Prupe.3G239800_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0009703
Physical Location & Seq
Reverse (-)
23386102 .. 23391304
5203 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G239800.1

Sequence Viewer

Length: 1413 bp
ATGGTTGTTGTCCAAGCTTCAAAGCTCAGGCTCCCCAACCCTTCCCTCTCTTCCCCTAACATAACCTCCCTCCTCTTTGAGCCCCATTCTCTCTCTCTAGCCCTCATGCACTCTGACTCCACTCTCTCTCTCTACCCTTCTATCTCCCCTCTTTCCCTCTCATCTCTCCCTCCTCCTCAAACCCTAATTGCTCCTCCCTCTTCTTCCTCCACCTTCCTCCTCCTCCAAAACCCTAACCCTAACCCCAATACTCGCGTTCTATTCATTGTCTCGGGTCCTTATAGAGGTGGGTCTCAGGTCCTGCTCAGGTTTTATATTTTGCACAAGCAGAAGCAATTTGTGAGAGCTCAAGTTGTTTGCACTCAGAAAGAGCTTCAATTTGATCAGAAATTGGGGGTTTTGGTTGATGCTCACCATGGAGTTTCGATTAAGCTTGCCGGGTCGGTCAATTTCTTCGCCATGTACTCTGTTTCGAGCTCAAAGATTTGGGTTTTCGCTGTGAAATCGATTGATAATGACGATAATGATGATAACGATGGGATGGTTGTGAAGTTGATGAGGTGTGCTGTGATTGAGTGTTGCAAGCTTGTTTGGTCGATTAGCATTTCTTTTGGGTTCTTGATCTTAGGAGAAGATAATGGAGTTAGGGTTTTCAATTTGAGGCAGCTTGTTAAAGGGCGGGTTCGAAAGGCCAAACTTTTGAATTCGAGTTCGAAAACCGAGGGTCGAAATTTGTGTTTGCCTAATGGGGTGATTGGTGACCATGCCCATAGTGATTTGGGGGATAAGGGAAATAAATATGGAGGCGGAAAATTCCATGGCACTTCGGAGATACCTTGCAATGGGGACTTGTGTGGGAAGAACGATAGGAATTATGTTTCTGCCAAGCAGCGGTCAGTTAAATTGAGACAAGACTCACCTGAAGAGGGAGTGTGTTTTGTGACATTCAAGGGCAAGGAGTTTGAAACCTCAAAATCGACAAGAATGATACCAGCTAAGGCAATTTCCATTGAGGCACTGTCCCCCAACAAATTTTTAATCTTGGACTCAAATGGAGCTTTACGCATTTTGCACATCTCCAGCCCTGTACTTGGATCAAATATAACTTCTTACTTGCGGGAGTTGCCTCACATTATGAAAGTGCAAAAGCTGGCTGTTCTTCCTGACATAGCTTCAAGAACTCAATCTGTTTGGGCTTCAGATGGATTCAATTCTGTGCACATGATGTTAGCATCTGACATGGATAATGCGGGTAACGAAAATGATAGAAATGATAGTGAGGAAAAGTTGATTCATATCTCAGTTGTTCTCACAATTTTTGCTAGTGAAAAGATTCAAGATCTTATTCCGTTGGCTGCAAATGCTATTTTGATTCTTGGCCAAGGAAACTTATACACCTATGCGATTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

471

Amino Acids

51.41

Weight (kDa)

8.96

Isoelectric Point (pI)

47.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 255
AciI CCGC 5 cut(s) 679, 807, 892, 1117, 1250
AclWI GGATC 1 cut(s) 1102
AcoI YGGCCR 1 cut(s) 1378
AcsI RAATTY 4 cut(s) 703, 730, 812, 1031
AcuI CTGAAG 2 cut(s) 942, 1182
AfaI GTAC 2 cut(s) 464, 1089
AfiI CCNNNNNNNGG 5 cut(s) 284, 842, 891, 926, 1091
AgsI TTSAA 9 cut(s) 21, 377, 655, 703, 949, 965, 1176, 1210, 1337
Alw21I GWGCWC 3 cut(s) 349, 479, 1221
Alw26I GTCTC 3 cut(s) 274, 297, 901
Alw44I GTGCAC 1 cut(s) 1217
AlwI GGATC 1 cut(s) 1102
AlwNI CAGNNNCTG 1 cut(s) 301
Ama87I CYCGRG 1 cut(s) 271
AoxI GGCC 2 cut(s) 690, 1378
ApaLI GTGCAC 1 cut(s) 1217
ApeKI GCWGC 3 cut(s) 664, 889, 1355
ApoI RAATTY 4 cut(s) 703, 730, 812, 1031
Asp700I GAANNNNTTC 1 cut(s) 1332
AspS9I GGNCC 2 cut(s) 275, 298
AsuC2I CCSGG 1 cut(s) 439
AsuHPI GGTGA 4 cut(s) 404, 763, 770, 909
AsuII TTCGAA 2 cut(s) 685, 713
AvaI CYCGRG 1 cut(s) 271
AvaII GGWCC 2 cut(s) 275, 298
BaeGI GKGCMC 1 cut(s) 1221
BalI TGGCCA 1 cut(s) 1380
BanII GRGCYC 3 cut(s) 84, 349, 479
Bbv12I GWGCWC 3 cut(s) 349, 479, 1221
BbvI GCAGC 3 cut(s) 676, 901, 1342
BccI CCATC 3 cut(s) 530, 535, 1196
BclI TGATCA 1 cut(s) 382
BcnI CCSGG 1 cut(s) 439
BcoDI GTCTC 3 cut(s) 274, 297, 901
BfaI CTAG 2 cut(s) 98, 1323
BglII AGATCT 1 cut(s) 1339
BisI GCNGC 3 cut(s) 665, 890, 1356
BlsI GCNGC 3 cut(s) 666, 891, 1357
Bme1390I CCNGG 1 cut(s) 439
Bme18I GGWCC 2 cut(s) 275, 298
BmeT110I CYCGRG 1 cut(s) 271
BmgT120I GGNCC 2 cut(s) 275, 298
BmiI GGNNCC 2 cut(s) 32, 276
BmrFI CCNGG 1 cut(s) 439
BmsI GCATC 2 cut(s) 397, 1241
BpmI CTGGAG 1 cut(s) 1063
Bpu10I CCTNAGC 3 cut(s) 26, 305, 996
Bpu14I TTCGAA 2 cut(s) 685, 713
BpuEI CTTGAG 1 cut(s) 333
BpuMI CCSGG 1 cut(s) 439
Bsa29I ATCGAT 1 cut(s) 506
BsaBI GATNNNNATC 1 cut(s) 1295
BsaI GGTCTC 1 cut(s) 297
BsaJI CCNNGG 4 cut(s) 415, 720, 817, 1381
BsaXI ACNNNNNCTCC 6 cut(s) 50, 80, 101, 131, 633, 663
Bsc4I CCNNNNNNNGG 5 cut(s) 284, 842, 891, 926, 1091
Bse3DI GCAATG 1 cut(s) 847
Bse8I GATNNNNATC 1 cut(s) 1295
BseCI ATCGAT 1 cut(s) 506
BseDI CCNNGG 4 cut(s) 415, 720, 817, 1381
BseGI GGATG 1 cut(s) 546
BseJI GATNNNNATC 1 cut(s) 1295
BseLI CCNNNNNNNGG 5 cut(s) 284, 842, 891, 926, 1091
BseMI GCAATG 1 cut(s) 847
BseMII CTCAG 5 cut(s) 40, 308, 319, 377, 1314
BseRI GAGGAG 6 cut(s) 62, 162, 165, 183, 209, 212
BseSI GKGCMC 1 cut(s) 1221
BseXI GCAGC 3 cut(s) 676, 901, 1342
Bsh1236I CGCG 1 cut(s) 255
BshFI GGCC 2 cut(s) 692, 1380
BshVI ATCGAT 1 cut(s) 506
BsiHKAI GWGCWC 3 cut(s) 349, 479, 1221
BsiHKCI CYCGRG 1 cut(s) 271
BsiSI CCGG 1 cut(s) 438
BslFI GGGAC 2 cut(s) 860, 1006
BslI CCNNNNNNNGG 5 cut(s) 284, 842, 891, 926, 1091
BsmAI GTCTC 3 cut(s) 274, 297, 901
BsmFI GGGAC 2 cut(s) 860, 1006
BsnI GGCC 2 cut(s) 692, 1380
Bso31I GGTCTC 1 cut(s) 297
BsoBI CYCGRG 1 cut(s) 271
Bsp119I TTCGAA 2 cut(s) 685, 713
Bsp1286I GDGCHC 4 cut(s) 84, 349, 479, 1221
Bsp143I GATC 4 cut(s) 382, 621, 1094, 1339
Bsp19I CCATGG 2 cut(s) 415, 817
BspACI CCGC 5 cut(s) 679, 807, 892, 1117, 1250
BspANI GGCC 2 cut(s) 692, 1380
BspCNI CTCAG 5 cut(s) 39, 307, 318, 376, 1313
BspDI ATCGAT 1 cut(s) 506
BspFNI CGCG 1 cut(s) 255
BspLI GGNNCC 2 cut(s) 32, 276
BspPI GGATC 1 cut(s) 1102
BspT104I TTCGAA 2 cut(s) 685, 713
BspTNI GGTCTC 1 cut(s) 297
BsrDI GCAATG 1 cut(s) 847
BssECI CCNNGG 4 cut(s) 415, 720, 817, 1381
BssMI GATC 4 cut(s) 382, 621, 1094, 1339
BssT1I CCWWGG 3 cut(s) 415, 817, 1381
Bst4CI ACNGT 1 cut(s) 1020
Bst6I CTCTTC 3 cut(s) 55, 205, 918
BstBI TTCGAA 2 cut(s) 685, 713
BstC8I GCNNGC 3 cut(s) 435, 584, 1152
BstDEI CTNAG 7 cut(s) 26, 294, 305, 363, 625, 996, 1300
BstDSI CCRYGG 2 cut(s) 415, 817
BstEII GGTNACC 1 cut(s) 758
BstENI CCTNNNNNAGG 1 cut(s) 282
BstF5I GGATG 1 cut(s) 546
BstFNI CGCG 1 cut(s) 255
BstKTI GATC 4 cut(s) 385, 624, 1097, 1342
BstMAI GTCTC 3 cut(s) 274, 297, 901
BstMBI GATC 4 cut(s) 382, 621, 1094, 1339
BstMWI GCNNNNNNNGC 2 cut(s) 1123, 1361
BstPI GGTNACC 1 cut(s) 758
BstSCI CCNGG 1 cut(s) 437
BstSLI GKGCMC 1 cut(s) 1221
BstUI CGCG 1 cut(s) 255
BstV1I GCAGC 3 cut(s) 676, 901, 1342
BstX2I RGATCY 1 cut(s) 1339
BstYI RGATCY 1 cut(s) 1339
Bsu15I ATCGAT 1 cut(s) 506
BsuRI GGCC 2 cut(s) 692, 1380
BsuTUI ATCGAT 1 cut(s) 506
BtgI CCRYGG 2 cut(s) 415, 817
BtsCI GGATG 1 cut(s) 546
BtsIMutI CAGTG 1 cut(s) 1016
Cac8I GCNNGC 3 cut(s) 435, 584, 1152
CaiI CAGNNNCTG 1 cut(s) 301
Cfr13I GGNCC 2 cut(s) 275, 298
ClaI ATCGAT 1 cut(s) 506
Csp6I GTAC 2 cut(s) 463, 1088
CviAII CATG 7 cut(s) 106, 416, 460, 764, 818, 1222, 1240
CviQI GTAC 2 cut(s) 463, 1088
DdeI CTNAG 7 cut(s) 26, 294, 305, 363, 625, 996, 1300
DpnI GATC 4 cut(s) 384, 623, 1096, 1341
DpnII GATC 4 cut(s) 382, 621, 1094, 1339
EaeI YGGCCR 1 cut(s) 1378
Eam1104I CTCTTC 3 cut(s) 55, 205, 918
EarI CTCTTC 3 cut(s) 55, 205, 918
EciI GGCGGA 1 cut(s) 822
Ecl136II GAGCTC 2 cut(s) 347, 477
Eco130I CCWWGG 3 cut(s) 415, 817, 1381
Eco24I GRGCYC 3 cut(s) 84, 349, 479
Eco31I GGTCTC 1 cut(s) 297
Eco47I GGWCC 2 cut(s) 275, 298
Eco53kI GAGCTC 2 cut(s) 347, 477
Eco57I CTGAAG 2 cut(s) 942, 1182
Eco88I CYCGRG 1 cut(s) 271
Eco91I GGTNACC 1 cut(s) 758
EcoICRI GAGCTC 2 cut(s) 347, 477
EcoNI CCTNNNNNAGG 1 cut(s) 282
EcoO109I RGGNCCY 2 cut(s) 275, 298
EcoO65I GGTNACC 1 cut(s) 758
EcoRI GAATTC 1 cut(s) 703
EcoT14I CCWWGG 3 cut(s) 415, 817, 1381
EcoT38I GRGCYC 3 cut(s) 84, 349, 479
ErhI CCWWGG 3 cut(s) 415, 817, 1381
FaeI CATG 7 cut(s) 109, 419, 463, 767, 821, 1225, 1243
FaqI GGGAC 2 cut(s) 860, 1006
FatI CATG 7 cut(s) 105, 415, 459, 763, 817, 1221, 1239
FauI CCCGC 3 cut(s) 672, 1110, 1243
FbaI TGATCA 1 cut(s) 382
Fnu4HI GCNGC 3 cut(s) 665, 890, 1356
FokI GGATG 1 cut(s) 553
FriOI GRGCYC 3 cut(s) 84, 349, 479
Fsp4HI GCNGC 3 cut(s) 665, 890, 1356
FspBI CTAG 2 cut(s) 98, 1323
GluI GCNGC 3 cut(s) 665, 890, 1356
GsuI CTGGAG 1 cut(s) 1063
HaeIII GGCC 2 cut(s) 692, 1380
HapII CCGG 1 cut(s) 438
Hin1II CATG 7 cut(s) 109, 419, 463, 767, 821, 1225, 1243
HindIII AAGCTT 3 cut(s) 15, 431, 584
HinfI GANTC 7 cut(s) 116, 914, 1046, 1206, 1291, 1333, 1372
HpaII CCGG 1 cut(s) 438
HphI GGTGA 4 cut(s) 404, 763, 770, 909
Hpy166II GTNNAC 1 cut(s) 1219
Hpy188I TCNGA 6 cut(s) 115, 366, 387, 829, 1201, 1237
Hpy188III TCNNGA 5 cut(s) 619, 1163, 1176, 1337, 1410
Hpy8I GTNNAC 1 cut(s) 1219
HpyAV CCTTC 3 cut(s) 51, 147, 223
HpyCH4III ACNGT 1 cut(s) 1020
HpyCH4V TGCA 9 cut(s) 109, 322, 360, 582, 840, 1072, 1144, 1219, 1358
HpyF10VI GCNNNNNNNGC 2 cut(s) 1123, 1361
HpyF3I CTNAG 7 cut(s) 26, 294, 305, 363, 625, 996, 1300
Hsp92II CATG 7 cut(s) 109, 419, 463, 767, 821, 1225, 1243
Ksp22I TGATCA 1 cut(s) 382
Kzo9I GATC 4 cut(s) 382, 621, 1094, 1339
LmnI GCTCC 3 cut(s) 36, 196, 1055
Lsp1109I GCAGC 3 cut(s) 676, 901, 1342
LweI GCATC 2 cut(s) 397, 1241
MaeI CTAG 2 cut(s) 98, 1323
MaeIII GTNAC 3 cut(s) 758, 940, 1253
MalI GATC 4 cut(s) 384, 623, 1096, 1341
MboI GATC 4 cut(s) 382, 621, 1094, 1339
MboII GAAGA 8 cut(s) 42, 192, 195, 445, 644, 871, 935, 1151
MflI RGATCY 1 cut(s) 1339
MhlI GDGCHC 4 cut(s) 84, 349, 479, 1221
MlsI TGGCCA 1 cut(s) 1380
MluNI TGGCCA 1 cut(s) 1380
MlyI GAGTC 3 cut(s) 110, 908, 1040
Mox20I TGGCCA 1 cut(s) 1380
MroXI GAANNNNTTC 1 cut(s) 1332
MscI TGGCCA 1 cut(s) 1380
MseI TTAA 4 cut(s) 429, 672, 900, 1037
Msp20I TGGCCA 1 cut(s) 1380
MspA1I CMGCKG 1 cut(s) 892
MspI CCGG 1 cut(s) 438
MspR9I CCNGG 1 cut(s) 439
MvnI CGCG 1 cut(s) 255
MwoI GCNNNNNNNGC 2 cut(s) 1123, 1361
NciI CCSGG 1 cut(s) 439
NcoI CCATGG 2 cut(s) 415, 817
NdeII GATC 4 cut(s) 382, 621, 1094, 1339
NlaIII CATG 7 cut(s) 109, 419, 463, 767, 821, 1225, 1243
NlaIV GGNNCC 2 cut(s) 32, 276
NmuCI GTSAC 2 cut(s) 758, 940
NspV TTCGAA 2 cut(s) 685, 713
PdmI GAANNNNTTC 1 cut(s) 1332
PfeI GAWTC 4 cut(s) 1206, 1291, 1333, 1372
PkrI GCNGC 3 cut(s) 666, 891, 1357
PleI GAGTC 3 cut(s) 110, 908, 1040
PpsI GAGTC 3 cut(s) 110, 908, 1040
PpuMI RGGWCCY 2 cut(s) 275, 298
Psp124BI GAGCTC 2 cut(s) 349, 479
Psp5II RGGWCCY 2 cut(s) 275, 298
PspEI GGTNACC 1 cut(s) 758
PspN4I GGNNCC 2 cut(s) 32, 276
PspPI GGNCC 2 cut(s) 275, 298
PspPPI RGGWCCY 2 cut(s) 275, 298
PstNI CAGNNNCTG 1 cut(s) 301
PsuI RGATCY 1 cut(s) 1339
RsaI GTAC 2 cut(s) 464, 1089
RsaNI GTAC 2 cut(s) 463, 1088
SacI GAGCTC 2 cut(s) 349, 479
SaqAI TTAA 4 cut(s) 429, 672, 900, 1037
SatI GCNGC 3 cut(s) 665, 890, 1356
Sau3AI GATC 4 cut(s) 382, 621, 1094, 1339
Sau96I GGNCC 2 cut(s) 275, 298
SchI GAGTC 3 cut(s) 110, 908, 1040
ScrFI CCNGG 1 cut(s) 439
SduI GDGCHC 4 cut(s) 84, 349, 479, 1221
SfaNI GCATC 2 cut(s) 397, 1241
SfuI TTCGAA 2 cut(s) 685, 713
SinI GGWCC 2 cut(s) 275, 298
SmlI CTYRAG 1 cut(s) 348
SmoI CTYRAG 1 cut(s) 348
SsiI CCGC 5 cut(s) 679, 807, 892, 1117, 1250
SspMI CTAG 2 cut(s) 98, 1323
SstI GAGCTC 2 cut(s) 349, 479
StyD4I CCNGG 1 cut(s) 437
StyI CCWWGG 3 cut(s) 415, 817, 1381
TaaI ACNGT 1 cut(s) 1020
TaqI TCGA 9 cut(s) 425, 473, 506, 596, 685, 707, 713, 727, 977
TaqII GACCGA 1 cut(s) 433
TatI WGTACW 2 cut(s) 462, 1087
TfiI GAWTC 4 cut(s) 1206, 1291, 1333, 1372
Tru1I TTAA 4 cut(s) 429, 672, 900, 1037
Tru9I TTAA 4 cut(s) 429, 672, 900, 1037
TscAI CASTG 1 cut(s) 1023
TseFI GTSAC 2 cut(s) 758, 940
TseI GCWGC 3 cut(s) 664, 889, 1355
Tsp45I GTSAC 2 cut(s) 758, 940
TspDTI ATGAA 3 cut(s) 253, 1151, 1283
TspGWI ACGGA 1 cut(s) 1338
TspRI CASTG 1 cut(s) 1023
VneI GTGCAC 1 cut(s) 1217
VpaK11BI GGWCC 2 cut(s) 275, 298
XagI CCTNNNNNAGG 1 cut(s) 282
XapI RAATTY 4 cut(s) 703, 730, 812, 1031
XmnI GAANNNNTTC 1 cut(s) 1332
XspI CTAG 2 cut(s) 98, 1323
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.