Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0009703

Physical Location & Seq

Genomic Coordinates Forward (+)

823366 .. 827497

Gene Structure 4132 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g01030.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1518 bp

ATGGTAATTGTCCAAGCTTCCAAGCTCAGCCTCCCAAACCCTTCTCTCTCCTCCCCTCCCCAAATAACTTCCCTCCAATTTGAACCCCATTCTCTCTCTCTAGCCCTCATGCACTCTGACTCCACTTTCTCTCTCTACCCCTCTCTCCCCTCCCCTCTTTCCCTCTCCTCCCTCCCTCCTCCCCAAACCCTAATTGCCCCTCCCTCATCATCCTCCACCTTCCTCCTTCTGCAAAACCCTAATTCTAGCCCCAACACCCGGACCCTCTTCATTGCCTCCGGCCCTCACAAAGGTGGGTCCCAGGTCCTGCTCAGGTTCTACATTCTGCAGAACCAGAAGCAATTTGTGAGGGCTCAAGTTGTTTGCACCCAGAAAGGGGTGAAATTTGATGGGAAATTGGGGGTTTTGGTTGATGCCCATCATGGGGTTTCGATTAAGCTTGCCGGGTCCGTCAATTTCTTCGCCATGTACTCAGTTTCGAGCTCAAAGATTTCGGTTTTTGCTGTGAAAGCAGTTGGCGATGACGACAATGGCGATGATGGGGTGGTTGTGAAGTTGATGAGGTGTGCTGTCATTGAGTGTTGCAAGCTCGTTTGGTCGATTAGCATTTCGTTTGGGTTCTTGATCCTAGGAGAAGATAATGGAGTTAGGGTTTTCAACTTGAGGCAGCTTGTTAAAGGGCGTGTTCGAAAGGCCAAGAATTTGAGCTCAAGTTCGAAAAATGAGGGCCGAAATTTGGGCTTGCCTAATGGGGTGATTGGTGACCAAGTGCATAGTGATGTGGGCGATTGTGGAAATAAGCATGGAGGCAGTAAATGTGGTGGCGTTGAGGGGAGTTTGGAGATAATTTGCAGTGGTAACTCATGCGGGAAGAATGATAGGAATTATGTTTCTGTCAAGCAGAGGTGTGTTAAACTGAACCAAGACTCTTGTGAAGAGGGAGTGTGTTTTGTGGAATTCAAGGGAAAGGATTTTGAAACCTCAAAATCGAAAAGAACAATACCAGCAAAGGCAATTTCTATTGAAGCACTGTCCCCCAACAAATTTTTAATCTTGGATTCAGATGGAGGTTTACGCATCTTGCACCTCTCCGGTCCTATAATTGGATCAGAAATAACTTCTTGCGTGCAGCATTTGCCTCACATTATGAAAGTGCAAAAGCTGGCTGTTCTTCCTGATATAGATTCAAGAACTCAATCTGTTTGGGCATCAGATGGATATAATTCTGTGCAGATGATGTTGGCATCTGACGTGGATATTGTGGAAAATGAGAAAAATGACAGTGAGGAAAAGCTGATTCATGTCTCAGTTCTTCTCACAGTTTTTGCCAGTGAAAAAATTCAAGATCTTATTCCTATGGCTGCAAATGCTATTTTGATTCTTGGACAAGGACTTCTGACTTCCGGGCTTAAAGGAGCTCTGCCAGTGCCCTTCTTGTGTTCTTTGATTTCCATGGTCCCTTGCGTTGTCTATATTACCAAAGTCAGGAGCTGCAGTTTCCCCTTTACCCTAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

506

Amino Acids

54.24

Weight (kDa)

8.71

Isoelectric Point (pI)

45.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009703)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g45360 FvH4_6g45360 FvH4_6g45360 FvH4_6g45360 FvH4_6g45360 FvH4_6g45360
malus_domestica	MD09G1084700.v1.1 MD17G1074100.v1.1
prunus_persica	Prupe.3G239800_v2.0.a1
pyrus_communis	pycom06g15940 pycom09g01030 pycom17g07480
rosa_chinensis	RchiOBHm_Chr2g0163141
rosa_laevigata	RLG00000021377
rosa_multiflora	Rmu_sc0002045.1_g000040
rosa_roxburghii	Rroxscaffold_2G00087510
rosa_rugosa	Rorug02G0501000
rosa_samantha	Rh2AG567200 Rh2BG579500 Rh2CG549400 Rh2DG589800
rosa_wichuraiana	Rw2G046970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	867
AclWI	GGATC	2 cut(s)	619, 1114
AcsI	RAATTY	6 cut(s)	383, 700, 733, 956, 1043, 1338
AfaI	GTAC	1 cut(s)	470
AfiI	CCNNNNNNNGG	9 cut(s)	258, 290, 375, 376, 423, 424, 736, 1103, 1485
AgsI	TTSAA	7 cut(s)	83, 658, 961, 977, 1025, 1188, 1343
AjiI	CACGTC	1 cut(s)	1252
AjnI	CCWGG	1 cut(s)	300
AleI	CACNNNNGTG	1 cut(s)	291
Alw21I	GWGCWC	3 cut(s)	485, 710, 1420
Alw26I	GTCTC	1 cut(s)	1309
AlwI	GGATC	2 cut(s)	619, 1114
AlwNI	CAGNNNCTG	2 cut(s)	307, 1491
AoxI	GGCC	3 cut(s)	280, 693, 727
ApeKI	GCWGC	4 cut(s)	667, 1129, 1361, 1491
ApoI	RAATTY	6 cut(s)	383, 700, 733, 956, 1043, 1338
Asp700I	GAANNNNTTC	1 cut(s)	1338
AspA2I	CCTAGG	1 cut(s)	628
AspS9I	GGNCC	8 cut(s)	261, 281, 297, 304, 447, 727, 1094, 1456
AsuC2I	CCSGG	3 cut(s)	259, 445, 1405
AsuHPI	GGTGA	3 cut(s)	391, 766, 773
AsuII	TTCGAA	2 cut(s)	688, 716
AvaII	GGWCC	6 cut(s)	261, 297, 304, 447, 1094, 1456
AvrII	CCTAGG	1 cut(s)	628
BaeGI	GKGCMC	1 cut(s)	1431
BanII	GRGCYC	4 cut(s)	355, 485, 710, 1420
Bbv12I	GWGCWC	3 cut(s)	485, 710, 1420
BbvI	GCAGC	4 cut(s)	679, 1141, 1348, 1478
BccI	CCATC	5 cut(s)	383, 426, 533, 1058, 1208
BciT130I	CCWGG	1 cut(s)	302
BcnI	CCSGG	3 cut(s)	259, 445, 1405
BcoDI	GTCTC	1 cut(s)	1309
BfaI	CTAG	3 cut(s)	101, 246, 629
BfmI	CTRYAG	2 cut(s)	326, 1492
BglII	AGATCT	1 cut(s)	1345
BisI	GCNGC	4 cut(s)	668, 1130, 1362, 1492
BlnI	CCTAGG	1 cut(s)	628
BlpI	GCTNAGC	1 cut(s)	26
BlsI	GCNGC	4 cut(s)	669, 1131, 1363, 1493
Bme1390I	CCNGG	4 cut(s)	259, 302, 445, 1405
Bme18I	GGWCC	6 cut(s)	261, 297, 304, 447, 1094, 1456
BmgBI	CACGTC	1 cut(s)	1252
BmgT120I	GGNCC	8 cut(s)	261, 281, 297, 304, 447, 727, 1094, 1456
BmiI	GGNNCC	5 cut(s)	263, 298, 299, 448, 1458
BmrFI	CCNGG	4 cut(s)	259, 302, 445, 1405
BmsI	GCATC	4 cut(s)	403, 1086, 1217, 1253
Bpu10I	CCTNAGC	1 cut(s)	311
Bpu1102I	GCTNAGC	1 cut(s)	26
Bpu14I	TTCGAA	2 cut(s)	688, 716
BpuEI	CTTGAG	3 cut(s)	339, 682, 694
BpuMI	CCSGG	3 cut(s)	259, 445, 1405
BsaBI	GATNNNNATC	1 cut(s)	417
BsaJI	CCNNGG	3 cut(s)	300, 628, 1452
BsaWI	WCCGGW	1 cut(s)	1091
BsaXI	ACNNNNNCTCC	6 cut(s)	104, 134, 636, 666, 1480, 1510
Bsc4I	CCNNNNNNNGG	9 cut(s)	258, 290, 375, 376, 423, 424, 736, 1103, 1485
Bse1I	ACTGG	2 cut(s)	1329, 1424
Bse3DI	GCAATG	1 cut(s)	270
Bse8I	GATNNNNATC	1 cut(s)	417
BseBI	CCWGG	1 cut(s)	302
BseDI	CCNNGG	3 cut(s)	300, 628, 1452
BseGI	GGATG	1 cut(s)	209
BseJI	GATNNNNATC	1 cut(s)	417
BseLI	CCNNNNNNNGG	9 cut(s)	258, 290, 375, 376, 423, 424, 736, 1103, 1485
BseMI	GCAATG	1 cut(s)	270
BseMII	CTCAG	4 cut(s)	40, 325, 486, 1320
BseNI	ACTGG	2 cut(s)	1329, 1424
BseRI	GAGGAG	3 cut(s)	40, 157, 168
BseSI	GKGCMC	1 cut(s)	1431
BseXI	GCAGC	4 cut(s)	679, 1141, 1348, 1478
BsgI	GTGCAG	2 cut(s)	1148, 1250
BshFI	GGCC	3 cut(s)	282, 695, 729
BsiHKAI	GWGCWC	3 cut(s)	485, 710, 1420
BsiSI	CCGG	5 cut(s)	259, 279, 444, 1092, 1404
BslFI	GGGAC	3 cut(s)	283, 1018, 1442
BslI	CCNNNNNNNGG	9 cut(s)	258, 290, 375, 376, 423, 424, 736, 1103, 1485
BsmAI	GTCTC	1 cut(s)	1309
BsmFI	GGGAC	3 cut(s)	283, 1018, 1442
BsnI	GGCC	3 cut(s)	282, 695, 729
Bsp119I	TTCGAA	2 cut(s)	688, 716
Bsp1286I	GDGCHC	5 cut(s)	355, 485, 710, 1420, 1431
Bsp143I	GATC	3 cut(s)	624, 1106, 1345
Bsp1720I	GCTNAGC	1 cut(s)	26
Bsp19I	CCATGG	1 cut(s)	1452
BspACI	CCGC	1 cut(s)	867
BspANI	GGCC	3 cut(s)	282, 695, 729
BspCNI	CTCAG	4 cut(s)	39, 324, 485, 1319
BspLI	GGNNCC	5 cut(s)	263, 298, 299, 448, 1458
BspMAI	CTGCAG	2 cut(s)	330, 1496
BspPI	GGATC	2 cut(s)	619, 1114
BspT104I	TTCGAA	2 cut(s)	688, 716
BsrDI	GCAATG	1 cut(s)	270
BsrI	ACTGG	2 cut(s)	1329, 1424
BssECI	CCNNGG	3 cut(s)	300, 628, 1452
BssMI	GATC	3 cut(s)	624, 1106, 1345
BssT1I	CCWWGG	2 cut(s)	628, 1452
Bst2UI	CCWGG	1 cut(s)	302
Bst4CI	ACNGT	3 cut(s)	1032, 1283, 1321
Bst6I	CTCTTC	2 cut(s)	272, 930
BstAPI	GCANNNNNTGC	1 cut(s)	1135
BstBI	TTCGAA	2 cut(s)	688, 716
BstC8I	GCNNGC	5 cut(s)	441, 587, 743, 1127, 1164
BstDEI	CTNAG	4 cut(s)	26, 311, 472, 1306
BstDSI	CCRYGG	1 cut(s)	1452
BstEII	GGTNACC	1 cut(s)	761
BstENI	CCTNNNNNAGG	1 cut(s)	288
BstF5I	GGATG	1 cut(s)	209
BstKTI	GATC	3 cut(s)	627, 1109, 1348
BstMAI	GTCTC	1 cut(s)	1309
BstMBI	GATC	3 cut(s)	624, 1106, 1345
BstMWI	GCNNNNNNNGC	3 cut(s)	509, 1135, 1367
BstNI	CCWGG	1 cut(s)	302
BstPI	GGTNACC	1 cut(s)	761
BstSCI	CCNGG	4 cut(s)	257, 300, 443, 1403
BstSFI	CTRYAG	2 cut(s)	326, 1492
BstSLI	GKGCMC	1 cut(s)	1431
BstV1I	GCAGC	4 cut(s)	679, 1141, 1348, 1478
BstX2I	RGATCY	1 cut(s)	1345
BstYI	RGATCY	1 cut(s)	1345
BsuRI	GGCC	3 cut(s)	282, 695, 729
BtgI	CCRYGG	1 cut(s)	1452
BtgZI	GCGATG	2 cut(s)	534, 549
BtrI	CACGTC	1 cut(s)	1252
BtsCI	GGATG	1 cut(s)	209
BtsI	GCAGTG	1 cut(s)	859
BtsIMutI	CAGTG	5 cut(s)	859, 1028, 1288, 1336, 1431
Cac8I	GCNNGC	5 cut(s)	441, 587, 743, 1127, 1164
CaiI	CAGNNNCTG	2 cut(s)	307, 1491
Cfr13I	GGNCC	8 cut(s)	261, 281, 297, 304, 447, 727, 1094, 1456
Csp6I	GTAC	1 cut(s)	469
CviAII	CATG	7 cut(s)	109, 422, 466, 803, 864, 1301, 1453
CviQI	GTAC	1 cut(s)	469
DdeI	CTNAG	4 cut(s)	26, 311, 472, 1306
DpnI	GATC	3 cut(s)	626, 1108, 1347
DpnII	GATC	3 cut(s)	624, 1106, 1345
Eam1104I	CTCTTC	2 cut(s)	272, 930
EarI	CTCTTC	2 cut(s)	272, 930
Ecl136II	GAGCTC	3 cut(s)	483, 708, 1418
Eco130I	CCWWGG	2 cut(s)	628, 1452
Eco24I	GRGCYC	4 cut(s)	355, 485, 710, 1420
Eco47I	GGWCC	6 cut(s)	261, 297, 304, 447, 1094, 1456
Eco53kI	GAGCTC	3 cut(s)	483, 708, 1418
Eco91I	GGTNACC	1 cut(s)	761
EcoICRI	GAGCTC	3 cut(s)	483, 708, 1418
EcoNI	CCTNNNNNAGG	1 cut(s)	288
EcoO109I	RGGNCCY	2 cut(s)	297, 304
EcoO65I	GGTNACC	1 cut(s)	761
EcoRI	GAATTC	1 cut(s)	956
EcoRII	CCWGG	1 cut(s)	300
EcoT14I	CCWWGG	2 cut(s)	628, 1452
EcoT38I	GRGCYC	4 cut(s)	355, 485, 710, 1420
ErhI	CCWWGG	2 cut(s)	628, 1452
FaeI	CATG	7 cut(s)	112, 425, 469, 806, 867, 1304, 1456
FaqI	GGGAC	3 cut(s)	283, 1018, 1442
FatI	CATG	7 cut(s)	108, 421, 465, 802, 863, 1300, 1452
FauI	CCCGC	1 cut(s)	860
Fnu4HI	GCNGC	4 cut(s)	668, 1130, 1362, 1492
FokI	GGATG	1 cut(s)	196
FriOI	GRGCYC	4 cut(s)	355, 485, 710, 1420
Fsp4HI	GCNGC	4 cut(s)	668, 1130, 1362, 1492
FspBI	CTAG	3 cut(s)	101, 246, 629
GluI	GCNGC	4 cut(s)	668, 1130, 1362, 1492
HaeIII	GGCC	3 cut(s)	282, 695, 729
HapII	CCGG	5 cut(s)	259, 279, 444, 1092, 1404
Hin1II	CATG	7 cut(s)	112, 425, 469, 806, 867, 1304, 1456
HindIII	AAGCTT	2 cut(s)	15, 437
HinfI	GANTC	6 cut(s)	119, 926, 1058, 1184, 1297, 1378
HpaII	CCGG	5 cut(s)	259, 279, 444, 1092, 1404
HphI	GGTGA	3 cut(s)	391, 766, 773
Hpy166II	GTNNAC	1 cut(s)	1073
Hpy188I	TCNGA	6 cut(s)	118, 1063, 1111, 1213, 1249, 1398
Hpy188III	TCNNGA	5 cut(s)	622, 1175, 1188, 1343, 1486
Hpy8I	GTNNAC	1 cut(s)	1073
HpyAV	CCTTC	4 cut(s)	51, 229, 236, 1441
HpyCH4III	ACNGT	3 cut(s)	1032, 1283, 1321
HpyCH4IV	ACGT	1 cut(s)	1251
HpyF10VI	GCNNNNNNNGC	3 cut(s)	509, 1135, 1367
HpyF3I	CTNAG	4 cut(s)	26, 311, 472, 1306
HpySE526I	ACGT	1 cut(s)	1251
Hsp92II	CATG	7 cut(s)	112, 425, 469, 806, 867, 1304, 1456
KflI	GGGWCCC	1 cut(s)	297
Kzo9I	GATC	3 cut(s)	624, 1106, 1345
LmnI	GCTCC	2 cut(s)	1415, 1488
Lsp1109I	GCAGC	4 cut(s)	679, 1141, 1348, 1478
LweI	GCATC	4 cut(s)	403, 1086, 1217, 1253
MaeI	CTAG	3 cut(s)	101, 246, 629
MaeII	ACGT	1 cut(s)	1251
MaeIII	GTNAC	2 cut(s)	761, 857
MalI	GATC	3 cut(s)	626, 1108, 1347
MboI	GATC	3 cut(s)	624, 1106, 1345
MboII	GAAGA	7 cut(s)	259, 451, 647, 883, 947, 1163, 1304
MflI	RGATCY	1 cut(s)	1345
MhlI	GDGCHC	5 cut(s)	355, 485, 710, 1420, 1431
MlyI	GAGTC	2 cut(s)	113, 920
MroXI	GAANNNNTTC	1 cut(s)	1338
MseI	TTAA	5 cut(s)	435, 675, 912, 1049, 1410
MslI	CAYNNNNRTG	2 cut(s)	291, 777
MspI	CCGG	5 cut(s)	259, 279, 444, 1092, 1404
MspR9I	CCNGG	4 cut(s)	259, 302, 445, 1405
MvaI	CCWGG	1 cut(s)	302
MwoI	GCNNNNNNNGC	3 cut(s)	509, 1135, 1367
NciI	CCSGG	3 cut(s)	259, 445, 1405
NcoI	CCATGG	1 cut(s)	1452
NdeII	GATC	3 cut(s)	624, 1106, 1345
NlaIII	CATG	7 cut(s)	112, 425, 469, 806, 867, 1304, 1456
NlaIV	GGNNCC	5 cut(s)	263, 298, 299, 448, 1458
NmuCI	GTSAC	1 cut(s)	761
NspV	TTCGAA	2 cut(s)	688, 716
OliI	CACNNNNGTG	1 cut(s)	291
PcsI	WCGNNNNNNNCGW	1 cut(s)	531
PdmI	GAANNNNTTC	1 cut(s)	1338
PfeI	GAWTC	4 cut(s)	1058, 1184, 1297, 1378
PkrI	GCNGC	4 cut(s)	669, 1131, 1363, 1493
PleI	GAGTC	2 cut(s)	113, 920
PpsI	GAGTC	2 cut(s)	113, 920
PpuMI	RGGWCCY	2 cut(s)	297, 304
Psp124BI	GAGCTC	3 cut(s)	485, 710, 1420
Psp5II	RGGWCCY	2 cut(s)	297, 304
Psp6I	CCWGG	1 cut(s)	300
PspEI	GGTNACC	1 cut(s)	761
PspGI	CCWGG	1 cut(s)	300
PspN4I	GGNNCC	5 cut(s)	263, 298, 299, 448, 1458
PspPI	GGNCC	8 cut(s)	261, 281, 297, 304, 447, 727, 1094, 1456
PspPPI	RGGWCCY	2 cut(s)	297, 304
PstI	CTGCAG	2 cut(s)	330, 1496
PstNI	CAGNNNCTG	2 cut(s)	307, 1491
PsuI	RGATCY	1 cut(s)	1345
RsaI	GTAC	1 cut(s)	470
RsaNI	GTAC	1 cut(s)	469
RseI	CAYNNNNRTG	2 cut(s)	291, 777
SacI	GAGCTC	3 cut(s)	485, 710, 1420
SaqAI	TTAA	5 cut(s)	435, 675, 912, 1049, 1410
SatI	GCNGC	4 cut(s)	668, 1130, 1362, 1492
Sau3AI	GATC	3 cut(s)	624, 1106, 1345
Sau96I	GGNCC	8 cut(s)	261, 281, 297, 304, 447, 727, 1094, 1456
SchI	GAGTC	2 cut(s)	113, 920
ScrFI	CCNGG	4 cut(s)	259, 302, 445, 1405
SduI	GDGCHC	5 cut(s)	355, 485, 710, 1420, 1431
SfaNI	GCATC	4 cut(s)	403, 1086, 1217, 1253
SfcI	CTRYAG	2 cut(s)	326, 1492
SfuI	TTCGAA	2 cut(s)	688, 716
SinI	GGWCC	6 cut(s)	261, 297, 304, 447, 1094, 1456
SmiMI	CAYNNNNRTG	2 cut(s)	291, 777
SmlI	CTYRAG	3 cut(s)	354, 661, 709
SmoI	CTYRAG	3 cut(s)	354, 661, 709
SsiI	CCGC	1 cut(s)	867
SspMI	CTAG	3 cut(s)	101, 246, 629
SstI	GAGCTC	3 cut(s)	485, 710, 1420
StyD4I	CCNGG	4 cut(s)	257, 300, 443, 1403
StyI	CCWWGG	2 cut(s)	628, 1452
TaaI	ACNGT	3 cut(s)	1032, 1283, 1321
TaiI	ACGT	1 cut(s)	1254
TaqI	TCGA	6 cut(s)	431, 479, 599, 688, 716, 989
TatI	WGTACW	1 cut(s)	468
TfiI	GAWTC	4 cut(s)	1058, 1184, 1297, 1378
Tru1I	TTAA	5 cut(s)	435, 675, 912, 1049, 1410
Tru9I	TTAA	5 cut(s)	435, 675, 912, 1049, 1410
TscAI	CASTG	5 cut(s)	859, 1035, 1288, 1336, 1431
TseFI	GTSAC	1 cut(s)	761
TseI	GCWGC	4 cut(s)	667, 1129, 1361, 1491
Tsp45I	GTSAC	1 cut(s)	761
TspDTI	ATGAA	3 cut(s)	259, 1163, 1289
TspGWI	ACGGA	1 cut(s)	439
TspRI	CASTG	5 cut(s)	859, 1035, 1288, 1336, 1431
VpaK11BI	GGWCC	6 cut(s)	261, 297, 304, 447, 1094, 1456
XagI	CCTNNNNNAGG	1 cut(s)	288
XapI	RAATTY	6 cut(s)	383, 700, 733, 956, 1043, 1338
XmaJI	CCTAGG	1 cut(s)	628
XmnI	GAANNNNTTC	1 cut(s)	1338
XspI	CTAG	3 cut(s)	101, 246, 629

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.