Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0009703

Physical Location & Seq

Genomic Coordinates Forward (+)

6014944 .. 6019130

Gene Structure 4187 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1074100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1494 bp

ATGGTAGTTGTCCAAGCTTCCAAGCTCAGCCTCCCAAACCCTTCTCTCTCCTCCCCTCCCCAAATAACTTCCCTCCAGTTTGAACCCCATTCTCTCTCTCTAGCCCTCATGCACTCTGACTCCACTTTTTCTCTCTACCCCTCTCTCTCCTCCCCTCTTTCCCTCTCCTCTCTCCCTCCTCCCCAAACCCTAGTTGCCCCTCCCTCCTCTTCCTCCACCTTCCTCCTCCTCCAAAACCCAGACCCTAACCCCAACACCCGGACCCTCTTCATTGCATCCGGCCCTCACAGAGGTGGGTCCCAGGTCCTGCTCAGGTTCTACATTCTGCAGAATCAGAAACAATTCGTGAGGGCTCAAGTCATTTGCACCCAGAAAGGGATAAAATTTGATGGGAAATTGGGGGTTTTGGTGGATGCCCATCATGGGGTTTCGATTAAGCTTGCCGGGTCGGTCAATTTCTTCGCCATGTACTCCGTTTCGAGCTCAAAGATATCGGTTTTTTCTGTGAAAGTGATTGGTGATGGCGACAATGGTGATGATGGGGCGGTTGTGAAGTTGATGAGGTGTGCTGTGATTGAGTGTTGCAAGCTGGTTTGGTCGATTAGCATTTCGTTTGGGGTCTTGATCTTAGGAGAAGATAATGGAGTTAGGGTTTTTAATTTGAGGCAGCTTGTTAAAGGGCGGGTTCGAAAGGCCAAGACTTTGAGTTCGAGTTTGGAAAATGAGGGCCGAAATTTGGGTTTTCCTAATGGGGTGGTTGGTGATCATGTGCATAGTAATTTGGGGGATTGTGGAAATAAGCAAGGAGGCGACAAATGTGGTTGCGTTGAGGGGAGTTCGGAGATGACTTGCAGTGGTAACTTGTGTGGGAAGAATGATAGGAATTATGTTTCTGGTATTTCTTGTGGCCTAGGACATGGGTGCTACTCATGTAAGCAAGTCAAGCAGAGGTCTGTGAAACTGAAACAAGACTCTTGTGAAGAGGGAGTGTTTTTTGTGGAATTCAAAGGAAAGGAGCTTGAAACCTCAAAATCGAAAAGAGTGATACCAGCTAAGGCACTTTCTATTGAAGCACTGTCCCCCAACAAATTTCTAGTCTTGGATTCTGATGGAGGTTTACGCATTTTGCACCTCTCTAGTCCTATAATTGGATTAGAAATAACTTCTTGTGTGCAGCAGTTGCCTCACATTATGAAAGTGCAAAAGCTGGCTGTTCTTCCTGATATAGATTCAAGAACTCAATATGTGTGGGCATCAGATGGATACAATTCTGTGCAGATGTTGTTGGCATCTCACATGGATATTGCGGAAAATGAGAAAAATAACAGTGAGGAAAAACTGATTCATGTCTCAGTTCTTCTCACAATTTTTGCCAGCGAAAGAATTCAAGATCTTATTCCTATGGCTGCAAATGCTATTTTAATTCTTGGACAAGGTATGCGTTTTTTTTTCTCCTTGTACTTTAGAAATTATTTTGTATGCAATAAGTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

498

Amino Acids

53.98

Weight (kDa)

8.76

Isoelectric Point (pI)

43.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009703)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g45360 FvH4_6g45360 FvH4_6g45360 FvH4_6g45360 FvH4_6g45360 FvH4_6g45360
malus_domestica	MD09G1084700.v1.1 MD17G1074100.v1.1
prunus_persica	Prupe.3G239800_v2.0.a1
pyrus_communis	pycom06g15940 pycom09g01030 pycom17g07480
rosa_chinensis	RchiOBHm_Chr2g0163141
rosa_laevigata	RLG00000021377
rosa_multiflora	Rmu_sc0002045.1_g000040
rosa_roxburghii	Rroxscaffold_2G00087510
rosa_rugosa	Rorug02G0501000
rosa_samantha	Rh2AG567200 Rh2BG579500 Rh2CG549400 Rh2DG589800
rosa_wichuraiana	Rw2G046970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	545, 682, 1307
AcsI	RAATTY	5 cut(s)	383, 733, 1001, 1088, 1383
AfaI	GTAC	2 cut(s)	470, 1460
AfiI	CCNNNNNNNGG	7 cut(s)	258, 290, 375, 423, 424, 736, 1148
AgsI	TTSAA	6 cut(s)	83, 1006, 1022, 1070, 1233, 1388
AjnI	CCWGG	1 cut(s)	300
AleI	CACNNNNGTG	1 cut(s)	291
AluBI	AGCT	9 cut(s)	17, 25, 439, 483, 589, 670, 1018, 1052, 1207
AluI	AGCT	9 cut(s)	17, 25, 439, 483, 589, 670, 1018, 1052, 1207
Alw21I	GWGCWC	1 cut(s)	485
Alw26I	GTCTC	1 cut(s)	1354
AlwNI	CAGNNNCTG	1 cut(s)	307
AoxI	GGCC	4 cut(s)	280, 693, 727, 907
ApeKI	GCWGC	3 cut(s)	667, 1174, 1406
ApoI	RAATTY	5 cut(s)	383, 733, 1001, 1088, 1383
ArsI	GACNNNNNNTTYG	4 cut(s)	691, 723, 1080, 1112
Asp700I	GAANNNNTTC	2 cut(s)	341, 1383
AspA2I	CCTAGG	1 cut(s)	910
AspS9I	GGNCC	5 cut(s)	261, 281, 297, 304, 727
AsuC2I	CCSGG	2 cut(s)	259, 445
AsuHPI	GGTGA	3 cut(s)	530, 545, 773
AsuII	TTCGAA	1 cut(s)	688
AvaII	GGWCC	3 cut(s)	261, 297, 304
AvrII	CCTAGG	1 cut(s)	910
BanII	GRGCYC	2 cut(s)	355, 485
Bbv12I	GWGCWC	1 cut(s)	485
BbvI	GCAGC	3 cut(s)	679, 1186, 1393
BccI	CCATC	6 cut(s)	383, 426, 515, 533, 1103, 1253
BciT130I	CCWGG	1 cut(s)	302
BciVI	GTATCC	1 cut(s)	1256
BclI	TGATCA	1 cut(s)	763
BcnI	CCSGG	2 cut(s)	259, 445
BcoDI	GTCTC	1 cut(s)	1354
BfaI	CTAG	5 cut(s)	101, 191, 911, 1094, 1137
BfmI	CTRYAG	1 cut(s)	326
BfuI	GTATCC	1 cut(s)	1256
BglII	AGATCT	1 cut(s)	1390
BisI	GCNGC	3 cut(s)	668, 1175, 1407
BlnI	CCTAGG	1 cut(s)	910
BlpI	GCTNAGC	1 cut(s)	26
BlsI	GCNGC	3 cut(s)	669, 1176, 1408
Bme1390I	CCNGG	3 cut(s)	259, 302, 445
Bme18I	GGWCC	3 cut(s)	261, 297, 304
BmgT120I	GGNCC	5 cut(s)	261, 281, 297, 304, 727
BmiI	GGNNCC	3 cut(s)	263, 298, 299
BmrFI	CCNGG	3 cut(s)	259, 302, 445
BmsI	GCATC	4 cut(s)	284, 403, 1262, 1298
BpmI	CTGGAG	1 cut(s)	59
Bpu10I	CCTNAGC	2 cut(s)	311, 1053
Bpu1102I	GCTNAGC	1 cut(s)	26
Bpu14I	TTCGAA	1 cut(s)	688
BpuEI	CTTGAG	1 cut(s)	339
BpuMI	CCSGG	2 cut(s)	259, 445
BsaBI	GATNNNNATC	1 cut(s)	417
BsaJI	CCNNGG	2 cut(s)	300, 910
BsaXI	ACNNNNNCTCC	4 cut(s)	104, 134, 636, 666
Bsc4I	CCNNNNNNNGG	7 cut(s)	258, 290, 375, 423, 424, 736, 1148
Bse1I	ACTGG	1 cut(s)	76
Bse3DI	GCAATG	1 cut(s)	270
Bse8I	GATNNNNATC	1 cut(s)	417
BseBI	CCWGG	1 cut(s)	302
BseDI	CCNNGG	2 cut(s)	300, 910
BseGI	GGATG	2 cut(s)	275, 418
BseJI	GATNNNNATC	1 cut(s)	417
BseLI	CCNNNNNNNGG	7 cut(s)	258, 290, 375, 423, 424, 736, 1148
BseMI	GCAATG	1 cut(s)	270
BseMII	CTCAG	3 cut(s)	40, 325, 1365
BseNI	ACTGG	1 cut(s)	76
BseRI	GAGGAG	7 cut(s)	40, 139, 157, 168, 196, 215, 218
BseXI	GCAGC	3 cut(s)	679, 1186, 1393
BsgI	GTGCAG	2 cut(s)	1193, 1295
BshFI	GGCC	4 cut(s)	282, 695, 729, 909
BsiHKAI	GWGCWC	1 cut(s)	485
BsiSI	CCGG	3 cut(s)	259, 279, 444
BslFI	GGGAC	2 cut(s)	283, 1063
BslI	CCNNNNNNNGG	7 cut(s)	258, 290, 375, 423, 424, 736, 1148
BsmAI	GTCTC	1 cut(s)	1354
BsmFI	GGGAC	2 cut(s)	283, 1063
BsnI	GGCC	4 cut(s)	282, 695, 729, 909
Bsp119I	TTCGAA	1 cut(s)	688
Bsp1286I	GDGCHC	2 cut(s)	355, 485
Bsp143I	GATC	3 cut(s)	624, 763, 1390
Bsp1720I	GCTNAGC	1 cut(s)	26
BspACI	CCGC	3 cut(s)	545, 682, 1307
BspANI	GGCC	4 cut(s)	282, 695, 729, 909
BspCNI	CTCAG	3 cut(s)	39, 324, 1364
BspLI	GGNNCC	3 cut(s)	263, 298, 299
BspMAI	CTGCAG	1 cut(s)	330
BspT104I	TTCGAA	1 cut(s)	688
BsrDI	GCAATG	1 cut(s)	270
BsrI	ACTGG	1 cut(s)	76
BssECI	CCNNGG	2 cut(s)	300, 910
BssMI	GATC	3 cut(s)	624, 763, 1390
BssT1I	CCWWGG	1 cut(s)	910
Bst2UI	CCWGG	1 cut(s)	302
Bst4CI	ACNGT	2 cut(s)	1077, 1328
Bst6I	CTCTTC	3 cut(s)	214, 272, 975
BstAPI	GCANNNNNTGC	1 cut(s)	1180
BstBI	TTCGAA	1 cut(s)	688
BstC8I	GCNNGC	4 cut(s)	441, 587, 1209, 1375
BstDEI	CTNAG	5 cut(s)	26, 311, 628, 1053, 1351
BstENI	CCTNNNNNAGG	1 cut(s)	288
BstF5I	GGATG	2 cut(s)	275, 418
BstKTI	GATC	3 cut(s)	627, 766, 1393
BstMAI	GTCTC	1 cut(s)	1354
BstMBI	GATC	3 cut(s)	624, 763, 1390
BstMWI	GCNNNNNNNGC	3 cut(s)	943, 1180, 1412
BstNI	CCWGG	1 cut(s)	302
BstSCI	CCNGG	3 cut(s)	257, 300, 443
BstSFI	CTRYAG	1 cut(s)	326
BstV1I	GCAGC	3 cut(s)	679, 1186, 1393
BstX2I	RGATCY	1 cut(s)	1390
BstYI	RGATCY	1 cut(s)	1390
BsuI	GTATCC	1 cut(s)	1256
BsuRI	GGCC	4 cut(s)	282, 695, 729, 909
BtsCI	GGATG	2 cut(s)	275, 418
BtsI	GCAGTG	1 cut(s)	859
BtsIMutI	CAGTG	3 cut(s)	859, 1073, 1333
Cac8I	GCNNGC	4 cut(s)	441, 587, 1209, 1375
CaiI	CAGNNNCTG	1 cut(s)	307
Cfr13I	GGNCC	5 cut(s)	261, 281, 297, 304, 727
Csp6I	GTAC	2 cut(s)	469, 1459
CspCI	CAANNNNNGTGG	2 cut(s)	1229, 1264
CviAII	CATG	8 cut(s)	109, 422, 466, 767, 917, 930, 1297, 1346
CviQI	GTAC	2 cut(s)	469, 1459
DdeI	CTNAG	5 cut(s)	26, 311, 628, 1053, 1351
DpnI	GATC	3 cut(s)	626, 765, 1392
DpnII	GATC	3 cut(s)	624, 763, 1390
Eam1104I	CTCTTC	3 cut(s)	214, 272, 975
EarI	CTCTTC	3 cut(s)	214, 272, 975
Ecl136II	GAGCTC	1 cut(s)	483
Eco130I	CCWWGG	1 cut(s)	910
Eco24I	GRGCYC	2 cut(s)	355, 485
Eco32I	GATATC	1 cut(s)	492
Eco47I	GGWCC	3 cut(s)	261, 297, 304
Eco53kI	GAGCTC	1 cut(s)	483
EcoICRI	GAGCTC	1 cut(s)	483
EcoNI	CCTNNNNNAGG	1 cut(s)	288
EcoO109I	RGGNCCY	2 cut(s)	297, 304
EcoRI	GAATTC	2 cut(s)	1001, 1383
EcoRII	CCWGG	1 cut(s)	300
EcoRV	GATATC	1 cut(s)	492
EcoT14I	CCWWGG	1 cut(s)	910
EcoT38I	GRGCYC	2 cut(s)	355, 485
ErhI	CCWWGG	1 cut(s)	910
FaeI	CATG	8 cut(s)	112, 425, 469, 770, 920, 933, 1300, 1349
FaqI	GGGAC	2 cut(s)	283, 1063
FatI	CATG	8 cut(s)	108, 421, 465, 766, 916, 929, 1296, 1345
FauI	CCCGC	1 cut(s)	675
FbaI	TGATCA	1 cut(s)	763
Fnu4HI	GCNGC	3 cut(s)	668, 1175, 1407
FokI	GGATG	2 cut(s)	262, 425
FriOI	GRGCYC	2 cut(s)	355, 485
Fsp4HI	GCNGC	3 cut(s)	668, 1175, 1407
FspBI	CTAG	5 cut(s)	101, 191, 911, 1094, 1137
GluI	GCNGC	3 cut(s)	668, 1175, 1407
GsuI	CTGGAG	1 cut(s)	59
HaeIII	GGCC	4 cut(s)	282, 695, 729, 909
HapII	CCGG	3 cut(s)	259, 279, 444
Hin1II	CATG	8 cut(s)	112, 425, 469, 770, 920, 933, 1300, 1349
HindIII	AAGCTT	2 cut(s)	15, 437
HinfI	GANTC	6 cut(s)	119, 331, 971, 1103, 1229, 1342
HpaII	CCGG	3 cut(s)	259, 279, 444
HphI	GGTGA	3 cut(s)	530, 545, 773
Hpy166II	GTNNAC	1 cut(s)	1118
Hpy188I	TCNGA	5 cut(s)	118, 336, 841, 1108, 1258
Hpy188III	TCNNGA	5 cut(s)	346, 622, 1220, 1233, 1388
Hpy8I	GTNNAC	1 cut(s)	1118
HpyAV	CCTTC	2 cut(s)	51, 229
HpyCH4III	ACNGT	2 cut(s)	1077, 1328
HpyF10VI	GCNNNNNNNGC	3 cut(s)	943, 1180, 1412
HpyF3I	CTNAG	5 cut(s)	26, 311, 628, 1053, 1351
Hsp92II	CATG	8 cut(s)	112, 425, 469, 770, 920, 933, 1300, 1349
KflI	GGGWCCC	1 cut(s)	297
Ksp22I	TGATCA	1 cut(s)	763
Kzo9I	GATC	3 cut(s)	624, 763, 1390
LmnI	GCTCC	1 cut(s)	1015
Lsp1109I	GCAGC	3 cut(s)	679, 1186, 1393
LweI	GCATC	4 cut(s)	284, 403, 1262, 1298
MaeI	CTAG	5 cut(s)	101, 191, 911, 1094, 1137
MaeIII	GTNAC	1 cut(s)	857
MalI	GATC	3 cut(s)	626, 765, 1392
MboI	GATC	3 cut(s)	624, 763, 1390
MboII	GAAGA	8 cut(s)	201, 259, 451, 647, 883, 992, 1208, 1349
MflI	RGATCY	1 cut(s)	1390
MhlI	GDGCHC	2 cut(s)	355, 485
MlyI	GAGTC	2 cut(s)	113, 965
MroXI	GAANNNNTTC	2 cut(s)	341, 1383
MseI	TTAA	4 cut(s)	435, 657, 675, 1421
MslI	CAYNNNNRTG	1 cut(s)	291
MspI	CCGG	3 cut(s)	259, 279, 444
MspR9I	CCNGG	3 cut(s)	259, 302, 445
MvaI	CCWGG	1 cut(s)	302
MwoI	GCNNNNNNNGC	3 cut(s)	943, 1180, 1412
NciI	CCSGG	2 cut(s)	259, 445
NdeII	GATC	3 cut(s)	624, 763, 1390
NlaIII	CATG	8 cut(s)	112, 425, 469, 770, 920, 933, 1300, 1349
NlaIV	GGNNCC	3 cut(s)	263, 298, 299
NspV	TTCGAA	1 cut(s)	688
OliI	CACNNNNGTG	1 cut(s)	291
PdmI	GAANNNNTTC	2 cut(s)	341, 1383
PfeI	GAWTC	4 cut(s)	331, 1103, 1229, 1342
PkrI	GCNGC	3 cut(s)	669, 1176, 1408
PleI	GAGTC	2 cut(s)	113, 965
PpsI	GAGTC	2 cut(s)	113, 965
PpuMI	RGGWCCY	2 cut(s)	297, 304
Psp124BI	GAGCTC	1 cut(s)	485
Psp5II	RGGWCCY	2 cut(s)	297, 304
Psp6I	CCWGG	1 cut(s)	300
PspGI	CCWGG	1 cut(s)	300
PspN4I	GGNNCC	3 cut(s)	263, 298, 299
PspPI	GGNCC	5 cut(s)	261, 281, 297, 304, 727
PspPPI	RGGWCCY	2 cut(s)	297, 304
PstI	CTGCAG	1 cut(s)	330
PstNI	CAGNNNCTG	1 cut(s)	307
PsuI	RGATCY	1 cut(s)	1390
RsaI	GTAC	2 cut(s)	470, 1460
RsaNI	GTAC	2 cut(s)	469, 1459
RseI	CAYNNNNRTG	1 cut(s)	291
SacI	GAGCTC	1 cut(s)	485
SaqAI	TTAA	4 cut(s)	435, 657, 675, 1421
SatI	GCNGC	3 cut(s)	668, 1175, 1407
Sau3AI	GATC	3 cut(s)	624, 763, 1390
Sau96I	GGNCC	5 cut(s)	261, 281, 297, 304, 727
SchI	GAGTC	2 cut(s)	113, 965
ScrFI	CCNGG	3 cut(s)	259, 302, 445
SduI	GDGCHC	2 cut(s)	355, 485
SfaNI	GCATC	4 cut(s)	284, 403, 1262, 1298
SfcI	CTRYAG	1 cut(s)	326
SfuI	TTCGAA	1 cut(s)	688
SinI	GGWCC	3 cut(s)	261, 297, 304
SmiMI	CAYNNNNRTG	1 cut(s)	291
SmlI	CTYRAG	1 cut(s)	354
SmoI	CTYRAG	1 cut(s)	354
SsiI	CCGC	3 cut(s)	545, 682, 1307
SspMI	CTAG	5 cut(s)	101, 191, 911, 1094, 1137
SstI	GAGCTC	1 cut(s)	485
StyD4I	CCNGG	3 cut(s)	257, 300, 443
StyI	CCWWGG	1 cut(s)	910
TaaI	ACNGT	2 cut(s)	1077, 1328
TaqI	TCGA	6 cut(s)	431, 479, 599, 688, 710, 1034
TaqII	GACCGA	1 cut(s)	439
TatI	WGTACW	2 cut(s)	468, 1458
TfiI	GAWTC	4 cut(s)	331, 1103, 1229, 1342
Tru1I	TTAA	4 cut(s)	435, 657, 675, 1421
Tru9I	TTAA	4 cut(s)	435, 657, 675, 1421
TscAI	CASTG	3 cut(s)	859, 1080, 1333
TseI	GCWGC	3 cut(s)	667, 1174, 1406
TspDTI	ATGAA	3 cut(s)	259, 1208, 1334
TspGWI	ACGGA	1 cut(s)	463
TspRI	CASTG	3 cut(s)	859, 1080, 1333
VpaK11BI	GGWCC	3 cut(s)	261, 297, 304
XagI	CCTNNNNNAGG	1 cut(s)	288
XapI	RAATTY	5 cut(s)	383, 733, 1001, 1088, 1383
XmaJI	CCTAGG	1 cut(s)	910
XmnI	GAANNNNTTC	2 cut(s)	341, 1383
XspI	CTAG	5 cut(s)	101, 191, 911, 1094, 1137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.