Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003984.1

Orthogroup ID

OG0009598

Physical Location & Seq

Genomic Coordinates Forward (+)

68610 .. 68927

Gene Structure 318 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003984.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

atggcaactgtaaccaccgcaagaggaggaggaagcatcctctgctcccaccatgaacccttcacccgccaccgctttctctctctccacccacctcgccccctcctccaccgccacccatcaaagcccacctccactttcctcacccattccaagcccattgggcccatattgaaactcaccgccccacgagccgctgacacctcctccgtcccctccaccggcgacaaagccatagtcaccgacgaccagttctccctcgccaaggttggcctaaagttctctgatttttttactctgttttattcattttcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2854 UMP1

Protein Analysis

105

Amino Acids

11.49

Weight (kDa)

10.12

Isoelectric Point (pI)

25.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009598)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G38660 AT5G38660
fragaria_vesca	FvH4_6g45340 FvH4_6g45340 FvH4_6g45340
malus_domestica	MD09G1084900.v1.1 MD17G1074400.v1.1
prunus_persica	Prupe.3G239600_v2.0.a1
pyrus_communis	pycom09g01050 pycom17g07500
rosa_chinensis	RchiOBHm_Chr2g0163121
rosa_laevigata	RLG00000021375
rosa_multiflora	Rmu_sc0002045.1_g000041 Rmu_sc0002045.1_g000043 Rmu_sc0003984.1_g000019
rosa_roxburghii	Rroxscaffold_2G00087530
rosa_rugosa	Rorug02G0500700 Rorug02G0500700
rosa_samantha	Rh2BG579300 Rh2CG549200 Rh2DG589600
rosa_wichuraiana	Rw2G046950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	6 cut(s)	18, 67, 73, 112, 183, 195
AfiI	CCNNNNNNNGG	2 cut(s)	221, 265
AgsI	TTSAA	1 cut(s)	175
AoxI	GGCC	2 cut(s)	164, 271
ApaI	GGGCCC	1 cut(s)	168
ArsI	GACNNNNNNTTYG	2 cut(s)	222, 254
AspS9I	GGNCC	2 cut(s)	164, 165
AsuHPI	GGTGA	4 cut(s)	55, 136, 172, 232
BaeGI	GKGCMC	1 cut(s)	168
BanII	GRGCYC	1 cut(s)	168
BauI	CACGAG	1 cut(s)	189
BccI	CCATC	1 cut(s)	127
BglI	GCCNNNNNGGC	1 cut(s)	163
BisI	GCNGC	1 cut(s)	195
BlsI	GCNGC	1 cut(s)	196
BmgT120I	GGNCC	2 cut(s)	164, 165
BmiI	GGNNCC	1 cut(s)	166
BmsI	GCATC	1 cut(s)	45
BsaJI	CCNNGG	1 cut(s)	264
BsaXI	ACNNNNNCTCC	4 cut(s)	191, 221, 239, 269
Bsc4I	CCNNNNNNNGG	2 cut(s)	221, 265
Bse118I	RCCGGY	1 cut(s)	221
Bse1I	ACTGG	1 cut(s)	250
BseDI	CCNNGG	1 cut(s)	264
BseGI	GGATG	1 cut(s)	36
BseLI	CCNNNNNNNGG	2 cut(s)	221, 265
BseNI	ACTGG	1 cut(s)	250
BseRI	GAGGAG	4 cut(s)	39, 42, 95, 196
BseSI	GKGCMC	1 cut(s)	168
BshFI	GGCC	2 cut(s)	166, 273
BsiSI	CCGG	1 cut(s)	222
BslFI	GGGAC	1 cut(s)	197
BslI	CCNNNNNNNGG	2 cut(s)	221, 265
BsmFI	GGGAC	1 cut(s)	197
BsnI	GGCC	2 cut(s)	166, 273
Bsp120I	GGGCCC	1 cut(s)	164
Bsp1286I	GDGCHC	1 cut(s)	168
BspACI	CCGC	6 cut(s)	18, 67, 73, 112, 183, 195
BspANI	GGCC	2 cut(s)	166, 273
BspHI	TCATGA	1 cut(s)	314
BspLI	GGNNCC	1 cut(s)	166
BsrFI	RCCGGY	1 cut(s)	221
BsrI	ACTGG	1 cut(s)	250
BssAI	RCCGGY	1 cut(s)	221
BssECI	CCNNGG	1 cut(s)	264
BssSI	CACGAG	1 cut(s)	189
BssT1I	CCWWGG	1 cut(s)	264
Bst2BI	CACGAG	1 cut(s)	189
Bst4CI	ACNGT	1 cut(s)	10
BstAPI	GCANNNNNTGC	1 cut(s)	42
BstENI	CCTNNNNNAGG	1 cut(s)	263
BstF5I	GGATG	1 cut(s)	36
BstMWI	GCNNNNNNNGC	3 cut(s)	42, 163, 191
BstSLI	GKGCMC	1 cut(s)	168
BsuRI	GGCC	2 cut(s)	166, 273
BtsCI	GGATG	1 cut(s)	36
CciI	TCATGA	1 cut(s)	314
Cfr10I	RCCGGY	1 cut(s)	221
Cfr13I	GGNCC	2 cut(s)	164, 165
CviAII	CATG	2 cut(s)	53, 315
CviJI	RGCY	6 cut(s)	127, 157, 166, 194, 233, 273
CviKI_1	RGCY	6 cut(s)	127, 157, 166, 194, 233, 273
Eco130I	CCWWGG	1 cut(s)	264
Eco24I	GRGCYC	1 cut(s)	168
EcoNI	CCTNNNNNAGG	1 cut(s)	263
EcoT14I	CCWWGG	1 cut(s)	264
EcoT38I	GRGCYC	1 cut(s)	168
ErhI	CCWWGG	1 cut(s)	264
FaeI	CATG	2 cut(s)	56, 318
FaiI	YATR	4 cut(s)	54, 170, 236, 316
FaqI	GGGAC	1 cut(s)	197
FatI	CATG	2 cut(s)	52, 314
FauI	CCCGC	1 cut(s)	74
Fnu4HI	GCNGC	1 cut(s)	195
FokI	GGATG	1 cut(s)	23
FriOI	GRGCYC	1 cut(s)	168
Fsp4HI	GCNGC	1 cut(s)	195
GluI	GCNGC	1 cut(s)	195
HaeIII	GGCC	2 cut(s)	166, 273
HapII	CCGG	1 cut(s)	222
Hin1II	CATG	2 cut(s)	56, 318
HpaII	CCGG	1 cut(s)	222
HphI	GGTGA	4 cut(s)	55, 136, 172, 232
Hpy188I	TCNGA	1 cut(s)	286
Hpy188III	TCNNGA	1 cut(s)	315
Hpy99I	CGWCG	1 cut(s)	248
HpyAV	CCTTC	1 cut(s)	70
HpyCH4III	ACNGT	1 cut(s)	10
HpyF10VI	GCNNNNNNNGC	3 cut(s)	42, 163, 191
Hsp92II	CATG	2 cut(s)	56, 318
LmnI	GCTCC	1 cut(s)	50
LpnPI	CCDG	2 cut(s)	235, 263
LweI	GCATC	1 cut(s)	45
MaeIII	GTNAC	2 cut(s)	10, 238
MhlI	GDGCHC	1 cut(s)	168
MslI	CAYNNNNRTG	1 cut(s)	313
MspA1I	CMGCKG	1 cut(s)	197
MspI	CCGG	1 cut(s)	222
MwoI	GCNNNNNNNGC	3 cut(s)	42, 163, 191
NlaIII	CATG	2 cut(s)	56, 318
NlaIV	GGNNCC	1 cut(s)	166
NmuCI	GTSAC	1 cut(s)	238
PagI	TCATGA	1 cut(s)	314
PkrI	GCNGC	1 cut(s)	196
PspN4I	GGNNCC	1 cut(s)	166
PspOMI	GGGCCC	1 cut(s)	164
PspPI	GGNCC	2 cut(s)	164, 165
RseI	CAYNNNNRTG	1 cut(s)	313
SatI	GCNGC	1 cut(s)	195
Sau96I	GGNCC	2 cut(s)	164, 165
SduI	GDGCHC	1 cut(s)	168
SetI	ASST	4 cut(s)	97, 134, 206, 270
SfaNI	GCATC	1 cut(s)	45
SgrAI	CRCCGGYG	1 cut(s)	221
SmiMI	CAYNNNNRTG	1 cut(s)	313
SsiI	CCGC	6 cut(s)	18, 67, 73, 112, 183, 195
StyI	CCWWGG	1 cut(s)	264
TaaI	ACNGT	1 cut(s)	10
TauI	GCSGC	1 cut(s)	197
TseFI	GTSAC	1 cut(s)	238
Tsp45I	GTSAC	1 cut(s)	238
TspDTI	ATGAA	3 cut(s)	69, 297, 303
TspGWI	ACGGA	1 cut(s)	199
XagI	CCTNNNNNAGG	1 cut(s)	263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.