Rh2DG589600

Protein of unknown function (DUF2854)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0009598
Physical Location & Seq
Forward (+)
82257748 .. 82260856
3109 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG589600.1

Sequence Viewer

Length: 516 bp
ATGGCAACTTTTACCACCGCAAGAGGAGGAGGAAGCATCCTCTGCTCCCACCATGAACCCTTCACCCGCCACCGCTTTCTCTCTCTCCACCCACCTTGCCCCCTCCTCCACCGCCACCCATCAAAGCCCACCTCCACTTTCCTCACCCATTCCAAGCCCACTGGGCCCATATTGAAACTCACCGCCCCACGAGCCGCTGACACCTCCTCCGTCCCCACCACCGGCGACAAAGCCATAGTCACCGACGACCAGTTCTCCCTCGCCAAGGGTGGGGGAATTGCTCGGAGGAGTGCGCCTGTTCTACAAAGGATTCGTGAAGAGGTCACAGAAGATGGTAGATACTGTTTAGTCCTGGTGTTTGAGGCAAAATATCTACAGTTGTCTGATTTTGAACAAAGACAGGCTAAATTTACATCATTCTTCGGACCAGGCATTACAGCTGAAATTGCCAAGGGAGAGGAGAATTTATATGAAGTCAAACTTATTTCCAACTCCAACGTCAACCCCACTGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2854 UMP1

Protein Analysis

171

Amino Acids

18.72

Weight (kDa)

9.1

Isoelectric Point (pI)

38.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2854 PF11016 95 - 149 1e-13 Protein of unknown function (DUF2854)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 6 cut(s) 18, 67, 73, 112, 183, 195
AcsI RAATTY 2 cut(s) 407, 463
AfiI CCNNNNNNNGG 3 cut(s) 221, 265, 270
AgsI TTSAA 2 cut(s) 175, 392
AjnI CCWGG 2 cut(s) 351, 427
AluBI AGCT 1 cut(s) 440
AluI AGCT 1 cut(s) 440
AoxI GGCC 1 cut(s) 164
ApaI GGGCCC 1 cut(s) 168
ApoI RAATTY 2 cut(s) 407, 463
ArsI GACNNNNNNTTYG 2 cut(s) 222, 254
AspLEI GCGC 1 cut(s) 295
AspS9I GGNCC 3 cut(s) 164, 165, 425
AsuHPI GGTGA 4 cut(s) 55, 136, 172, 232
AvaII GGWCC 1 cut(s) 425
BaeGI GKGCMC 1 cut(s) 168
BanII GRGCYC 1 cut(s) 168
BauI CACGAG 1 cut(s) 189
BccI CCATC 2 cut(s) 127, 326
BciT130I CCWGG 2 cut(s) 353, 429
BfmI CTRYAG 1 cut(s) 374
BglI GCCNNNNNGGC 1 cut(s) 163
BisI GCNGC 1 cut(s) 195
BlsI GCNGC 1 cut(s) 196
Bme1390I CCNGG 2 cut(s) 353, 429
Bme18I GGWCC 1 cut(s) 425
BmgT120I GGNCC 3 cut(s) 164, 165, 425
BmiI GGNNCC 1 cut(s) 166
BmrFI CCNGG 2 cut(s) 353, 429
BmrI ACTGGG 1 cut(s) 171
BmsI GCATC 1 cut(s) 45
BmuI ACTGGG 1 cut(s) 171
BsaJI CCNNGG 2 cut(s) 264, 450
BsaXI ACNNNNNCTCC 4 cut(s) 191, 221, 239, 269
Bsc4I CCNNNNNNNGG 3 cut(s) 221, 265, 270
Bse118I RCCGGY 1 cut(s) 221
Bse1I ACTGG 2 cut(s) 166, 250
BseBI CCWGG 2 cut(s) 353, 429
BseDI CCNNGG 2 cut(s) 264, 450
BseGI GGATG 1 cut(s) 36
BseLI CCNNNNNNNGG 3 cut(s) 221, 265, 270
BseNI ACTGG 2 cut(s) 166, 250
BseRI GAGGAG 6 cut(s) 39, 42, 95, 196, 301, 473
BseSI GKGCMC 1 cut(s) 168
BshFI GGCC 1 cut(s) 166
BsiSI CCGG 1 cut(s) 222
BslFI GGGAC 1 cut(s) 197
BslI CCNNNNNNNGG 3 cut(s) 221, 265, 270
BsmFI GGGAC 1 cut(s) 197
BsnI GGCC 1 cut(s) 166
Bsp120I GGGCCC 1 cut(s) 164
Bsp1286I GDGCHC 1 cut(s) 168
BspACI CCGC 6 cut(s) 18, 67, 73, 112, 183, 195
BspANI GGCC 1 cut(s) 166
BspLI GGNNCC 1 cut(s) 166
BsrFI RCCGGY 1 cut(s) 221
BsrI ACTGG 2 cut(s) 166, 250
BssAI RCCGGY 1 cut(s) 221
BssECI CCNNGG 2 cut(s) 264, 450
BssSI CACGAG 1 cut(s) 189
BssT1I CCWWGG 2 cut(s) 264, 450
Bst2BI CACGAG 1 cut(s) 189
Bst2UI CCWGG 2 cut(s) 353, 429
Bst4CI ACNGT 2 cut(s) 344, 378
Bst6I CTCTTC 1 cut(s) 312
BstAPI GCANNNNNTGC 1 cut(s) 42
BstENI CCTNNNNNAGG 1 cut(s) 263
BstF5I GGATG 1 cut(s) 36
BstHHI GCGC 1 cut(s) 295
BstMWI GCNNNNNNNGC 4 cut(s) 42, 163, 191, 446
BstNI CCWGG 2 cut(s) 353, 429
BstSCI CCNGG 2 cut(s) 351, 427
BstSFI CTRYAG 1 cut(s) 374
BstSLI GKGCMC 1 cut(s) 168
BsuRI GGCC 1 cut(s) 166
BtsCI GGATG 1 cut(s) 36
BtsI GCAGTG 1 cut(s) 507
BtsIMutI CAGTG 2 cut(s) 159, 507
CfoI GCGC 1 cut(s) 295
Cfr10I RCCGGY 1 cut(s) 221
Cfr13I GGNCC 3 cut(s) 164, 165, 425
CspCI CAANNNNNGTGG 2 cut(s) 77, 112
CviAII CATG 1 cut(s) 53
CviJI RGCY 7 cut(s) 127, 157, 166, 194, 233, 404, 440
CviKI_1 RGCY 7 cut(s) 127, 157, 166, 194, 233, 404, 440
Eam1104I CTCTTC 1 cut(s) 312
EarI CTCTTC 1 cut(s) 312
Eco130I CCWWGG 2 cut(s) 264, 450
Eco24I GRGCYC 1 cut(s) 168
Eco47I GGWCC 1 cut(s) 425
EcoNI CCTNNNNNAGG 1 cut(s) 263
EcoRII CCWGG 2 cut(s) 351, 427
EcoT14I CCWWGG 2 cut(s) 264, 450
EcoT38I GRGCYC 1 cut(s) 168
ErhI CCWWGG 2 cut(s) 264, 450
FaeI CATG 1 cut(s) 56
FaiI YATR 6 cut(s) 54, 170, 236, 469, 471, 514
FalI AAGNNNNNCTT 2 cut(s) 465, 497
FaqI GGGAC 1 cut(s) 197
FatI CATG 1 cut(s) 52
FauI CCCGC 1 cut(s) 74
Fnu4HI GCNGC 1 cut(s) 195
FokI GGATG 1 cut(s) 23
FriOI GRGCYC 1 cut(s) 168
Fsp4HI GCNGC 1 cut(s) 195
GlaI GCGC 1 cut(s) 294
GluI GCNGC 1 cut(s) 195
HaeIII GGCC 1 cut(s) 166
HapII CCGG 1 cut(s) 222
HhaI GCGC 1 cut(s) 295
Hin1II CATG 1 cut(s) 56
Hin6I GCGC 1 cut(s) 293
HinP1I GCGC 1 cut(s) 293
HincII GTYRAC 1 cut(s) 502
HindII GTYRAC 1 cut(s) 502
HinfI GANTC 1 cut(s) 310
HpaII CCGG 1 cut(s) 222
HphI GGTGA 4 cut(s) 55, 136, 172, 232
Hpy166II GTNNAC 1 cut(s) 502
Hpy188I TCNGA 3 cut(s) 285, 385, 425
Hpy188III TCNNGA 1 cut(s) 314
Hpy8I GTNNAC 1 cut(s) 502
Hpy99I CGWCG 1 cut(s) 248
HpyAV CCTTC 1 cut(s) 70
HpyCH4III ACNGT 2 cut(s) 344, 378
HpyCH4IV ACGT 1 cut(s) 498
HpyCH4V TGCA 1 cut(s) 512
HpyF10VI GCNNNNNNNGC 4 cut(s) 42, 163, 191, 446
HpySE526I ACGT 1 cut(s) 498
Hsp92II CATG 1 cut(s) 56
HspAI GCGC 1 cut(s) 293
LmnI GCTCC 1 cut(s) 50
LpnPI CCDG 9 cut(s) 147, 235, 263, 309, 338, 365, 386, 414, 441
LweI GCATC 1 cut(s) 45
MaeII ACGT 1 cut(s) 498
MaeIII GTNAC 2 cut(s) 238, 322
MboII GAAGA 3 cut(s) 329, 341, 412
MhlI GDGCHC 1 cut(s) 168
MluCI AATT 4 cut(s) 276, 407, 444, 463
MmeI TCCRAC 1 cut(s) 513
MspA1I CMGCKG 2 cut(s) 197, 440
MspI CCGG 1 cut(s) 222
MspR9I CCNGG 2 cut(s) 353, 429
MvaI CCWGG 2 cut(s) 353, 429
MwoI GCNNNNNNNGC 4 cut(s) 42, 163, 191, 446
NlaIII CATG 1 cut(s) 56
NlaIV GGNNCC 1 cut(s) 166
NmuCI GTSAC 2 cut(s) 238, 322
PfeI GAWTC 1 cut(s) 310
PkrI GCNGC 1 cut(s) 196
Psp6I CCWGG 2 cut(s) 351, 427
PspGI CCWGG 2 cut(s) 351, 427
PspN4I GGNNCC 1 cut(s) 166
PspOMI GGGCCC 1 cut(s) 164
PspPI GGNCC 3 cut(s) 164, 165, 425
PvuII CAGCTG 1 cut(s) 440
SatI GCNGC 1 cut(s) 195
Sau96I GGNCC 3 cut(s) 164, 165, 425
ScrFI CCNGG 2 cut(s) 353, 429
SduI GDGCHC 1 cut(s) 168
SetI ASST 6 cut(s) 97, 134, 206, 324, 442, 501
SfaNI GCATC 1 cut(s) 45
SfcI CTRYAG 1 cut(s) 374
SgrAI CRCCGGYG 1 cut(s) 221
SinI GGWCC 1 cut(s) 425
Sse9I AATT 4 cut(s) 276, 407, 444, 463
SsiI CCGC 6 cut(s) 18, 67, 73, 112, 183, 195
StyD4I CCNGG 2 cut(s) 351, 427
StyI CCWWGG 2 cut(s) 264, 450
TaaI ACNGT 2 cut(s) 344, 378
TaiI ACGT 1 cut(s) 501
TasI AATT 4 cut(s) 276, 407, 444, 463
TauI GCSGC 1 cut(s) 197
TfiI GAWTC 1 cut(s) 310
TscAI CASTG 2 cut(s) 166, 514
TseFI GTSAC 2 cut(s) 238, 322
Tsp45I GTSAC 2 cut(s) 238, 322
TspDTI ATGAA 2 cut(s) 69, 486
TspGWI ACGGA 1 cut(s) 199
TspRI CASTG 2 cut(s) 166, 514
VpaK11BI GGWCC 1 cut(s) 425
XagI CCTNNNNNAGG 1 cut(s) 263
XapI RAATTY 2 cut(s) 407, 463
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.