Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0009598

Physical Location & Seq

Genomic Coordinates Reverse (-)

837607 .. 840677

Gene Structure 3071 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g01050.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGGCAACGCAAGCACTATCTACTCCAACTGCAACTGCAAGAGGAAGCAGCAGCTCCTGCCGCCATCATGACGTCAACCGCAGCCGCTTTCTCTCTCTGCGCCACCACACCACTGCCTCATCCTCATCAAGGCCCATCACCAGCTTCCTCATCCACCTGGATCCCATTGGACGCAGAGCCCACCAACTCTGGAAGTCCAAGCCCAAACTGACCATCCAGAGAGCCGCCGACTCTTCCACTCAGCCTTCCACCGTCACCTCCTCCTCTGCCGCCGGCAAAGCCATCGTTCCCGACGACCAGTTCTCCCTTGCTAAGGTTTCGTTTGGGGTTATTGGTCTGGGTGTTGGGGTTTCACTCCTGTCGTATGGTTTCGGAGCGTATTTTAATATCCTTCCTGGGTCCGAATGGTCGGCATTGATGCTCACATACGGCTTCCCTCTTGCAATCATTGGTATGGCTTTCAAGTATGCAGAACTAAAGCCAGTGCCATGCTTGACTTATTTGGATGCGCTACAATTAAGGGAAACAAGTGCCACCCCAATCCTTACACAGGTGAGGAATGATGTTACGAGGTATCGTTATGGAGATGAGCAGCATTTGGATGAGGCGTTGAAACGAATCTTCCAATATGGTCAGGGTGGAGGAATTGCTCGGAGGAGTGCACCTACTCTCCATAGTGTTCGTGAAGAGGTCACCGGAGATGGTAGATACTCTCTAGTCCTGGTGTTTGAGGCCAAAGCTCTGCAGTTGTCAGATTTTGAACAAAGACAGGTTAAGTTTACTTCATTCTTCGGACCAGGAATCACAGCTGAAGTTGGGAAGGGAGAGAATGATCTATACGAAGTCCGACTTATTTCCAACTCCAACGCTAACCCTTCTGCATCACCATTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2854

Protein Analysis

298

Amino Acids

32.34

Weight (kDa)

9.43

Isoelectric Point (pI)

37.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009598)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G38660 AT5G38660
fragaria_vesca	FvH4_6g45340 FvH4_6g45340 FvH4_6g45340
malus_domestica	MD09G1084900.v1.1 MD17G1074400.v1.1
prunus_persica	Prupe.3G239600_v2.0.a1
pyrus_communis	pycom09g01050 pycom17g07500
rosa_chinensis	RchiOBHm_Chr2g0163121
rosa_laevigata	RLG00000021375
rosa_multiflora	Rmu_sc0002045.1_g000041 Rmu_sc0002045.1_g000043 Rmu_sc0003984.1_g000019
rosa_roxburghii	Rroxscaffold_2G00087530
rosa_rugosa	Rorug02G0500700 Rorug02G0500700
rosa_samantha	Rh2BG579300 Rh2CG549200 Rh2DG589600
rosa_wichuraiana	Rw2G046950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	892
AatII	GACGTC	1 cut(s)	75
AciI	CCGC	5 cut(s)	61, 79, 85, 225, 270
AclWI	GGATC	2 cut(s)	155, 168
AcuI	CTGAAG	1 cut(s)	831
AcyI	GRCGYC	1 cut(s)	72
AfiI	CCNNNNNNNGG	3 cut(s)	129, 313, 550
AgsI	TTSAA	3 cut(s)	463, 613, 761
AjnI	CCWGG	4 cut(s)	156, 394, 720, 796
AluBI	AGCT	4 cut(s)	54, 144, 740, 809
AluI	AGCT	4 cut(s)	54, 144, 740, 809
Alw21I	GWGCWC	1 cut(s)	664
Alw44I	GTGCAC	1 cut(s)	660
AlwI	GGATC	2 cut(s)	155, 168
AlwNI	CAGNNNCTG	1 cut(s)	57
AoxI	GGCC	2 cut(s)	131, 732
ApaLI	GTGCAC	1 cut(s)	660
ApeKI	GCWGC	4 cut(s)	48, 51, 81, 592
AspLEI	GCGC	2 cut(s)	102, 511
AspS9I	GGNCC	3 cut(s)	132, 399, 794
AsuHPI	GGTGA	5 cut(s)	130, 247, 565, 685, 876
AvaII	GGWCC	2 cut(s)	399, 794
BaeGI	GKGCMC	1 cut(s)	664
BamHI	GGATCC	1 cut(s)	160
BanII	GRGCYC	1 cut(s)	181
Bbv12I	GWGCWC	1 cut(s)	664
BbvI	GCAGC	4 cut(s)	60, 63, 93, 604
BccI	CCATC	5 cut(s)	72, 143, 221, 290, 695
BceAI	ACGGC	1 cut(s)	445
BcgI	CGANNNNNNTGC	2 cut(s)	265, 299
BciT130I	CCWGG	4 cut(s)	158, 396, 722, 798
BfaI	CTAG	1 cut(s)	716
BfmI	CTRYAG	1 cut(s)	743
BisI	GCNGC	8 cut(s)	49, 52, 61, 82, 85, 225, 270, 593
BlsI	GCNGC	8 cut(s)	50, 53, 62, 83, 86, 226, 271, 594
Bme1390I	CCNGG	4 cut(s)	158, 396, 722, 798
Bme18I	GGWCC	2 cut(s)	399, 794
BmgT120I	GGNCC	3 cut(s)	132, 399, 794
BmiI	GGNNCC	2 cut(s)	162, 400
BmrFI	CCNGG	4 cut(s)	158, 396, 722, 798
BmsI	GCATC	3 cut(s)	408, 496, 890
Bpu10I	CCTNAGC	1 cut(s)	312
BsaHI	GRCGYC	1 cut(s)	72
BsaJI	CCNNGG	1 cut(s)	395
BsaWI	WCCGGW	1 cut(s)	695
BsaXI	ACNNNNNCTCC	4 cut(s)	287, 317, 654, 684
Bsc4I	CCNNNNNNNGG	3 cut(s)	129, 313, 550
Bse118I	RCCGGY	1 cut(s)	272
Bse1I	ACTGG	2 cut(s)	298, 482
BseBI	CCWGG	4 cut(s)	158, 396, 722, 798
BseDI	CCNNGG	1 cut(s)	395
BseGI	GGATG	5 cut(s)	119, 150, 213, 511, 607
BseLI	CCNNNNNNNGG	3 cut(s)	129, 313, 550
BseMII	CTCAG	1 cut(s)	254
BseNI	ACTGG	2 cut(s)	298, 482
BseRI	GAGGAG	3 cut(s)	250, 253, 670
BseSI	GKGCMC	1 cut(s)	664
BseXI	GCAGC	4 cut(s)	60, 63, 93, 604
BshFI	GGCC	2 cut(s)	133, 734
BsiHKAI	GWGCWC	1 cut(s)	664
BsiSI	CCGG	2 cut(s)	273, 696
BslI	CCNNNNNNNGG	3 cut(s)	129, 313, 550
BsnI	GGCC	2 cut(s)	133, 734
Bsp1286I	GDGCHC	2 cut(s)	181, 664
Bsp143I	GATC	2 cut(s)	160, 832
BspACI	CCGC	5 cut(s)	61, 79, 85, 225, 270
BspANI	GGCC	2 cut(s)	133, 734
BspCNI	CTCAG	1 cut(s)	253
BspHI	TCATGA	1 cut(s)	67
BspLI	GGNNCC	2 cut(s)	162, 400
BspMAI	CTGCAG	1 cut(s)	747
BspPI	GGATC	2 cut(s)	155, 168
BsrFI	RCCGGY	1 cut(s)	272
BsrI	ACTGG	2 cut(s)	298, 482
BssAI	RCCGGY	1 cut(s)	272
BssECI	CCNNGG	1 cut(s)	395
BssMI	GATC	2 cut(s)	160, 832
BssNI	GRCGYC	1 cut(s)	72
Bst2UI	CCWGG	4 cut(s)	158, 396, 722, 798
Bst4CI	ACNGT	1 cut(s)	253
Bst6I	CTCTTC	2 cut(s)	238, 681
BstACI	GRCGYC	1 cut(s)	72
BstAPI	GCANNNNNTGC	1 cut(s)	57
BstC8I	GCNNGC	2 cut(s)	12, 274
BstDEI	CTNAG	2 cut(s)	240, 312
BstEII	GGTNACC	1 cut(s)	691
BstENI	CCTNNNNNAGG	3 cut(s)	127, 311, 548
BstF5I	GGATG	5 cut(s)	119, 150, 213, 511, 607
BstHHI	GCGC	2 cut(s)	102, 511
BstKTI	GATC	2 cut(s)	163, 835
BstMBI	GATC	2 cut(s)	160, 832
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 57, 60, 278
BstNI	CCWGG	4 cut(s)	158, 396, 722, 798
BstPI	GGTNACC	1 cut(s)	691
BstSCI	CCNGG	4 cut(s)	156, 394, 720, 796
BstSFI	CTRYAG	1 cut(s)	743
BstSLI	GKGCMC	1 cut(s)	664
BstV1I	GCAGC	4 cut(s)	60, 63, 93, 604
BstX2I	RGATCY	1 cut(s)	160
BstYI	RGATCY	1 cut(s)	160
BsuRI	GGCC	2 cut(s)	133, 734
BtsCI	GGATG	5 cut(s)	119, 150, 213, 511, 607
BtsI	GCAGTG	1 cut(s)	111
BtsIMutI	CAGTG	2 cut(s)	111, 489
Cac8I	GCNNGC	2 cut(s)	12, 274
CaiI	CAGNNNCTG	1 cut(s)	57
CciI	TCATGA	1 cut(s)	67
CfoI	GCGC	2 cut(s)	102, 511
Cfr10I	RCCGGY	1 cut(s)	272
Cfr13I	GGNCC	3 cut(s)	132, 399, 794
CseI	GACGC	1 cut(s)	180
CviAII	CATG	2 cut(s)	68, 489
DdeI	CTNAG	2 cut(s)	240, 312
DpnI	GATC	2 cut(s)	162, 834
DpnII	GATC	2 cut(s)	160, 832
Eam1104I	CTCTTC	2 cut(s)	238, 681
EarI	CTCTTC	2 cut(s)	238, 681
Eco24I	GRGCYC	1 cut(s)	181
Eco47I	GGWCC	2 cut(s)	399, 794
Eco57I	CTGAAG	1 cut(s)	831
Eco91I	GGTNACC	1 cut(s)	691
EcoNI	CCTNNNNNAGG	3 cut(s)	127, 311, 548
EcoO65I	GGTNACC	1 cut(s)	691
EcoRII	CCWGG	4 cut(s)	156, 394, 720, 796
EcoT38I	GRGCYC	1 cut(s)	181
FaeI	CATG	2 cut(s)	71, 492
FalI	AAGNNNNNCTT	2 cut(s)	834, 866
FatI	CATG	2 cut(s)	67, 488
Fnu4HI	GCNGC	8 cut(s)	49, 52, 61, 82, 85, 225, 270, 593
FokI	GGATG	5 cut(s)	106, 137, 200, 518, 614
FriOI	GRGCYC	1 cut(s)	181
Fsp4HI	GCNGC	8 cut(s)	49, 52, 61, 82, 85, 225, 270, 593
FspBI	CTAG	1 cut(s)	716
GlaI	GCGC	2 cut(s)	101, 510
GluI	GCNGC	8 cut(s)	49, 52, 61, 82, 85, 225, 270, 593
HaeIII	GGCC	2 cut(s)	133, 734
HapII	CCGG	2 cut(s)	273, 696
HgaI	GACGC	1 cut(s)	180
HhaI	GCGC	2 cut(s)	102, 511
Hin1I	GRCGYC	1 cut(s)	72
Hin1II	CATG	2 cut(s)	71, 492
Hin6I	GCGC	2 cut(s)	100, 509
HinP1I	GCGC	2 cut(s)	100, 509
HincII	GTYRAC	1 cut(s)	76
HindII	GTYRAC	1 cut(s)	76
HinfI	GANTC	3 cut(s)	230, 618, 801
HpaII	CCGG	2 cut(s)	273, 696
HphI	GGTGA	5 cut(s)	130, 247, 565, 685, 876
Hpy166II	GTNNAC	3 cut(s)	76, 662, 780
Hpy188I	TCNGA	6 cut(s)	374, 403, 654, 754, 794, 848
Hpy188III	TCNNGA	5 cut(s)	68, 190, 217, 290, 683
Hpy8I	GTNNAC	3 cut(s)	76, 662, 780
Hpy99I	CGWCG	1 cut(s)	296
HpyAV	CCTTC	4 cut(s)	255, 401, 814, 885
HpyCH4III	ACNGT	1 cut(s)	253
HpyCH4IV	ACGT	1 cut(s)	72
HpyCH4V	TGCA	7 cut(s)	32, 38, 443, 470, 662, 745, 881
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 57, 60, 278
HpyF3I	CTNAG	2 cut(s)	240, 312
HpySE526I	ACGT	1 cut(s)	72
Hsp92I	GRCGYC	1 cut(s)	72
Hsp92II	CATG	2 cut(s)	71, 492
HspAI	GCGC	2 cut(s)	100, 509
KroI	GCCGGC	1 cut(s)	272
KroNI	GCCGGC	1 cut(s)	274
Kzo9I	GATC	2 cut(s)	160, 832
LmnI	GCTCC	2 cut(s)	59, 374
Lsp1109I	GCAGC	4 cut(s)	60, 63, 93, 604
LweI	GCATC	3 cut(s)	408, 496, 890
MaeI	CTAG	1 cut(s)	716
MaeII	ACGT	1 cut(s)	72
MaeIII	GTNAC	3 cut(s)	253, 565, 691
MalI	GATC	2 cut(s)	162, 834
MboI	GATC	2 cut(s)	160, 832
MboII	GAAGA	4 cut(s)	225, 613, 698, 781
MflI	RGATCY	1 cut(s)	160
MhlI	GDGCHC	2 cut(s)	181, 664
MluCI	AATT	2 cut(s)	515, 645
MlyI	GAGTC	1 cut(s)	224
MmeI	TCCRAC	4 cut(s)	50, 871, 882, 888
MroNI	GCCGGC	1 cut(s)	272
MseI	TTAA	3 cut(s)	384, 518, 774
MslI	CAYNNNNRTG	2 cut(s)	452, 600
MspA1I	CMGCKG	1 cut(s)	809
MspI	CCGG	2 cut(s)	273, 696
MspR9I	CCNGG	4 cut(s)	158, 396, 722, 798
MvaI	CCWGG	4 cut(s)	158, 396, 722, 798
MwoI	GCNNNNNNNGC	4 cut(s)	11, 57, 60, 278
NaeI	GCCGGC	1 cut(s)	274
NdeII	GATC	2 cut(s)	160, 832
NgoMIV	GCCGGC	1 cut(s)	272
NlaIII	CATG	2 cut(s)	71, 492
NlaIV	GGNNCC	2 cut(s)	162, 400
NmuCI	GTSAC	2 cut(s)	253, 691
PagI	TCATGA	1 cut(s)	67
PcsI	WCGNNNNNNNCGW	1 cut(s)	291
PdiI	GCCGGC	1 cut(s)	274
PfeI	GAWTC	2 cut(s)	618, 801
PkrI	GCNGC	8 cut(s)	50, 53, 62, 83, 86, 226, 271, 594
PleI	GAGTC	1 cut(s)	224
PpsI	GAGTC	1 cut(s)	224
PsiI	TTATAA	1 cut(s)	892
Psp6I	CCWGG	4 cut(s)	156, 394, 720, 796
PspEI	GGTNACC	1 cut(s)	691
PspGI	CCWGG	4 cut(s)	156, 394, 720, 796
PspN4I	GGNNCC	2 cut(s)	162, 400
PspPI	GGNCC	3 cut(s)	132, 399, 794
PstI	CTGCAG	1 cut(s)	747
PstNI	CAGNNNCTG	1 cut(s)	57
PsuI	RGATCY	1 cut(s)	160
PvuII	CAGCTG	1 cut(s)	809
RseI	CAYNNNNRTG	2 cut(s)	452, 600
SaqAI	TTAA	3 cut(s)	384, 518, 774
SatI	GCNGC	8 cut(s)	49, 52, 61, 82, 85, 225, 270, 593
Sau3AI	GATC	2 cut(s)	160, 832
Sau96I	GGNCC	3 cut(s)	132, 399, 794
SchI	GAGTC	1 cut(s)	224
ScrFI	CCNGG	4 cut(s)	158, 396, 722, 798
SduI	GDGCHC	2 cut(s)	181, 664
SfaNI	GCATC	3 cut(s)	408, 496, 890
SfcI	CTRYAG	1 cut(s)	743
SinI	GGWCC	2 cut(s)	399, 794
SmiMI	CAYNNNNRTG	2 cut(s)	452, 600
Sse9I	AATT	2 cut(s)	515, 645
SsiI	CCGC	5 cut(s)	61, 79, 85, 225, 270
SspMI	CTAG	1 cut(s)	716
StyD4I	CCNGG	4 cut(s)	156, 394, 720, 796
TaaI	ACNGT	1 cut(s)	253
TaiI	ACGT	1 cut(s)	75
TasI	AATT	2 cut(s)	515, 645
TauI	GCSGC	4 cut(s)	63, 87, 227, 272
TfiI	GAWTC	2 cut(s)	618, 801
Tru1I	TTAA	3 cut(s)	384, 518, 774
Tru9I	TTAA	3 cut(s)	384, 518, 774
TscAI	CASTG	2 cut(s)	118, 489
TseFI	GTSAC	2 cut(s)	253, 691
TseI	GCWGC	4 cut(s)	48, 51, 81, 592
Tsp45I	GTSAC	2 cut(s)	253, 691
TspDTI	ATGAA	1 cut(s)	774
TspRI	CASTG	2 cut(s)	118, 489
VneI	GTGCAC	1 cut(s)	660
VpaK11BI	GGWCC	2 cut(s)	399, 794
XagI	CCTNNNNNAGG	3 cut(s)	127, 311, 548
XspI	CTAG	1 cut(s)	716
ZraI	GACGTC	1 cut(s)	73

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.