Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002045.1

Orthogroup ID

OG0009598

Physical Location & Seq

Genomic Coordinates Reverse (-)

214967 .. 218070

Gene Structure 3104 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002045.1_g000041.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

atggcaactgtaaccaccgcaagaggaggaggaagcatcctctgctcccaccatgaacccttcaaccgccaccgctttctctctctccacccacctcgccccctcctccaccgccacccatcagagcccacctccactttcctcacccattccaagcccattgggcccatattgaaactcaccgccccacgagccgctgacacctcctccgtccccaccaccggcgacaaagccatagtcaccgacgaccagttctccctcgccaaggtttcatttggttctattggattagttggtgggattacactgttagggtatggttttggggcatactttaatatcctacctggttctgaatggtcagcattgatgttaacatatgggtttcctcttgcaatcattggtatggctttcaagtatgcagaactaaagccggtgccatgcttgacttatttggatgctcagcaattaagggaaacagctgccaccccgattcttatgcaggtcaggaatgatgttacgagataccgctatggggatgagcagcatttggatgaggcgttaaagcgaattttccagtatggtcagggtgggggaattgctcggaggagtgcgcctgttctacaaaggattcgtgaagaggtcacagaagatggtagatactgtttagtcctggtgtttgaggcaaaatctctacagttgtctgattttgaacaaagacaggctaaatttacatcattcttcggaccaggcattacagctgaaattgccaagggagaggagaatttatatgaagtcaaacttatttccaactccaacgtcaaccccactgcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2854 UMP1

Protein Analysis

278

Amino Acids

30.59

Weight (kDa)

8.38

Isoelectric Point (pI)

34.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009598)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G38660 AT5G38660
fragaria_vesca	FvH4_6g45340 FvH4_6g45340 FvH4_6g45340
malus_domestica	MD09G1084900.v1.1 MD17G1074400.v1.1
prunus_persica	Prupe.3G239600_v2.0.a1
pyrus_communis	pycom09g01050 pycom17g07500
rosa_chinensis	RchiOBHm_Chr2g0163121
rosa_laevigata	RLG00000021375
rosa_multiflora	Rmu_sc0002045.1_g000041 Rmu_sc0002045.1_g000043 Rmu_sc0003984.1_g000019
rosa_roxburghii	Rroxscaffold_2G00087530
rosa_rugosa	Rorug02G0500700 Rorug02G0500700
rosa_samantha	Rh2BG579300 Rh2CG549200 Rh2DG589600
rosa_wichuraiana	Rw2G046950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	493
AccB1I	GGYRCC	1 cut(s)	436
AciI	CCGC	7 cut(s)	18, 67, 73, 112, 183, 195, 529
AcsI	RAATTY	3 cut(s)	570, 728, 784
AfiI	CCNNNNNNNGG	3 cut(s)	221, 265, 535
AgsI	TTSAA	4 cut(s)	64, 175, 415, 713
AjnI	CCWGG	3 cut(s)	346, 672, 748
AluBI	AGCT	2 cut(s)	482, 761
AluI	AGCT	2 cut(s)	482, 761
AoxI	GGCC	1 cut(s)	164
ApaI	GGGCCC	1 cut(s)	168
ApeKI	GCWGC	2 cut(s)	482, 544
ApoI	RAATTY	3 cut(s)	570, 728, 784
ArsI	GACNNNNNNTTYG	2 cut(s)	222, 254
AspLEI	GCGC	1 cut(s)	616
AspS9I	GGNCC	3 cut(s)	164, 165, 746
AsuHPI	GGTGA	3 cut(s)	136, 172, 232
AvaII	GGWCC	1 cut(s)	746
BaeGI	GKGCMC	1 cut(s)	168
BanI	GGYRCC	1 cut(s)	436
BanII	GRGCYC	2 cut(s)	129, 168
BauI	CACGAG	1 cut(s)	189
BbvI	GCAGC	2 cut(s)	469, 556
BccI	CCATC	2 cut(s)	127, 647
BcgI	CGANNNNNNTGC	2 cut(s)	481, 515
BciT130I	CCWGG	3 cut(s)	348, 674, 750
BfmI	CTRYAG	1 cut(s)	695
BfuAI	ACCTGC	1 cut(s)	493
BglI	GCCNNNNNGGC	1 cut(s)	163
BisI	GCNGC	3 cut(s)	195, 483, 545
BlpI	GCTNAGC	1 cut(s)	462
BlsI	GCNGC	3 cut(s)	196, 484, 546
Bme1390I	CCNGG	3 cut(s)	348, 674, 750
Bme18I	GGWCC	1 cut(s)	746
BmgT120I	GGNCC	3 cut(s)	164, 165, 746
BmiI	GGNNCC	2 cut(s)	166, 438
BmrFI	CCNGG	3 cut(s)	348, 674, 750
BmsI	GCATC	2 cut(s)	45, 448
BplI	GAGNNNNNCTC	2 cut(s)	116, 148
Bpu1102I	GCTNAGC	1 cut(s)	462
BsaJI	CCNNGG	2 cut(s)	264, 771
BsaXI	ACNNNNNCTCC	4 cut(s)	191, 221, 239, 269
Bsc4I	CCNNNNNNNGG	3 cut(s)	221, 265, 535
Bse118I	RCCGGY	2 cut(s)	221, 433
Bse1I	ACTGG	2 cut(s)	250, 577
BseBI	CCWGG	3 cut(s)	348, 674, 750
BseDI	CCNNGG	2 cut(s)	264, 771
BseGI	GGATG	4 cut(s)	36, 463, 544, 559
BseLI	CCNNNNNNNGG	3 cut(s)	221, 265, 535
BseMII	CTCAG	1 cut(s)	476
BseNI	ACTGG	2 cut(s)	250, 577
BseRI	GAGGAG	6 cut(s)	39, 42, 95, 196, 622, 794
BseSI	GKGCMC	1 cut(s)	168
BseXI	GCAGC	2 cut(s)	469, 556
BshFI	GGCC	1 cut(s)	166
BshNI	GGYRCC	1 cut(s)	436
BsiSI	CCGG	2 cut(s)	222, 434
BslFI	GGGAC	1 cut(s)	197
BslI	CCNNNNNNNGG	3 cut(s)	221, 265, 535
BsmFI	GGGAC	1 cut(s)	197
BsnI	GGCC	1 cut(s)	166
Bsp120I	GGGCCC	1 cut(s)	164
Bsp1286I	GDGCHC	2 cut(s)	129, 168
Bsp1720I	GCTNAGC	1 cut(s)	462
BspACI	CCGC	7 cut(s)	18, 67, 73, 112, 183, 195, 529
BspANI	GGCC	1 cut(s)	166
BspCNI	CTCAG	1 cut(s)	475
BspLI	GGNNCC	2 cut(s)	166, 438
BspMI	ACCTGC	1 cut(s)	493
BspT107I	GGYRCC	1 cut(s)	436
BsrFI	RCCGGY	2 cut(s)	221, 433
BsrI	ACTGG	2 cut(s)	250, 577
BssAI	RCCGGY	2 cut(s)	221, 433
BssECI	CCNNGG	2 cut(s)	264, 771
BssSI	CACGAG	1 cut(s)	189
BssT1I	CCWWGG	2 cut(s)	264, 771
Bst2BI	CACGAG	1 cut(s)	189
Bst2UI	CCWGG	3 cut(s)	348, 674, 750
Bst4CI	ACNGT	4 cut(s)	10, 309, 665, 699
Bst6I	CTCTTC	1 cut(s)	633
BstAPI	GCANNNNNTGC	1 cut(s)	42
BstDEI	CTNAG	1 cut(s)	462
BstENI	CCTNNNNNAGG	1 cut(s)	263
BstF5I	GGATG	4 cut(s)	36, 463, 544, 559
BstHHI	GCGC	1 cut(s)	616
BstMWI	GCNNNNNNNGC	4 cut(s)	42, 163, 191, 767
BstNI	CCWGG	3 cut(s)	348, 674, 750
BstSCI	CCNGG	3 cut(s)	346, 672, 748
BstSFI	CTRYAG	1 cut(s)	695
BstSLI	GKGCMC	1 cut(s)	168
BstV1I	GCAGC	2 cut(s)	469, 556
BsuRI	GGCC	1 cut(s)	166
BtsCI	GGATG	4 cut(s)	36, 463, 544, 559
BtsI	GCAGTG	1 cut(s)	828
BtsIMutI	CAGTG	2 cut(s)	305, 828
BveI	ACCTGC	1 cut(s)	493
CfoI	GCGC	1 cut(s)	616
Cfr10I	RCCGGY	2 cut(s)	221, 433
Cfr13I	GGNCC	3 cut(s)	164, 165, 746
CsiI	ACCWGGT	1 cut(s)	346
CviAII	CATG	2 cut(s)	53, 441
DdeI	CTNAG	1 cut(s)	462
Eam1104I	CTCTTC	1 cut(s)	633
EarI	CTCTTC	1 cut(s)	633
Eco130I	CCWWGG	2 cut(s)	264, 771
Eco24I	GRGCYC	2 cut(s)	129, 168
Eco47I	GGWCC	1 cut(s)	746
EcoNI	CCTNNNNNAGG	1 cut(s)	263
EcoRII	CCWGG	3 cut(s)	346, 672, 748
EcoT14I	CCWWGG	2 cut(s)	264, 771
EcoT38I	GRGCYC	2 cut(s)	129, 168
ErhI	CCWWGG	2 cut(s)	264, 771
FaeI	CATG	2 cut(s)	56, 444
FalI	AAGNNNNNCTT	2 cut(s)	786, 818
FaqI	GGGAC	1 cut(s)	197
FatI	CATG	2 cut(s)	52, 440
FauNDI	CATATG	1 cut(s)	379
Fnu4HI	GCNGC	3 cut(s)	195, 483, 545
FokI	GGATG	4 cut(s)	23, 470, 551, 566
FriOI	GRGCYC	2 cut(s)	129, 168
Fsp4HI	GCNGC	3 cut(s)	195, 483, 545
GlaI	GCGC	1 cut(s)	615
GluI	GCNGC	3 cut(s)	195, 483, 545
HaeIII	GGCC	1 cut(s)	166
HapII	CCGG	2 cut(s)	222, 434
HhaI	GCGC	1 cut(s)	616
Hin1II	CATG	2 cut(s)	56, 444
Hin6I	GCGC	1 cut(s)	614
HinP1I	GCGC	1 cut(s)	614
HincII	GTYRAC	2 cut(s)	375, 823
HindII	GTYRAC	2 cut(s)	375, 823
HinfI	GANTC	2 cut(s)	493, 631
HpaI	GTTAAC	1 cut(s)	375
HpaII	CCGG	2 cut(s)	222, 434
HphI	GGTGA	3 cut(s)	136, 172, 232
Hpy166II	GTNNAC	2 cut(s)	375, 823
Hpy188I	TCNGA	5 cut(s)	124, 355, 606, 706, 746
Hpy188III	TCNNGA	2 cut(s)	508, 635
Hpy8I	GTNNAC	2 cut(s)	375, 823
Hpy99I	CGWCG	1 cut(s)	248
HpyAV	CCTTC	1 cut(s)	70
HpyCH4III	ACNGT	4 cut(s)	10, 309, 665, 699
HpyCH4IV	ACGT	1 cut(s)	819
HpyCH4V	TGCA	4 cut(s)	395, 422, 502, 833
HpyF10VI	GCNNNNNNNGC	4 cut(s)	42, 163, 191, 767
HpyF3I	CTNAG	1 cut(s)	462
HpySE526I	ACGT	1 cut(s)	819
Hsp92II	CATG	2 cut(s)	56, 444
HspAI	GCGC	1 cut(s)	614
KspAI	GTTAAC	1 cut(s)	375
LmnI	GCTCC	1 cut(s)	50
Lsp1109I	GCAGC	2 cut(s)	469, 556
LweI	GCATC	2 cut(s)	45, 448
MabI	ACCWGGT	1 cut(s)	346
MaeII	ACGT	1 cut(s)	819
MaeIII	GTNAC	4 cut(s)	10, 238, 517, 643
MboII	GAAGA	3 cut(s)	650, 662, 733
MhlI	GDGCHC	2 cut(s)	129, 168
MluCI	AATT	6 cut(s)	467, 570, 597, 728, 765, 784
MmeI	TCCRAC	1 cut(s)	834
MseI	TTAA	4 cut(s)	336, 374, 470, 563
MslI	CAYNNNNRTG	2 cut(s)	404, 552
MspA1I	CMGCKG	3 cut(s)	197, 482, 761
MspI	CCGG	2 cut(s)	222, 434
MspR9I	CCNGG	3 cut(s)	348, 674, 750
MvaI	CCWGG	3 cut(s)	348, 674, 750
MwoI	GCNNNNNNNGC	4 cut(s)	42, 163, 191, 767
NdeI	CATATG	1 cut(s)	379
NlaIII	CATG	2 cut(s)	56, 444
NlaIV	GGNNCC	2 cut(s)	166, 438
NmuCI	GTSAC	2 cut(s)	238, 643
PfeI	GAWTC	2 cut(s)	493, 631
PkrI	GCNGC	3 cut(s)	196, 484, 546
Psp6I	CCWGG	3 cut(s)	346, 672, 748
PspGI	CCWGG	3 cut(s)	346, 672, 748
PspN4I	GGNNCC	2 cut(s)	166, 438
PspOMI	GGGCCC	1 cut(s)	164
PspPI	GGNCC	3 cut(s)	164, 165, 746
PvuII	CAGCTG	2 cut(s)	482, 761
RseI	CAYNNNNRTG	2 cut(s)	404, 552
SaqAI	TTAA	4 cut(s)	336, 374, 470, 563
SatI	GCNGC	3 cut(s)	195, 483, 545
Sau96I	GGNCC	3 cut(s)	164, 165, 746
ScrFI	CCNGG	3 cut(s)	348, 674, 750
SduI	GDGCHC	2 cut(s)	129, 168
SexAI	ACCWGGT	1 cut(s)	346
SfaNI	GCATC	2 cut(s)	45, 448
SfcI	CTRYAG	1 cut(s)	695
SgrAI	CRCCGGYG	1 cut(s)	221
SinI	GGWCC	1 cut(s)	746
SmiMI	CAYNNNNRTG	2 cut(s)	404, 552
Sse9I	AATT	6 cut(s)	467, 570, 597, 728, 765, 784
SsiI	CCGC	7 cut(s)	18, 67, 73, 112, 183, 195, 529
StyD4I	CCNGG	3 cut(s)	346, 672, 748
StyI	CCWWGG	2 cut(s)	264, 771
TaaI	ACNGT	4 cut(s)	10, 309, 665, 699
TaiI	ACGT	1 cut(s)	822
TasI	AATT	6 cut(s)	467, 570, 597, 728, 765, 784
TauI	GCSGC	1 cut(s)	197
TfiI	GAWTC	2 cut(s)	493, 631
Tru1I	TTAA	4 cut(s)	336, 374, 470, 563
Tru9I	TTAA	4 cut(s)	336, 374, 470, 563
TscAI	CASTG	2 cut(s)	312, 835
TseFI	GTSAC	2 cut(s)	238, 643
TseI	GCWGC	2 cut(s)	482, 544
Tsp45I	GTSAC	2 cut(s)	238, 643
TspDTI	ATGAA	3 cut(s)	69, 261, 807
TspGWI	ACGGA	1 cut(s)	199
TspRI	CASTG	2 cut(s)	312, 835
VpaK11BI	GGWCC	1 cut(s)	746
XagI	CCTNNNNNAGG	1 cut(s)	263
XapI	RAATTY	3 cut(s)	570, 728, 784

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.