Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0009703

Physical Location & Seq

Genomic Coordinates Reverse (-)

34825717 .. 34831733

Gene Structure 6017 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g45360.t5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1341 bp

ATGGTGGTTGTCCAAGCCTCCAAGCTCCGCCTCCCCTCCTCCTCCACTCACGTCACCTCCCTCCTCTTCGAGCCCACCTCTCTCTCTCTAGCCCTCACTCACTCCGACTCCTCTTTCTCTCTCTACCCTTCTCTCTCCTCCTCCCCTCTTTCTCTCTCTTCCCTCCCTCCTCCCCAAACCCTAGTCCTCCCCCCTTCCTCCTCCGCCGCCTTCCTCCTCCTCCGAAACCCCAACAGGGTCCTCTTCGTCGTCTCCGGCCCTCACCTGGGTGGGTCCCAAATCCTCCTCAGATTCTATGTCTTGAACAAACAGACCCAATTCGTGAGGGCCCAAGTGGTCTGCACCCAGAAAGATCTCACCTTTGATCCCAAATTGGGGGTTTTGGTGGATTCCAATCATGGGGTTTCGGTTAAGCTTGCTGGGTCTGTCAATTTTTTCGCAATGTATTCGGTTTCGGCATCCAAGATTTGGGTTTTCGCCGTGAAAGATGTTGCTGGTGTGGCTGTGAAGTTGATGAGGTGTGCTGTTATTGATTGCTGCAAGGTTGTGTGGTCCATTAGTGTTTCGTTCGGGTTCTTGATGTTGGGGGAGGATGATGGAGTGAGGGTTTTTAGTCTGAGGCAGCTTGCGAAAGGGCGGGTGAGAAAGTCTAAGCCTACGGCTTTGAATTCGGGTTTGCCGAATGGGGTGATTGGAGACAATGTGGTGCATAGTGAAGCTGGGGATTGTGGAAGTAAGCATGGAAGTGGAAAATGCGAAGAGAGTTGCGGTGGTTACTTGTGCCGGAAGAATGATAGGAATGGTGTCATTGTAAAGCAGAGGTCTGTTAAACTGAAACAAGACTCATGTGAAGAGGGAGTGTGTTTTGCGGCATTCAAGGGCAAGGAGTTGGAAACCTCTAAATCAAGAAGAAGGATACCGGTGAAGGCCATTTCCATTGACGCACTGTCCTCTAACAAATTTTTAATCCTGGACTCAGATGGAGGCTTACAGATTTTGCACCTTTTCAGCCCCGTAATTGGATCAGATATAACTACTTTCTTGCAGCAGTTGCCTAGCACTATGAAAGTGCAAAAGGTGGCTGTTCTTTCTGAAATAGCTGCAAGAACACAATCTGTTTGGGTGTCAGATGGCTACAACTCTGTGCAGATGATGGTGGCATCCGACATGGATATTGCAGTTAGCGGAAATGATTTAAATGAGAGCAAGGAAAAGCCGATGCATATCACAGTTGGTCTCACAATTTTCACTGGGGAAAAGATTCAAGACCTTACTCCATTGGCCGCAAATACTGTTTTGATTCTTGGACAAGGAAACTTGTACACATATGCGACCTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

447

Amino Acids

47.95

Weight (kDa)

9.14

Isoelectric Point (pI)

42.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009703)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g45360 FvH4_6g45360 FvH4_6g45360 FvH4_6g45360 FvH4_6g45360 FvH4_6g45360
malus_domestica	MD09G1084700.v1.1 MD17G1074100.v1.1
prunus_persica	Prupe.3G239800_v2.0.a1
pyrus_communis	pycom06g15940 pycom09g01030 pycom17g07480
rosa_chinensis	RchiOBHm_Chr2g0163141
rosa_laevigata	RLG00000021377
rosa_multiflora	Rmu_sc0002045.1_g000040
rosa_roxburghii	Rroxscaffold_2G00087510
rosa_rugosa	Rorug02G0501000
rosa_samantha	Rh2AG567200 Rh2BG579500 Rh2CG549400 Rh2DG589800
rosa_wichuraiana	Rw2G046970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	468
AciI	CCGC	8 cut(s)	28, 204, 207, 637, 768, 869, 1185, 1284
AclWI	GGATC	2 cut(s)	359, 1030
AcoI	YGGCCR	1 cut(s)	1281
AcsI	RAATTY	2 cut(s)	667, 959
AfaI	GTAC	1 cut(s)	1322
AfiI	CCNNNNNNNGG	8 cut(s)	235, 265, 266, 374, 375, 399, 468, 1019
AgeI	ACCGGT	1 cut(s)	919
AgsI	TTSAA	4 cut(s)	304, 667, 877, 1265
AhdI	GACNNNNNGTC	1 cut(s)	946
AjiI	CACGTC	1 cut(s)	52
AjnI	CCWGG	2 cut(s)	264, 969
AleI	CACNNNNGTG	1 cut(s)	267
AluBI	AGCT	5 cut(s)	25, 415, 625, 719, 1100
AluI	AGCT	5 cut(s)	25, 415, 625, 719, 1100
Alw26I	GTCTC	3 cut(s)	256, 690, 1241
AlwI	GGATC	2 cut(s)	359, 1030
AoxI	GGCC	4 cut(s)	256, 327, 927, 1281
ApaI	GGGCCC	1 cut(s)	331
ApeKI	GCWGC	4 cut(s)	537, 622, 1045, 1100
ApoI	RAATTY	2 cut(s)	667, 959
AsiGI	ACCGGT	1 cut(s)	919
Asp700I	GAANNNNTTC	1 cut(s)	1260
AspS9I	GGNCC	6 cut(s)	238, 257, 273, 327, 328, 552
AsuHPI	GGTGA	6 cut(s)	46, 254, 349, 652, 700, 934
AvaII	GGWCC	3 cut(s)	238, 273, 552
BaeGI	GKGCMC	1 cut(s)	331
BanII	GRGCYC	2 cut(s)	75, 331
BbvI	GCAGC	4 cut(s)	524, 634, 1057, 1087
BccI	CCATC	4 cut(s)	590, 974, 1124, 1147
BceAI	ACGGC	2 cut(s)	464, 675
BcgI	CGANNNNNNTGC	2 cut(s)	429, 463
BciT130I	CCWGG	2 cut(s)	266, 971
BciVI	GTATCC	1 cut(s)	909
BcoDI	GTCTC	3 cut(s)	256, 690, 1241
BfaI	CTAG	3 cut(s)	89, 182, 1056
BfuI	GTATCC	1 cut(s)	909
BglII	AGATCT	1 cut(s)	352
BisI	GCNGC	7 cut(s)	207, 538, 623, 870, 1046, 1101, 1284
BlsI	GCNGC	7 cut(s)	208, 539, 624, 871, 1047, 1102, 1285
Bme1390I	CCNGG	2 cut(s)	266, 971
Bme18I	GGWCC	3 cut(s)	238, 273, 552
BmeRI	GACNNNNNGTC	1 cut(s)	946
BmgBI	CACGTC	1 cut(s)	52
BmgT120I	GGNCC	6 cut(s)	238, 257, 273, 327, 328, 552
BmiI	GGNNCC	4 cut(s)	239, 274, 275, 329
BmrFI	CCNGG	2 cut(s)	266, 971
BmrI	ACTGGG	1 cut(s)	1260
BmsI	GCATC	3 cut(s)	467, 1169, 1209
BmuI	ACTGGG	1 cut(s)	1260
BplI	GAGNNNNNCTC	2 cut(s)	62, 94
BsaBI	GATNNNNATC	2 cut(s)	393, 1223
BsaI	GGTCTC	1 cut(s)	1241
BsaJI	CCNNGG	1 cut(s)	265
BsaWI	WCCGGW	1 cut(s)	919
BsaXI	ACNNNNNCTCC	8 cut(s)	41, 71, 92, 122, 591, 621, 687, 717
Bsc4I	CCNNNNNNNGG	8 cut(s)	235, 265, 266, 374, 375, 399, 468, 1019
Bse118I	RCCGGY	1 cut(s)	919
Bse1I	ACTGG	1 cut(s)	1255
Bse3DI	GCAATG	1 cut(s)	447
Bse8I	GATNNNNATC	2 cut(s)	393, 1223
BseBI	CCWGG	2 cut(s)	266, 971
BseDI	CCNNGG	1 cut(s)	265
BseGI	GGATG	3 cut(s)	458, 598, 1160
BseJI	GATNNNNATC	2 cut(s)	393, 1223
BseLI	CCNNNNNNNGG	8 cut(s)	235, 265, 266, 374, 375, 399, 468, 1019
BseMI	GCAATG	1 cut(s)	447
BseMII	CTCAG	3 cut(s)	301, 608, 990
BseNI	ACTGG	1 cut(s)	1255
BseSI	GKGCMC	1 cut(s)	331
BseXI	GCAGC	4 cut(s)	524, 634, 1057, 1087
BseYI	CCCAGC	2 cut(s)	419, 719
BsgI	GTGCAG	2 cut(s)	325, 1166
BshFI	GGCC	4 cut(s)	258, 329, 929, 1283
BshTI	ACCGGT	1 cut(s)	919
BsiSI	CCGG	3 cut(s)	255, 784, 920
BslFI	GGGAC	1 cut(s)	259
BslI	CCNNNNNNNGG	8 cut(s)	235, 265, 266, 374, 375, 399, 468, 1019
BsmAI	GTCTC	3 cut(s)	256, 690, 1241
BsmBI	CGTCTC	1 cut(s)	256
BsmFI	GGGAC	1 cut(s)	259
BsmI	GAATGC	1 cut(s)	872
BsnI	GGCC	4 cut(s)	258, 329, 929, 1283
Bso31I	GGTCTC	1 cut(s)	1241
Bsp120I	GGGCCC	1 cut(s)	327
Bsp1286I	GDGCHC	2 cut(s)	75, 331
Bsp1407I	TGTACA	1 cut(s)	1320
Bsp143I	GATC	3 cut(s)	352, 364, 1022
BspACI	CCGC	8 cut(s)	28, 204, 207, 637, 768, 869, 1185, 1284
BspANI	GGCC	4 cut(s)	258, 329, 929, 1283
BspCNI	CTCAG	3 cut(s)	300, 609, 989
BspLI	GGNNCC	4 cut(s)	239, 274, 275, 329
BspPI	GGATC	2 cut(s)	359, 1030
BspTNI	GGTCTC	1 cut(s)	1241
BsrDI	GCAATG	1 cut(s)	447
BsrFI	RCCGGY	1 cut(s)	919
BsrGI	TGTACA	1 cut(s)	1320
BsrI	ACTGG	1 cut(s)	1255
BssAI	RCCGGY	1 cut(s)	919
BssECI	CCNNGG	1 cut(s)	265
BssMI	GATC	3 cut(s)	352, 364, 1022
Bst2UI	CCWGG	2 cut(s)	266, 971
Bst4CI	ACNGT	3 cut(s)	948, 1231, 1294
Bst6I	CTCTTC	5 cut(s)	71, 163, 248, 753, 846
BstAPI	GCANNNNNTGC	1 cut(s)	1051
BstAUI	TGTACA	1 cut(s)	1320
BstC8I	GCNNGC	2 cut(s)	417, 627
BstDEI	CTNAG	4 cut(s)	287, 617, 651, 976
BstF5I	GGATG	3 cut(s)	458, 598, 1160
BstKTI	GATC	3 cut(s)	355, 367, 1025
BstMAI	GTCTC	3 cut(s)	256, 690, 1241
BstMBI	GATC	3 cut(s)	352, 364, 1022
BstMWI	GCNNNNNNNGC	2 cut(s)	500, 1051
BstNI	CCWGG	2 cut(s)	266, 971
BstSCI	CCNGG	2 cut(s)	264, 969
BstSLI	GKGCMC	1 cut(s)	331
BstV1I	GCAGC	4 cut(s)	524, 634, 1057, 1087
BstX2I	RGATCY	1 cut(s)	352
BstYI	RGATCY	1 cut(s)	352
BsuI	GTATCC	1 cut(s)	909
BsuRI	GGCC	4 cut(s)	258, 329, 929, 1283
BtrI	CACGTC	1 cut(s)	52
BtsCI	GGATG	3 cut(s)	458, 598, 1160
BtsIMutI	CAGTG	2 cut(s)	944, 1248
Cac8I	GCNNGC	2 cut(s)	417, 627
Cfr10I	RCCGGY	1 cut(s)	919
Cfr13I	GGNCC	6 cut(s)	238, 257, 273, 327, 328, 552
CseI	GACGC	1 cut(s)	950
Csp6I	GTAC	1 cut(s)	1321
CspAI	ACCGGT	1 cut(s)	919
CviAII	CATG	4 cut(s)	398, 740, 846, 1168
CviQI	GTAC	1 cut(s)	1321
DdeI	CTNAG	4 cut(s)	287, 617, 651, 976
DpnI	GATC	3 cut(s)	354, 366, 1024
DpnII	GATC	3 cut(s)	352, 364, 1022
DraI	TTTAAA	1 cut(s)	1197
DriI	GACNNNNNGTC	1 cut(s)	946
EaeI	YGGCCR	1 cut(s)	1281
Eam1104I	CTCTTC	5 cut(s)	71, 163, 248, 753, 846
Eam1105I	GACNNNNNGTC	1 cut(s)	946
EarI	CTCTTC	5 cut(s)	71, 163, 248, 753, 846
EciI	GGCGGA	2 cut(s)	17, 193
Eco24I	GRGCYC	2 cut(s)	75, 331
Eco31I	GGTCTC	1 cut(s)	1241
Eco47I	GGWCC	3 cut(s)	238, 273, 552
EcoO109I	RGGNCCY	3 cut(s)	238, 273, 327
EcoRI	GAATTC	1 cut(s)	667
EcoRII	CCWGG	2 cut(s)	264, 969
EcoT22I	ATGCAT	1 cut(s)	1224
EcoT38I	GRGCYC	2 cut(s)	75, 331
Esp3I	CGTCTC	1 cut(s)	256
FaeI	CATG	4 cut(s)	401, 743, 849, 1171
FaqI	GGGAC	1 cut(s)	259
FatI	CATG	4 cut(s)	397, 739, 845, 1167
FauI	CCCGC	1 cut(s)	630
FauNDI	CATATG	1 cut(s)	1327
Fnu4HI	GCNGC	7 cut(s)	207, 538, 623, 870, 1046, 1101, 1284
FokI	GGATG	3 cut(s)	445, 605, 1147
FriOI	GRGCYC	2 cut(s)	75, 331
Fsp4HI	GCNGC	7 cut(s)	207, 538, 623, 870, 1046, 1101, 1284
FspBI	CTAG	3 cut(s)	89, 182, 1056
GluI	GCNGC	7 cut(s)	207, 538, 623, 870, 1046, 1101, 1284
GsaI	CCCAGC	2 cut(s)	423, 723
HaeIII	GGCC	4 cut(s)	258, 329, 929, 1283
HapII	CCGG	3 cut(s)	255, 784, 920
HgaI	GACGC	1 cut(s)	950
Hin1II	CATG	4 cut(s)	401, 743, 849, 1171
HindIII	AAGCTT	1 cut(s)	413
HinfI	GANTC	7 cut(s)	107, 291, 389, 842, 974, 1261, 1300
HpaII	CCGG	3 cut(s)	255, 784, 920
HphI	GGTGA	6 cut(s)	46, 254, 349, 652, 700, 934
Hpy166II	GTNNAC	1 cut(s)	1323
Hpy188I	TCNGA	9 cut(s)	106, 224, 290, 618, 979, 1027, 1093, 1129, 1165
Hpy188III	TCNNGA	6 cut(s)	301, 322, 577, 906, 1265, 1338
Hpy8I	GTNNAC	1 cut(s)	1323
Hpy99I	CGWCG	1 cut(s)	251
HpyAV	CCTTC	5 cut(s)	138, 204, 220, 906, 919
HpyCH4III	ACNGT	3 cut(s)	948, 1231, 1294
HpyCH4IV	ACGT	1 cut(s)	51
HpyF10VI	GCNNNNNNNGC	2 cut(s)	500, 1051
HpyF3I	CTNAG	4 cut(s)	287, 617, 651, 976
HpySE526I	ACGT	1 cut(s)	51
Hsp92II	CATG	4 cut(s)	401, 743, 849, 1171
KflI	GGGWCCC	1 cut(s)	273
Kzo9I	GATC	3 cut(s)	352, 364, 1022
LmnI	GCTCC	1 cut(s)	30
Lsp1109I	GCAGC	4 cut(s)	524, 634, 1057, 1087
LweI	GCATC	3 cut(s)	467, 1169, 1209
MaeI	CTAG	3 cut(s)	89, 182, 1056
MaeII	ACGT	1 cut(s)	51
MaeIII	GTNAC	2 cut(s)	52, 773
MalI	GATC	3 cut(s)	354, 366, 1024
MboI	GATC	3 cut(s)	352, 364, 1022
MboII	GAAGA	7 cut(s)	58, 150, 235, 770, 799, 863, 921
MflI	RGATCY	1 cut(s)	352
MhlI	GDGCHC	2 cut(s)	75, 331
MluCI	AATT	7 cut(s)	317, 371, 430, 667, 959, 1017, 1242
MlyI	GAGTC	3 cut(s)	101, 836, 968
MmeI	TCCRAC	3 cut(s)	129, 870, 1188
Mph1103I	ATGCAT	1 cut(s)	1224
MroXI	GAANNNNTTC	1 cut(s)	1260
MseI	TTAA	4 cut(s)	411, 828, 965, 1196
MslI	CAYNNNNRTG	2 cut(s)	267, 744
MspI	CCGG	3 cut(s)	255, 784, 920
MspR9I	CCNGG	2 cut(s)	266, 971
Mva1269I	GAATGC	1 cut(s)	872
MvaI	CCWGG	2 cut(s)	266, 971
MwoI	GCNNNNNNNGC	2 cut(s)	500, 1051
NdeI	CATATG	1 cut(s)	1327
NdeII	GATC	3 cut(s)	352, 364, 1022
NlaIII	CATG	4 cut(s)	401, 743, 849, 1171
NlaIV	GGNNCC	4 cut(s)	239, 274, 275, 329
NmuCI	GTSAC	1 cut(s)	52
NsiI	ATGCAT	1 cut(s)	1224
OliI	CACNNNNGTG	1 cut(s)	267
PcsI	WCGNNNNNNNCGW	1 cut(s)	677
PctI	GAATGC	1 cut(s)	872
PdmI	GAANNNNTTC	1 cut(s)	1260
PfeI	GAWTC	4 cut(s)	291, 389, 1261, 1300
PflMI	CCANNNNNTGG	1 cut(s)	468
PfoI	TCCNGGA	1 cut(s)	969
PinAI	ACCGGT	1 cut(s)	919
PkrI	GCNGC	7 cut(s)	208, 539, 624, 871, 1047, 1102, 1285
PleI	GAGTC	3 cut(s)	101, 836, 968
PpsI	GAGTC	3 cut(s)	101, 836, 968
PpuMI	RGGWCCY	2 cut(s)	238, 273
Psp5II	RGGWCCY	2 cut(s)	238, 273
Psp6I	CCWGG	2 cut(s)	264, 969
PspFI	CCCAGC	2 cut(s)	419, 719
PspGI	CCWGG	2 cut(s)	264, 969
PspN4I	GGNNCC	4 cut(s)	239, 274, 275, 329
PspOMI	GGGCCC	1 cut(s)	327
PspPI	GGNCC	6 cut(s)	238, 257, 273, 327, 328, 552
PspPPI	RGGWCCY	2 cut(s)	238, 273
PsuI	RGATCY	1 cut(s)	352
RsaI	GTAC	1 cut(s)	1322
RsaNI	GTAC	1 cut(s)	1321
RseI	CAYNNNNRTG	2 cut(s)	267, 744
SaqAI	TTAA	4 cut(s)	411, 828, 965, 1196
SatI	GCNGC	7 cut(s)	207, 538, 623, 870, 1046, 1101, 1284
Sau3AI	GATC	3 cut(s)	352, 364, 1022
Sau96I	GGNCC	6 cut(s)	238, 257, 273, 327, 328, 552
SchI	GAGTC	3 cut(s)	101, 836, 968
ScrFI	CCNGG	2 cut(s)	266, 971
SduI	GDGCHC	2 cut(s)	75, 331
SfaNI	GCATC	3 cut(s)	467, 1169, 1209
SinI	GGWCC	3 cut(s)	238, 273, 552
SmiI	ATTTAAAT	1 cut(s)	1197
SmiMI	CAYNNNNRTG	2 cut(s)	267, 744
Sse9I	AATT	7 cut(s)	317, 371, 430, 667, 959, 1017, 1242
SsiI	CCGC	8 cut(s)	28, 204, 207, 637, 768, 869, 1185, 1284
SspMI	CTAG	3 cut(s)	89, 182, 1056
StyD4I	CCNGG	2 cut(s)	264, 969
SwaI	ATTTAAAT	1 cut(s)	1197
TaaI	ACNGT	3 cut(s)	948, 1231, 1294
TaiI	ACGT	1 cut(s)	54
TaqI	TCGA	1 cut(s)	69
TasI	AATT	7 cut(s)	317, 371, 430, 667, 959, 1017, 1242
TatI	WGTACW	1 cut(s)	1320
TauI	GCSGC	3 cut(s)	209, 872, 1286
TfiI	GAWTC	4 cut(s)	291, 389, 1261, 1300
Tru1I	TTAA	4 cut(s)	411, 828, 965, 1196
Tru9I	TTAA	4 cut(s)	411, 828, 965, 1196
TscAI	CASTG	2 cut(s)	951, 1255
TseFI	GTSAC	1 cut(s)	52
TseI	GCWGC	4 cut(s)	537, 622, 1045, 1100
Tsp45I	GTSAC	1 cut(s)	52
TspDTI	ATGAA	1 cut(s)	1079
TspRI	CASTG	2 cut(s)	951, 1255
Van91I	CCANNNNNTGG	1 cut(s)	468
VpaK11BI	GGWCC	3 cut(s)	238, 273, 552
XapI	RAATTY	2 cut(s)	667, 959
XmnI	GAANNNNTTC	1 cut(s)	1260
XspI	CTAG	3 cut(s)	89, 182, 1056
Zsp2I	ATGCAT	1 cut(s)	1224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.