Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0009703

Physical Location & Seq

Genomic Coordinates Reverse (-)

82266025 .. 82271895

Gene Structure 5871 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG589800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1428 bp

ATGGTTGTTGTCCAAGCCTCCAAGCTCAACCTCCCCTACCCTTCCCTCTCTTCCCCTCACATCACCTCTCTCCTCTTTGAACCCAACTCTCTCTCTCTAGCCCTCATGCACTCTGACTCCTCTTTCTCTCTCTACCCTTCTCTCTCCTCCCCTCTTTCTCTCTCCTCCCTCCCCCCTCCCCAAACCCTAATCCAACCCCCTTCCTCCTCCTCCACTTTCCTCCTCCTTCAAAACCCTAACCCTAACCCTAATCCCAATCCCAGAGTGCTTTTCATTGTCTCAGGGCCTTATAAAGGTGGGTCCCAGGTCCTTCTCAGGTTCTACATTCTGCACAAGCAGACCCAATTTGTGAGGGCCCAAGTGGTTTGCTCTCAGAAAGATCTCAACTTTGATCACAAATTGGGGGTTTTGGTGGATTCTAATCATGGGGTTTCGATTAGGCTTTCTGGGTCTGTCAATTTCTTTGCAATGTATTCGGTTTCCGGCTCCAAGATTTCGGTTTTCGCTGTCAAAGATGTTGGTGGTGATGGGGTGGCTGTGAAATTGATGAGGTGTGCTGTCATTGATTGCTGCAAGCTTGTGTGGTCCATTAGCGTTTCGTTCGGGTTCTTGATTCTGGGGGAAGATGATGGAGTGAGGGTTTTCAATTTGAGGCAGCTTGTGAAAGGGCGGGTTCGAAAGGCTAAGAGTTCGAATTCGAGTTTGAAATTGGGTTTGTTAAATGGGGTGATTGGTGACAATGTGCGAGAAGCTGGGGATTGTGGAAATAAACATGGAAGTGGAAAGTGTGAAGGGACTTGCGATGGTTACTTGTGCCGGAAGAATGATAGGAATTGTGTCTCTGTCAAGCGGAGATCTGTTAAACTGAAACAAGACTCATGTGAAGACGGAGTGTGTTTTGCGGCATTCAAGGGCAAGGAGTTAGAAACCTCTAAATCAAGAAGAAGGATACCAGTGAAGGCAATTTCCATTGACGCACTGTCCCCTAACAAACTTTTAATCCTGGACTCAGATGGAGGTTTACAGCTTTTGCACCTTTCCATCCCTGTAATTGGATCAGATATAACTACTTTCATGCAGCAGTTGCCTAACACTATGAAAGTACAAAAGGTGGCTGTTCTTCCTGAAATAGCTGCAAGAACACAATCTGTTTGGGTGTCAGATGGCTACAATTCTGTGCAGATGATGGTGGCATCTGACATGGATAGTGCAGTTAGCCAAAATGATTTAAATGAGAGCAAGGAAAAGCCGATGCATATCACAGTTGGTCTCACAATTTTTACTGGGGAAAAGATTCAAGACCTTACTCCTTTGGCCGGAAATGCTATTTTGATTCTTGGACAAGGTAACATGTGGTTTCTTCATTTAGAATTACTTTGTAATCTTTGCCTACAAGTGTTGGACTTCCAACAATTGATGAGTTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

475

Amino Acids

51.72

Weight (kDa)

8.94

Isoelectric Point (pI)

43.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009703)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g45360 FvH4_6g45360 FvH4_6g45360 FvH4_6g45360 FvH4_6g45360 FvH4_6g45360
malus_domestica	MD09G1084700.v1.1 MD17G1074100.v1.1
prunus_persica	Prupe.3G239800_v2.0.a1
pyrus_communis	pycom06g15940 pycom09g01030 pycom17g07480
rosa_chinensis	RchiOBHm_Chr2g0163141
rosa_laevigata	RLG00000021377
rosa_multiflora	Rmu_sc0002045.1_g000040
rosa_roxburghii	Rroxscaffold_2G00087510
rosa_rugosa	Rorug02G0501000
rosa_samantha	Rh2AG567200 Rh2BG579500 Rh2CG549400 Rh2DG589800
rosa_wichuraiana	Rw2G046970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	291
AciI	CCGC	3 cut(s)	670, 850, 902
AclWI	GGATC	1 cut(s)	1063
AcoI	YGGCCR	1 cut(s)	1314
AcsI	RAATTY	1 cut(s)	694
AfaI	GTAC	1 cut(s)	1104
AfiI	CCNNNNNNNGG	3 cut(s)	293, 1052, 1316
AflIII	ACRYGT	1 cut(s)	1350
AgsI	TTSAA	6 cut(s)	80, 230, 646, 706, 910, 1298
AhdI	GACNNNNNGTC	1 cut(s)	979
AjnI	CCWGG	2 cut(s)	303, 1002
AluBI	AGCT	6 cut(s)	25, 577, 658, 752, 1027, 1133
AluI	AGCT	6 cut(s)	25, 577, 658, 752, 1027, 1133
Alw26I	GTCTC	3 cut(s)	283, 844, 1274
AlwI	GGATC	1 cut(s)	1063
AoxI	GGCC	3 cut(s)	284, 354, 1314
ApaI	GGGCCC	1 cut(s)	358
ApeKI	GCWGC	4 cut(s)	570, 655, 1078, 1133
ApoI	RAATTY	1 cut(s)	694
Asp700I	GAANNNNTTC	1 cut(s)	1293
AspS9I	GGNCC	6 cut(s)	284, 300, 307, 354, 355, 585
AsuHPI	GGTGA	4 cut(s)	55, 536, 739, 746
AsuII	TTCGAA	2 cut(s)	676, 692
AvaII	GGWCC	3 cut(s)	300, 307, 585
BaeGI	GKGCMC	1 cut(s)	358
BanII	GRGCYC	1 cut(s)	358
BbsI	GAAGAC	1 cut(s)	891
BbvI	GCAGC	4 cut(s)	557, 667, 1090, 1120
BccI	CCATC	7 cut(s)	521, 623, 797, 1007, 1049, 1157, 1180
BcgI	CGANNNNNNTGC	2 cut(s)	456, 490
BciT130I	CCWGG	2 cut(s)	305, 1004
BciVI	GTATCC	1 cut(s)	942
BclI	TGATCA	1 cut(s)	391
BcoDI	GTCTC	3 cut(s)	283, 844, 1274
BfaI	CTAG	1 cut(s)	98
BfuI	GTATCC	1 cut(s)	942
BglII	AGATCT	2 cut(s)	379, 854
BisI	GCNGC	5 cut(s)	571, 656, 903, 1079, 1134
BlsI	GCNGC	5 cut(s)	572, 657, 904, 1080, 1135
Bme1390I	CCNGG	2 cut(s)	305, 1004
Bme18I	GGWCC	3 cut(s)	300, 307, 585
BmeRI	GACNNNNNGTC	1 cut(s)	979
BmgT120I	GGNCC	6 cut(s)	284, 300, 307, 354, 355, 585
BmiI	GGNNCC	4 cut(s)	301, 302, 356, 487
BmrFI	CCNGG	2 cut(s)	305, 1004
BmrI	ACTGGG	1 cut(s)	1293
BmsI	GCATC	2 cut(s)	1202, 1242
BmuI	ACTGGG	1 cut(s)	1293
BpiI	GAAGAC	1 cut(s)	891
Bpu14I	TTCGAA	2 cut(s)	676, 692
BsaBI	GATNNNNATC	2 cut(s)	420, 1256
BsaI	GGTCTC	1 cut(s)	1274
BsaJI	CCNNGG	1 cut(s)	303
BsaXI	ACNNNNNCTCC	4 cut(s)	101, 131, 624, 654
Bsc4I	CCNNNNNNNGG	3 cut(s)	293, 1052, 1316
Bse1I	ACTGG	2 cut(s)	953, 1288
Bse3DI	GCAATG	1 cut(s)	474
Bse8I	GATNNNNATC	2 cut(s)	420, 1256
BseBI	CCWGG	2 cut(s)	305, 1004
BseDI	CCNNGG	1 cut(s)	303
BseGI	GGATG	1 cut(s)	1041
BseJI	GATNNNNATC	2 cut(s)	420, 1256
BseLI	CCNNNNNNNGG	3 cut(s)	293, 1052, 1316
BseMI	GCAATG	1 cut(s)	474
BseMII	CTCAG	4 cut(s)	294, 328, 386, 1023
BseNI	ACTGG	2 cut(s)	953, 1288
BseRI	GAGGAG	7 cut(s)	62, 109, 136, 154, 196, 199, 212
BseSI	GKGCMC	1 cut(s)	358
BseXI	GCAGC	4 cut(s)	557, 667, 1090, 1120
BseYI	CCCAGC	1 cut(s)	752
BsgI	GTGCAG	3 cut(s)	314, 1199, 1230
BshFI	GGCC	3 cut(s)	286, 356, 1316
BsiSI	CCGG	3 cut(s)	483, 817, 1317
BslFI	GGGAC	3 cut(s)	286, 808, 967
BslI	CCNNNNNNNGG	3 cut(s)	293, 1052, 1316
BsmAI	GTCTC	3 cut(s)	283, 844, 1274
BsmFI	GGGAC	3 cut(s)	286, 808, 967
BsmI	GAATGC	1 cut(s)	905
BsnI	GGCC	3 cut(s)	286, 356, 1316
Bso31I	GGTCTC	1 cut(s)	1274
Bsp119I	TTCGAA	2 cut(s)	676, 692
Bsp120I	GGGCCC	1 cut(s)	354
Bsp1286I	GDGCHC	1 cut(s)	358
Bsp143I	GATC	4 cut(s)	379, 391, 854, 1055
BspACI	CCGC	3 cut(s)	670, 850, 902
BspANI	GGCC	3 cut(s)	286, 356, 1316
BspCNI	CTCAG	4 cut(s)	293, 327, 385, 1022
BspLI	GGNNCC	4 cut(s)	301, 302, 356, 487
BspPI	GGATC	1 cut(s)	1063
BspT104I	TTCGAA	2 cut(s)	676, 692
BspTNI	GGTCTC	1 cut(s)	1274
BsrDI	GCAATG	1 cut(s)	474
BsrI	ACTGG	2 cut(s)	953, 1288
BssECI	CCNNGG	1 cut(s)	303
BssMI	GATC	4 cut(s)	379, 391, 854, 1055
Bst2UI	CCWGG	2 cut(s)	305, 1004
Bst4CI	ACNGT	2 cut(s)	981, 1264
Bst6I	CTCTTC	1 cut(s)	55
BstAPI	GCANNNNNTGC	1 cut(s)	1084
BstBI	TTCGAA	2 cut(s)	676, 692
BstC8I	GCNNGC	1 cut(s)	575
BstDEI	CTNAG	5 cut(s)	280, 314, 372, 684, 1009
BstENI	CCTNNNNNAGG	1 cut(s)	291
BstF5I	GGATG	1 cut(s)	1041
BstKTI	GATC	4 cut(s)	382, 394, 857, 1058
BstMAI	GTCTC	3 cut(s)	283, 844, 1274
BstMBI	GATC	4 cut(s)	379, 391, 854, 1055
BstMWI	GCNNNNNNNGC	2 cut(s)	1084, 1322
BstNI	CCWGG	2 cut(s)	305, 1004
BstNSI	RCATGY	1 cut(s)	1354
BstSCI	CCNGG	2 cut(s)	303, 1002
BstSLI	GKGCMC	1 cut(s)	358
BstV1I	GCAGC	4 cut(s)	557, 667, 1090, 1120
BstV2I	GAAGAC	1 cut(s)	891
BstX2I	RGATCY	2 cut(s)	379, 854
BstYI	RGATCY	2 cut(s)	379, 854
BsuI	GTATCC	1 cut(s)	942
BsuRI	GGCC	3 cut(s)	286, 356, 1316
BtgZI	GCGATG	1 cut(s)	816
BtsCI	GGATG	1 cut(s)	1041
BtsIMutI	CAGTG	2 cut(s)	960, 977
Cac8I	GCNNGC	1 cut(s)	575
Cfr13I	GGNCC	6 cut(s)	284, 300, 307, 354, 355, 585
CseI	GACGC	1 cut(s)	983
Csp6I	GTAC	1 cut(s)	1103
CviAII	CATG	7 cut(s)	106, 425, 773, 879, 1075, 1201, 1351
CviQI	GTAC	1 cut(s)	1103
DdeI	CTNAG	5 cut(s)	280, 314, 372, 684, 1009
DpnI	GATC	4 cut(s)	381, 393, 856, 1057
DpnII	GATC	4 cut(s)	379, 391, 854, 1055
DraI	TTTAAA	1 cut(s)	1230
DriI	GACNNNNNGTC	1 cut(s)	979
EaeI	YGGCCR	1 cut(s)	1314
Eam1104I	CTCTTC	1 cut(s)	55
Eam1105I	GACNNNNNGTC	1 cut(s)	979
EarI	CTCTTC	1 cut(s)	55
Eco24I	GRGCYC	1 cut(s)	358
Eco31I	GGTCTC	1 cut(s)	1274
Eco47I	GGWCC	3 cut(s)	300, 307, 585
EcoNI	CCTNNNNNAGG	1 cut(s)	291
EcoO109I	RGGNCCY	4 cut(s)	284, 300, 307, 354
EcoRI	GAATTC	1 cut(s)	694
EcoRII	CCWGG	2 cut(s)	303, 1002
EcoT22I	ATGCAT	1 cut(s)	1257
EcoT38I	GRGCYC	1 cut(s)	358
FaeI	CATG	7 cut(s)	109, 428, 776, 882, 1078, 1204, 1354
FaqI	GGGAC	3 cut(s)	286, 808, 967
FatI	CATG	7 cut(s)	105, 424, 772, 878, 1074, 1200, 1350
FauI	CCCGC	1 cut(s)	663
FbaI	TGATCA	1 cut(s)	391
Fnu4HI	GCNGC	5 cut(s)	571, 656, 903, 1079, 1134
FokI	GGATG	1 cut(s)	1028
FriOI	GRGCYC	1 cut(s)	358
Fsp4HI	GCNGC	5 cut(s)	571, 656, 903, 1079, 1134
FspBI	CTAG	1 cut(s)	98
GluI	GCNGC	5 cut(s)	571, 656, 903, 1079, 1134
GsaI	CCCAGC	1 cut(s)	756
HaeIII	GGCC	3 cut(s)	286, 356, 1316
HapII	CCGG	3 cut(s)	483, 817, 1317
HgaI	GACGC	1 cut(s)	983
Hin1II	CATG	7 cut(s)	109, 428, 776, 882, 1078, 1204, 1354
HindIII	AAGCTT	1 cut(s)	575
HinfI	GANTC	7 cut(s)	116, 416, 613, 875, 1007, 1294, 1333
HpaII	CCGG	3 cut(s)	483, 817, 1317
HphI	GGTGA	4 cut(s)	55, 536, 739, 746
Hpy166II	GTNNAC	1 cut(s)	1022
Hpy188I	TCNGA	6 cut(s)	115, 375, 1012, 1060, 1162, 1198
Hpy188III	TCNNGA	4 cut(s)	610, 939, 1124, 1298
Hpy8I	GTNNAC	1 cut(s)	1022
HpyAV	CCTTC	8 cut(s)	51, 147, 210, 236, 320, 785, 939, 952
HpyCH4III	ACNGT	2 cut(s)	981, 1264
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1084, 1322
HpyF3I	CTNAG	5 cut(s)	280, 314, 372, 684, 1009
Hsp92II	CATG	7 cut(s)	109, 428, 776, 882, 1078, 1204, 1354
KflI	GGGWCCC	1 cut(s)	300
Ksp22I	TGATCA	1 cut(s)	391
Kzo9I	GATC	4 cut(s)	379, 391, 854, 1055
LmnI	GCTCC	1 cut(s)	491
Lsp1109I	GCAGC	4 cut(s)	557, 667, 1090, 1120
LweI	GCATC	2 cut(s)	1202, 1242
MaeI	CTAG	1 cut(s)	98
MaeIII	GTNAC	4 cut(s)	734, 806, 1346, 1421
MalI	GATC	4 cut(s)	381, 393, 856, 1057
MboI	GATC	4 cut(s)	379, 391, 854, 1055
MboII	GAAGA	7 cut(s)	42, 635, 832, 896, 954, 1112, 1352
MfeI	CAATTG	1 cut(s)	1412
MflI	RGATCY	2 cut(s)	379, 854
MhlI	GDGCHC	1 cut(s)	358
MlyI	GAGTC	3 cut(s)	110, 869, 1001
MmeI	TCCRAC	2 cut(s)	217, 1380
Mph1103I	ATGCAT	1 cut(s)	1257
MroXI	GAANNNNTTC	1 cut(s)	1293
MseI	TTAA	4 cut(s)	719, 861, 998, 1229
MslI	CAYNNNNRTG	1 cut(s)	777
MspI	CCGG	3 cut(s)	483, 817, 1317
MspR9I	CCNGG	2 cut(s)	305, 1004
MunI	CAATTG	1 cut(s)	1412
Mva1269I	GAATGC	1 cut(s)	905
MvaI	CCWGG	2 cut(s)	305, 1004
MwoI	GCNNNNNNNGC	2 cut(s)	1084, 1322
NdeII	GATC	4 cut(s)	379, 391, 854, 1055
NlaIII	CATG	7 cut(s)	109, 428, 776, 882, 1078, 1204, 1354
NlaIV	GGNNCC	4 cut(s)	301, 302, 356, 487
NmuCI	GTSAC	1 cut(s)	734
NsiI	ATGCAT	1 cut(s)	1257
NspI	RCATGY	1 cut(s)	1354
NspV	TTCGAA	2 cut(s)	676, 692
PciI	ACATGT	1 cut(s)	1350
PctI	GAATGC	1 cut(s)	905
PdmI	GAANNNNTTC	1 cut(s)	1293
PfeI	GAWTC	4 cut(s)	416, 613, 1294, 1333
PfoI	TCCNGGA	1 cut(s)	1002
PkrI	GCNGC	5 cut(s)	572, 657, 904, 1080, 1135
PleI	GAGTC	3 cut(s)	110, 869, 1001
PpsI	GAGTC	3 cut(s)	110, 869, 1001
PpuMI	RGGWCCY	2 cut(s)	300, 307
PscI	ACATGT	1 cut(s)	1350
PsiI	TTATAA	1 cut(s)	291
Psp5II	RGGWCCY	2 cut(s)	300, 307
Psp6I	CCWGG	2 cut(s)	303, 1002
PspFI	CCCAGC	1 cut(s)	752
PspGI	CCWGG	2 cut(s)	303, 1002
PspN4I	GGNNCC	4 cut(s)	301, 302, 356, 487
PspOMI	GGGCCC	1 cut(s)	354
PspPI	GGNCC	6 cut(s)	284, 300, 307, 354, 355, 585
PspPPI	RGGWCCY	2 cut(s)	300, 307
PsuI	RGATCY	2 cut(s)	379, 854
RsaI	GTAC	1 cut(s)	1104
RsaNI	GTAC	1 cut(s)	1103
RseI	CAYNNNNRTG	1 cut(s)	777
SaqAI	TTAA	4 cut(s)	719, 861, 998, 1229
SatI	GCNGC	5 cut(s)	571, 656, 903, 1079, 1134
Sau3AI	GATC	4 cut(s)	379, 391, 854, 1055
Sau96I	GGNCC	6 cut(s)	284, 300, 307, 354, 355, 585
SchI	GAGTC	3 cut(s)	110, 869, 1001
ScrFI	CCNGG	2 cut(s)	305, 1004
SduI	GDGCHC	1 cut(s)	358
SfaNI	GCATC	2 cut(s)	1202, 1242
SfuI	TTCGAA	2 cut(s)	676, 692
SinI	GGWCC	3 cut(s)	300, 307, 585
SmiI	ATTTAAAT	1 cut(s)	1230
SmiMI	CAYNNNNRTG	1 cut(s)	777
SsiI	CCGC	3 cut(s)	670, 850, 902
SspMI	CTAG	1 cut(s)	98
StyD4I	CCNGG	2 cut(s)	303, 1002
SwaI	ATTTAAAT	1 cut(s)	1230
TaaI	ACNGT	2 cut(s)	981, 1264
TaqI	TCGA	4 cut(s)	434, 676, 692, 698
TatI	WGTACW	1 cut(s)	1102
TauI	GCSGC	1 cut(s)	905
TfiI	GAWTC	4 cut(s)	416, 613, 1294, 1333
Tru1I	TTAA	4 cut(s)	719, 861, 998, 1229
Tru9I	TTAA	4 cut(s)	719, 861, 998, 1229
TscAI	CASTG	2 cut(s)	960, 984
TseFI	GTSAC	1 cut(s)	734
TseI	GCWGC	4 cut(s)	570, 655, 1078, 1133
Tsp45I	GTSAC	1 cut(s)	734
TspDTI	ATGAA	4 cut(s)	262, 1063, 1112, 1352
TspGWI	ACGGA	1 cut(s)	903
TspRI	CASTG	2 cut(s)	960, 984
VpaK11BI	GGWCC	3 cut(s)	300, 307, 585
XagI	CCTNNNNNAGG	1 cut(s)	291
XapI	RAATTY	1 cut(s)	694
XceI	RCATGY	1 cut(s)	1354
XmnI	GAANNNNTTC	1 cut(s)	1293
XspI	CTAG	1 cut(s)	98
Zsp2I	ATGCAT	1 cut(s)	1257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.