1043
AsuHPI	GGTGA	2 cut(s)	365, 949
AvaI	CYCGRG	1 cut(s)	127
AvaII	GGWCC	1 cut(s)	36
AxyI	CCTNAGG	1 cut(s)	546
BanI	GGYRCC	2 cut(s)	482, 523
BanII	GRGCYC	3 cut(s)	425, 627, 790
BbvCI	CCTCAGC	1 cut(s)	807
BbvI	GCAGC	8 cut(s)	49, 232, 272, 356, 790, 853, 856, 875
BccI	CCATC	3 cut(s)	214, 298, 494
BcgI	CGANNNNNNTGC	2 cut(s)	953, 987
BciT130I	CCWGG	4 cut(s)	567, 621, 784, 1041
BcoDI	GTCTC	1 cut(s)	201
BfaI	CTAG	1 cut(s)	329
BfmI	CTRYAG	1 cut(s)	861
BmcAI	AGTACT	1 cut(s)	859
Bme1390I	CCNGG	4 cut(s)	567, 621, 784, 1041
Bme18I	GGWCC	1 cut(s)	36
BmeT110I	CYCGRG	1 cut(s)	127
BmgBI	CACGTC	1 cut(s)	478
BmgT120I	GGNCC	2 cut(s)	36, 1043
BmiI	GGNNCC	5 cut(s)	422, 484, 514, 525, 610
BmrFI	CCNGG	4 cut(s)	567, 621, 784, 1041
BmsI	GCATC	7 cut(s)	49, 140, 242, 257, 461, 552, 875
BplI	GAGNNNNNCTC	2 cut(s)	181, 213
BpmI	CTGGAG	2 cut(s)	996, 1023
Bpu10I	CCTNAGC	2 cut(s)	789, 807
BsaBI	GATNNNNATC	1 cut(s)	678
BsaHI	GRCGYC	1 cut(s)	121
BsaJI	CCNNGG	7 cut(s)	39, 348, 486, 619, 620, 783, 1028
Bsc4I	CCNNNNNNNGG	1 cut(s)	117
Bse118I	RCCGGY	2 cut(s)	51, 959
Bse1I	ACTGG	2 cut(s)	412, 1060
Bse21I	CCTNAGG	1 cut(s)	546
Bse3DI	GCAATG	3 cut(s)	390, 584, 836
Bse8I	GATNNNNATC	1 cut(s)	678
BseBI	CCWGG	4 cut(s)	567, 621, 784, 1041
BseDI	CCNNGG	7 cut(s)	39, 348, 486, 619, 620, 783, 1028
BseGI	GGATG	2 cut(s)	225, 670
BseJI	GATNNNNATC	1 cut(s)	678
BseLI	CCNNNNNNNGG	1 cut(s)	117
BseMI	GCAATG	3 cut(s)	390, 584, 836
BseMII	CTCAG	5 cut(s)	552, 560, 798, 803, 1038
BseNI	ACTGG	2 cut(s)	412, 1060
BseRI	GAGGAG	1 cut(s)	534
BseXI	GCAGC	8 cut(s)	49, 232, 272, 356, 790, 853, 856, 875
BsgI	GTGCAG	2 cut(s)	201, 513
Bsh1236I	CGCG	1 cut(s)	350
BshFI	GGCC	2 cut(s)	1044, 1235
BshNI	GGYRCC	2 cut(s)	482, 523
BsiHKCI	CYCGRG	1 cut(s)	127
BsiSI	CCGG	2 cut(s)	52, 960
BslI	CCNNNNNNNGG	1 cut(s)	117
BsmAI	GTCTC	1 cut(s)	201
BsmI	GAATGC	2 cut(s)	454, 1234
BsnI	GGCC	2 cut(s)	1044, 1235
BsoBI	CYCGRG	1 cut(s)	127
Bsp1286I	GDGCHC	3 cut(s)	425, 627, 790
Bsp143I	GATC	3 cut(s)	28, 569, 673
Bsp19I	CCATGG	3 cut(s)	39, 486, 1028
BspACI	CCGC	6 cut(s)	342, 348, 350, 872, 1186, 1232
BspANI	GGCC	2 cut(s)	1044, 1235
BspCNI	CTCAG	5 cut(s)	551, 559, 799, 802, 1039
BspFNI	CGCG	1 cut(s)	350
BspLI	GGNNCC	5 cut(s)	422, 484, 514, 525, 610
BspMAI	CTGCAG	1 cut(s)	865
BspPI	GGATC	3 cut(s)	36, 577, 681
BspQI	GCTCTTC	1 cut(s)	723
BspT107I	GGYRCC	2 cut(s)	482, 523
BsrDI	GCAATG	3 cut(s)	390, 584, 836
BsrFI	RCCGGY	2 cut(s)	51, 959
BsrI	ACTGG	2 cut(s)	412, 1060
BssAI	RCCGGY	2 cut(s)	51, 959
BssECI	CCNNGG	7 cut(s)	39, 348, 486, 619, 620, 783, 1028
BssMI	GATC	3 cut(s)	28, 569, 673
BssNI	GRCGYC	1 cut(s)	121
BssT1I	CCWWGG	3 cut(s)	39, 486, 1028
Bst2UI	CCWGG	4 cut(s)	567, 621, 784, 1041
Bst4CI	ACNGT	2 cut(s)	306, 933
Bst6I	CTCTTC	3 cut(s)	180, 523, 723
BstACI	GRCGYC	1 cut(s)	121
BstAPI	GCANNNNNTGC	1 cut(s)	869
BstC8I	GCNNGC	7 cut(s)	67, 528, 849, 853, 927, 1114, 1201
BstDEI	CTNAG	5 cut(s)	538, 546, 789, 807, 1047
BstDSI	CCRYGG	4 cut(s)	39, 348, 486, 1028
BstENI	CCTNNNNNAGG	1 cut(s)	115
BstF5I	GGATG	2 cut(s)	225, 670
BstFNI	CGCG	1 cut(s)	350
BstKTI	GATC	3 cut(s)	31, 572, 676
BstMAI	GTCTC	1 cut(s)	201
BstMBI	GATC	3 cut(s)	28, 569, 673
BstMWI	GCNNNNNNNGC	3 cut(s)	150, 869, 1205
BstNI	CCWGG	4 cut(s)	567, 621, 784, 1041
BstNSI	RCATGY	2 cut(s)	781, 855
BstSCI	CCNGG	4 cut(s)	565, 619, 782, 1039
BstSFI	CTRYAG	1 cut(s)	861
BstUI	CGCG	1 cut(s)	350
BstV1I	GCAGC	8 cut(s)	49, 232, 272, 356, 790, 853, 856, 875
BstX2I	RGATCY	2 cut(s)	569, 673
BstYI	RGATCY	2 cut(s)	569, 673
Bsu36I	CCTNAGG	1 cut(s)	546
BsuRI	GGCC	2 cut(s)	1044, 1235
BtgI	CCRYGG	4 cut(s)	39, 348, 486, 1028
BtrI	CACGTC	1 cut(s)	478
BtsCI	GGATG	2 cut(s)	225, 670
BtsIMutI	CAGTG	2 cut(s)	405, 478
Cac8I	GCNNGC	7 cut(s)	67, 528, 849, 853, 927, 1114, 1201
CaiI	CAGNNNCTG	3 cut(s)	299, 869, 1046
Cfr10I	RCCGGY	2 cut(s)	51, 959
Cfr13I	GGNCC	2 cut(s)	36, 1043
Cfr42I	CCGCGG	1 cut(s)	351
CseI	GACGC	1 cut(s)	110
Csp6I	GTAC	2 cut(s)	858, 888
CspCI	CAANNNNNGTGG	2 cut(s)	727, 762
CviAII	CATG	8 cut(s)	40, 81, 227, 487, 778, 852, 1015, 1029
CviQI	GTAC	2 cut(s)	858, 888
DdeI	CTNAG	5 cut(s)	538, 546, 789, 807, 1047
DpnI	GATC	3 cut(s)	30, 571, 675
DpnII	GATC	3 cut(s)	28, 569, 673
DrdI	GACNNNNNNGTC	1 cut(s)	92
DseDI	GACNNNNNNGTC	1 cut(s)	92
EaeI	YGGCCR	1 cut(s)	1233
Eam1104I	CTCTTC	3 cut(s)	180, 523, 723
EarI	CTCTTC	3 cut(s)	180, 523, 723
Eco130I	CCWWGG	3 cut(s)	39, 486, 1028
Eco24I	GRGCYC	3 cut(s)	425, 627, 790
Eco47I	GGWCC	1 cut(s)	36
Eco57I	CTGAAG	2 cut(s)	225, 747
Eco81I	CCTNAGG	1 cut(s)	546
Eco88I	CYCGRG	1 cut(s)	127
EcoNI	CCTNNNNNAGG	1 cut(s)	115
EcoO109I	RGGNCCY	1 cut(s)	1043
EcoRII	CCWGG	4 cut(s)	565, 619, 782, 1039
EcoT14I	CCWWGG	3 cut(s)	39, 486, 1028
EcoT22I	ATGCAT	2 cut(s)	454, 838
EcoT38I	GRGCYC	3 cut(s)	425, 627, 790
ErhI	CCWWGG	3 cut(s)	39, 486, 1028
FaeI	CATG	8 cut(s)	43, 84, 230, 490, 781, 855, 1018, 1032
FatI	CATG	8 cut(s)	39, 80, 226, 486, 777, 851, 1014, 1028
FauI	CCCGC	1 cut(s)	343
FauNDI	CATATG	1 cut(s)	11
FokI	GGATG	2 cut(s)	232, 677
FriOI	GRGCYC	3 cut(s)	425, 627, 790
FspBI	CTAG	1 cut(s)	329
GsuI	CTGGAG	2 cut(s)	996, 1023
HaeIII	GGCC	2 cut(s)	1044, 1235
HapII	CCGG	2 cut(s)	52, 960
HgaI	GACGC	1 cut(s)	110
Hin1I	GRCGYC	1 cut(s)	121
Hin1II	CATG	8 cut(s)	43, 84, 230, 490, 781, 855, 1018, 1032
HindIII	AAGCTT	1 cut(s)	1206
HinfI	GANTC	3 cut(s)	356, 679, 875
HpaII	CCGG	2 cut(s)	52, 960
HphI	GGTGA	2 cut(s)	365, 949
Hpy166II	GTNNAC	1 cut(s)	97
Hpy188I	TCNGA	8 cut(s)	58, 207, 301, 457, 499, 561, 678, 727
Hpy188III	TCNNGA	5 cut(s)	129, 329, 683, 791, 986
Hpy8I	GTNNAC	1 cut(s)	97
HpyAV	CCTTC	3 cut(s)	348, 1066, 1102
HpyCH4III	ACNGT	2 cut(s)	306, 933
HpyCH4IV	ACGT	1 cut(s)	477
HpyF10VI	GCNNNNNNNGC	3 cut(s)	150, 869, 1205
HpyF3I	CTNAG	5 cut(s)	538, 546, 789, 807, 1047
HpySE526I	ACGT	1 cut(s)	477
Hsp92I	GRCGYC	1 cut(s)	121
Hsp92II	CATG	8 cut(s)	43, 84, 230, 490, 781, 855, 1018, 1032
KspI	CCGCGG	1 cut(s)	351
Kzo9I	GATC	3 cut(s)	28, 569, 673
LguI	GCTCTTC	1 cut(s)	723
LmnI	GCTCC	2 cut(s)	420, 547
Lsp1109I	GCAGC	8 cut(s)	49, 232, 272, 356, 790, 853, 856, 875
LweI	GCATC	7 cut(s)	49, 140, 242, 257, 461, 552, 875
MaeI	CTAG	1 cut(s)	329
MaeII	ACGT	1 cut(s)	477
MaeIII	GTNAC	9 cut(s)	5, 83, 122, 275, 333, 473, 602, 955, 1091
MalI	GATC	3 cut(s)	30, 571, 675
MboI	GATC	3 cut(s)	28, 569, 673
MboII	GAAGA	5 cut(s)	197, 510, 644, 740, 1117
MfeI	CAATTG	3 cut(s)	271, 819, 903
MflI	RGATCY	2 cut(s)	569, 673
MhlI	GDGCHC	3 cut(s)	425, 627, 790
MnlI	CCTC	9 cut(s)	111, 252, 526, 555, 802, 1012, 1035, 1047, 1128
Mph1103I	ATGCAT	2 cut(s)	454, 838
MseI	TTAA	4 cut(s)	534, 797, 881, 1194
MspA1I	CMGCKG	2 cut(s)	245, 350
MspI	CCGG	2 cut(s)	52, 960
MspR9I	CCNGG	4 cut(s)	567, 621, 784, 1041
MunI	CAATTG	3 cut(s)	271, 819, 903
Mva1269I	GAATGC	2 cut(s)	454, 1234
MvaI	CCWGG	4 cut(s)	567, 621, 784, 1041
MvnI	CGCG	1 cut(s)	350
MwoI	GCNNNNNNNGC	3 cut(s)	150, 869, 1205
NcoI	CCATGG	3 cut(s)	39, 486, 1028
NdeI	CATATG	1 cut(s)	11
NdeII	GATC	3 cut(s)	28, 569, 673
NlaIII	CATG	8 cut(s)	43, 84, 230, 490, 781, 855, 1018, 1032
NlaIV	GGNNCC	5 cut(s)	422, 484, 514, 525, 610
NmeAIII	GCCGAG	1 cut(s)	421
NmuCI	GTSAC	5 cut(s)	83, 122, 473, 602, 955
NsiI	ATGCAT	2 cut(s)	454, 838
NspI	RCATGY	2 cut(s)	781, 855
PaeI	GCATGC	1 cut(s)	855
PaeR7I	CTCGAG	1 cut(s)	127
PasI	CCCWGGG	1 cut(s)	620
PciI	ACATGT	1 cut(s)	777
PciSI	GCTCTTC	1 cut(s)	723
PctI	GAATGC	2 cut(s)	454, 1234
PfeI	GAWTC	3 cut(s)	356, 679, 875
PscI	ACATGT	1 cut(s)	777
PshBI	ATTAAT	1 cut(s)	797
Psp6I	CCWGG	4 cut(s)	565, 619, 782, 1039
PspGI	CCWGG	4 cut(s)	565, 619, 782, 1039
PspN4I	GGNNCC	5 cut(s)	422, 484, 514, 525, 610
PspPI	GGNCC	2 cut(s)	36, 1043
PstI	CTGCAG	1 cut(s)	865
PstNI	CAGNNNCTG	3 cut(s)	299, 869, 1046
PsuI	RGATCY	2 cut(s)	569, 673
PvuII	CAGCTG	1 cut(s)	245
RsaI	GTAC	2 cut(s)	859, 889
RsaNI	GTAC	2 cut(s)	858, 888
SacII	CCGCGG	1 cut(s)	351
SapI	GCTCTTC	1 cut(s)	723
SaqAI	TTAA	4 cut(s)	534, 797, 881, 1194
Sau3AI	GATC	3 cut(s)	28, 569, 673
Sau96I	GGNCC	2 cut(s)	36, 1043
ScaI	AGTACT	1 cut(s)	859
ScrFI	CCNGG	4 cut(s)	567, 621, 784, 1041
SduI	GDGCHC	3 cut(s)	425, 627, 790
SfaNI	GCATC	7 cut(s)	49, 140, 242, 257, 461, 552, 875
SfcI	CTRYAG	1 cut(s)	861
Sfr274I	CTCGAG	1 cut(s)	127
Sfr303I	CCGCGG	1 cut(s)	351
SgrAI	CRCCGGYG	1 cut(s)	959
SgrBI	CCGCGG	1 cut(s)	351
SinI	GGWCC	1 cut(s)	36
SlaI	CTCGAG	1 cut(s)	127
SmlI	CTYRAG	1 cut(s)	127
SmoI	CTYRAG	1 cut(s)	127
SphI	GCATGC	1 cut(s)	855
SsiI	CCGC	6 cut(s)	342, 348, 350, 872, 1186, 1232
SspMI	CTAG	1 cut(s)	329
StyD4I	CCNGG	4 cut(s)	565, 619, 782, 1039
StyI	CCWWGG	3 cut(s)	39, 486, 1028
TaaI	ACNGT	2 cut(s)	306, 933
TaiI	ACGT	1 cut(s)	480
TaqI	TCGA	3 cut(s)	116, 128, 1072
TaqII	GACCGA	1 cut(s)	102
TatI	WGTACW	2 cut(s)	857, 887
TauI	GCSGC	2 cut(s)	350, 1235
TfiI	GAWTC	3 cut(s)	356, 679, 875
Tru1I	TTAA	4 cut(s)	534, 797, 881, 1194
Tru9I	TTAA	4 cut(s)	534, 797, 881, 1194
TscAI	CASTG	2 cut(s)	412, 478
TseFI	GTSAC	5 cut(s)	83, 122, 473, 602, 955
TseI	GCWGC	8 cut(s)	62, 245, 285, 344, 803, 841, 844, 863
Tsp45I	GTSAC	5 cut(s)	83, 122, 473, 602, 955
TspDTI	ATGAA	2 cut(s)	681, 933
TspGWI	ACGGA	1 cut(s)	621
TspRI	CASTG	2 cut(s)	412, 478
VpaK11BI	GGWCC	1 cut(s)	36
VspI	ATTAAT	1 cut(s)	797
XagI	CCTNNNNNAGG	1 cut(s)	115
XapI	RAATTY	2 cut(s)	461, 577
XbaI	TCTAGA	1 cut(s)	328
XceI	RCATGY	2 cut(s)	781, 855
XhoI	CTCGAG	1 cut(s)	127
XspI	CTAG	1 cut(s)	329
ZrmI	AGTACT	1 cut(s)	859
Zsp2I	ATGCAT	2 cut(s)	454, 838

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.