Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0009703

Physical Location & Seq

Genomic Coordinates Reverse (-)

74380056 .. 74385250

Gene Structure 5195 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G046970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1293 bp

ATGGTTGTTGTCCAAGCCTCCAAGCTCAACCTCCCCTACCCTTCCCTCTCTTCCCCTCACATCACCTCTCTCCTCTTTGAACCCAACTCTCTCTCTCTAGCCCTCATGCACTCTGACTCCTCTTTCTCTCTCTACCCTTCTCTCTCCTCCCCTCTTTCTCTCTCCTCCCTCCCCCCTCCCCAAACCCTAATCCACCCCCCTTCCTCCTCCTCCACTTTCCTCCTCCTTCAAAACCCTAATCCCAATCCCAGAGTGCTTTTCATTGTCTCAGGGCCTTATAAAGGTGGGTCCCAGGTCCTTCTCAGGTTCTATATTCTGCACAAGCAGACCCAATTTGTGAGGGCCCAAGTGGTTTGCTCTCAGAAAGATCTCAACTTTGATCACAAATTGGGCGTTTTGGTGGATTCTAATCATGGGGTTTCGATTAGGCTTTCTGGGTCTGTCAATTTCTTTGCAATGTATTCGGTTTCCGGTTCCAAGATTTCGGTTTTCGCTGTCAAAGATGTTGGTGCTGATGGGGTGGCTGTGAAATTGATGAGGTGTGCTGTCATTGATTGCTGCAAGCTTGTGTGGTCCATTAGCGTTTCGTTCGGGTTCTTGATTCTGGGGGAAGATGATGGAGTGAGGGTTTTCAATTTGAGGCAGCTTGTGAAAGGGCGGGTTCGAAAGGCTAAGAGTTCGAATTCGAGTTTGAAATTGGGTTTGTTTAATGGGTTGATTGGTGACAATGTGCGAGAAGCTGGGGATTGTGGAAATAAACATGGAAGTGGAAAGTGTGAAGGGACTTGCGATGGTTACTTGTGCCGGAAGAATGATAGGAATTGTGTCTCTGTCAAGCGGAGATCTGTTAAACTGAAACAAGACTCATGTGAAGACGGAGTGTGTTTTGCGGCATTCAAGGGCAAGGAGTTAGAAACCTCTAAATCAAGAAGAAGGATACCAGTGAAGGCAATTTCCATTGACGCACTGTCCCCTAACAAACTTTTAATCCTGGACTCAGATGGAGGTTTACAGCTTTTGCACCTTTCCATCCCTGTAATTGGATCAGATATAACTACTTTCATGCAGCAGTTGCCTAACACTATGAAAGTGCAAAAGGTGGCTGTTCTTCCTGAAATAGCTGCAAGAACACAATCTGTTTGGGTGTCAGATGGCTACAATTCTGTGCAGATGATGGTGGCATCTGACATGGATAGTGCAGTTAGCCAAAATGATTTAAATGAGAGCAAGGAAAAGCCGATGCATATCACAGGTTCTCATTGGACCATAAATTGCTTTTTAAGTTTAATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

430

Amino Acids

46.81

Weight (kDa)

9.19

Isoelectric Point (pI)

43.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009703)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g45360 FvH4_6g45360 FvH4_6g45360 FvH4_6g45360 FvH4_6g45360 FvH4_6g45360
malus_domestica	MD09G1084700.v1.1 MD17G1074100.v1.1
prunus_persica	Prupe.3G239800_v2.0.a1
pyrus_communis	pycom06g15940 pycom09g01030 pycom17g07480
rosa_chinensis	RchiOBHm_Chr2g0163141
rosa_laevigata	RLG00000021377
rosa_multiflora	Rmu_sc0002045.1_g000040
rosa_roxburghii	Rroxscaffold_2G00087510
rosa_rugosa	Rorug02G0501000
rosa_samantha	Rh2AG567200 Rh2BG579500 Rh2CG549400 Rh2DG589800
rosa_wichuraiana	Rw2G046970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	279
AciI	CCGC	3 cut(s)	658, 838, 890
AclWI	GGATC	1 cut(s)	1051
AcsI	RAATTY	1 cut(s)	682
AfiI	CCNNNNNNNGG	2 cut(s)	281, 1040
AgsI	TTSAA	5 cut(s)	80, 230, 634, 694, 898
AhdI	GACNNNNNGTC	1 cut(s)	967
AjnI	CCWGG	2 cut(s)	291, 990
AluBI	AGCT	6 cut(s)	25, 565, 646, 740, 1015, 1121
AluI	AGCT	6 cut(s)	25, 565, 646, 740, 1015, 1121
Alw26I	GTCTC	2 cut(s)	271, 832
AlwI	GGATC	1 cut(s)	1051
AoxI	GGCC	2 cut(s)	272, 342
ApaI	GGGCCC	1 cut(s)	346
ApeKI	GCWGC	4 cut(s)	558, 643, 1066, 1121
ApoI	RAATTY	1 cut(s)	682
AspS9I	GGNCC	7 cut(s)	272, 288, 295, 342, 343, 573, 1263
AsuHPI	GGTGA	2 cut(s)	55, 734
AsuII	TTCGAA	2 cut(s)	664, 680
AvaII	GGWCC	4 cut(s)	288, 295, 573, 1263
BaeGI	GKGCMC	1 cut(s)	346
BanII	GRGCYC	1 cut(s)	346
BbsI	GAAGAC	1 cut(s)	879
BbvI	GCAGC	4 cut(s)	545, 655, 1078, 1108
BccI	CCATC	7 cut(s)	509, 611, 785, 995, 1037, 1145, 1168
BcgI	CGANNNNNNTGC	2 cut(s)	444, 478
BciT130I	CCWGG	2 cut(s)	293, 992
BciVI	GTATCC	1 cut(s)	930
BclI	TGATCA	1 cut(s)	379
BcoDI	GTCTC	2 cut(s)	271, 832
BfaI	CTAG	1 cut(s)	98
BfuI	GTATCC	1 cut(s)	930
BglII	AGATCT	2 cut(s)	367, 842
BisI	GCNGC	5 cut(s)	559, 644, 891, 1067, 1122
BlsI	GCNGC	5 cut(s)	560, 645, 892, 1068, 1123
Bme1390I	CCNGG	2 cut(s)	293, 992
Bme18I	GGWCC	4 cut(s)	288, 295, 573, 1263
BmeRI	GACNNNNNGTC	1 cut(s)	967
BmgT120I	GGNCC	7 cut(s)	272, 288, 295, 342, 343, 573, 1263
BmiI	GGNNCC	4 cut(s)	289, 290, 344, 475
BmrFI	CCNGG	2 cut(s)	293, 992
BmsI	GCATC	2 cut(s)	1190, 1230
BpiI	GAAGAC	1 cut(s)	879
Bpu14I	TTCGAA	2 cut(s)	664, 680
BsaBI	GATNNNNATC	2 cut(s)	408, 1244
BsaJI	CCNNGG	1 cut(s)	291
BsaWI	WCCGGW	1 cut(s)	470
BsaXI	ACNNNNNCTCC	4 cut(s)	101, 131, 612, 642
Bsc4I	CCNNNNNNNGG	2 cut(s)	281, 1040
Bse1I	ACTGG	1 cut(s)	941
Bse3DI	GCAATG	1 cut(s)	462
Bse8I	GATNNNNATC	2 cut(s)	408, 1244
BseBI	CCWGG	2 cut(s)	293, 992
BseDI	CCNNGG	1 cut(s)	291
BseGI	GGATG	1 cut(s)	1029
BseJI	GATNNNNATC	2 cut(s)	408, 1244
BseLI	CCNNNNNNNGG	2 cut(s)	281, 1040
BseMI	GCAATG	1 cut(s)	462
BseMII	CTCAG	4 cut(s)	282, 316, 374, 1011
BseNI	ACTGG	1 cut(s)	941
BseRI	GAGGAG	7 cut(s)	62, 109, 136, 154, 196, 199, 212
BseSI	GKGCMC	1 cut(s)	346
BseXI	GCAGC	4 cut(s)	545, 655, 1078, 1108
BseYI	CCCAGC	1 cut(s)	740
BsgI	GTGCAG	3 cut(s)	302, 1187, 1218
BshFI	GGCC	2 cut(s)	274, 344
BsiSI	CCGG	2 cut(s)	471, 805
BslFI	GGGAC	3 cut(s)	274, 796, 955
BslI	CCNNNNNNNGG	2 cut(s)	281, 1040
BsmAI	GTCTC	2 cut(s)	271, 832
BsmFI	GGGAC	3 cut(s)	274, 796, 955
BsmI	GAATGC	1 cut(s)	893
BsnI	GGCC	2 cut(s)	274, 344
Bsp119I	TTCGAA	2 cut(s)	664, 680
Bsp120I	GGGCCC	1 cut(s)	342
Bsp1286I	GDGCHC	1 cut(s)	346
Bsp143I	GATC	4 cut(s)	367, 379, 842, 1043
BspACI	CCGC	3 cut(s)	658, 838, 890
BspANI	GGCC	2 cut(s)	274, 344
BspCNI	CTCAG	4 cut(s)	281, 315, 373, 1010
BspLI	GGNNCC	4 cut(s)	289, 290, 344, 475
BspPI	GGATC	1 cut(s)	1051
BspT104I	TTCGAA	2 cut(s)	664, 680
BsrDI	GCAATG	1 cut(s)	462
BsrI	ACTGG	1 cut(s)	941
BssECI	CCNNGG	1 cut(s)	291
BssMI	GATC	4 cut(s)	367, 379, 842, 1043
Bst2UI	CCWGG	2 cut(s)	293, 992
Bst4CI	ACNGT	1 cut(s)	969
Bst6I	CTCTTC	1 cut(s)	55
BstAPI	GCANNNNNTGC	1 cut(s)	1072
BstBI	TTCGAA	2 cut(s)	664, 680
BstC8I	GCNNGC	1 cut(s)	563
BstDEI	CTNAG	5 cut(s)	268, 302, 360, 672, 997
BstENI	CCTNNNNNAGG	1 cut(s)	279
BstF5I	GGATG	1 cut(s)	1029
BstKTI	GATC	4 cut(s)	370, 382, 845, 1046
BstMAI	GTCTC	2 cut(s)	271, 832
BstMBI	GATC	4 cut(s)	367, 379, 842, 1043
BstMWI	GCNNNNNNNGC	1 cut(s)	1072
BstNI	CCWGG	2 cut(s)	293, 992
BstSCI	CCNGG	2 cut(s)	291, 990
BstSLI	GKGCMC	1 cut(s)	346
BstV1I	GCAGC	4 cut(s)	545, 655, 1078, 1108
BstV2I	GAAGAC	1 cut(s)	879
BstX2I	RGATCY	2 cut(s)	367, 842
BstYI	RGATCY	2 cut(s)	367, 842
BsuI	GTATCC	1 cut(s)	930
BsuRI	GGCC	2 cut(s)	274, 344
BtgZI	GCGATG	1 cut(s)	804
BtsCI	GGATG	1 cut(s)	1029
BtsIMutI	CAGTG	2 cut(s)	948, 965
Cac8I	GCNNGC	1 cut(s)	563
Cfr13I	GGNCC	7 cut(s)	272, 288, 295, 342, 343, 573, 1263
CseI	GACGC	1 cut(s)	971
CviAII	CATG	6 cut(s)	106, 413, 761, 867, 1063, 1189
DdeI	CTNAG	5 cut(s)	268, 302, 360, 672, 997
DpnI	GATC	4 cut(s)	369, 381, 844, 1045
DpnII	GATC	4 cut(s)	367, 379, 842, 1043
DraI	TTTAAA	1 cut(s)	1218
DriI	GACNNNNNGTC	1 cut(s)	967
Eam1104I	CTCTTC	1 cut(s)	55
Eam1105I	GACNNNNNGTC	1 cut(s)	967
EarI	CTCTTC	1 cut(s)	55
Eco24I	GRGCYC	1 cut(s)	346
Eco47I	GGWCC	4 cut(s)	288, 295, 573, 1263
EcoNI	CCTNNNNNAGG	1 cut(s)	279
EcoO109I	RGGNCCY	4 cut(s)	272, 288, 295, 342
EcoRI	GAATTC	1 cut(s)	682
EcoRII	CCWGG	2 cut(s)	291, 990
EcoT22I	ATGCAT	1 cut(s)	1245
EcoT38I	GRGCYC	1 cut(s)	346
FaeI	CATG	6 cut(s)	109, 416, 764, 870, 1066, 1192
FaqI	GGGAC	3 cut(s)	274, 796, 955
FatI	CATG	6 cut(s)	105, 412, 760, 866, 1062, 1188
FauI	CCCGC	1 cut(s)	651
FbaI	TGATCA	1 cut(s)	379
Fnu4HI	GCNGC	5 cut(s)	559, 644, 891, 1067, 1122
FokI	GGATG	1 cut(s)	1016
FriOI	GRGCYC	1 cut(s)	346
Fsp4HI	GCNGC	5 cut(s)	559, 644, 891, 1067, 1122
FspBI	CTAG	1 cut(s)	98
GluI	GCNGC	5 cut(s)	559, 644, 891, 1067, 1122
GsaI	CCCAGC	1 cut(s)	744
HaeIII	GGCC	2 cut(s)	274, 344
HapII	CCGG	2 cut(s)	471, 805
HgaI	GACGC	1 cut(s)	971
Hin1II	CATG	6 cut(s)	109, 416, 764, 870, 1066, 1192
HindIII	AAGCTT	1 cut(s)	563
HinfI	GANTC	5 cut(s)	116, 404, 601, 863, 995
HpaII	CCGG	2 cut(s)	471, 805
HphI	GGTGA	2 cut(s)	55, 734
Hpy166II	GTNNAC	1 cut(s)	1010
Hpy188I	TCNGA	7 cut(s)	115, 363, 1000, 1048, 1150, 1186, 1292
Hpy188III	TCNNGA	3 cut(s)	598, 927, 1112
Hpy8I	GTNNAC	1 cut(s)	1010
HpyAV	CCTTC	8 cut(s)	51, 147, 210, 236, 308, 773, 927, 940
HpyCH4III	ACNGT	1 cut(s)	969
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1072
HpyF3I	CTNAG	5 cut(s)	268, 302, 360, 672, 997
Hsp92II	CATG	6 cut(s)	109, 416, 764, 870, 1066, 1192
KflI	GGGWCCC	1 cut(s)	288
Ksp22I	TGATCA	1 cut(s)	379
Kzo9I	GATC	4 cut(s)	367, 379, 842, 1043
Lsp1109I	GCAGC	4 cut(s)	545, 655, 1078, 1108
LweI	GCATC	2 cut(s)	1190, 1230
MaeI	CTAG	1 cut(s)	98
MaeIII	GTNAC	2 cut(s)	722, 794
MalI	GATC	4 cut(s)	369, 381, 844, 1045
MboI	GATC	4 cut(s)	367, 379, 842, 1043
MboII	GAAGA	6 cut(s)	42, 623, 820, 884, 942, 1100
MflI	RGATCY	2 cut(s)	367, 842
MhlI	GDGCHC	1 cut(s)	346
MlyI	GAGTC	3 cut(s)	110, 857, 989
Mph1103I	ATGCAT	1 cut(s)	1245
MseI	TTAA	6 cut(s)	708, 849, 986, 1217, 1280, 1286
MslI	CAYNNNNRTG	1 cut(s)	765
MspI	CCGG	2 cut(s)	471, 805
MspR9I	CCNGG	2 cut(s)	293, 992
Mva1269I	GAATGC	1 cut(s)	893
MvaI	CCWGG	2 cut(s)	293, 992
MwoI	GCNNNNNNNGC	1 cut(s)	1072
NdeII	GATC	4 cut(s)	367, 379, 842, 1043
NlaIII	CATG	6 cut(s)	109, 416, 764, 870, 1066, 1192
NlaIV	GGNNCC	4 cut(s)	289, 290, 344, 475
NmuCI	GTSAC	1 cut(s)	722
NsiI	ATGCAT	1 cut(s)	1245
NspV	TTCGAA	2 cut(s)	664, 680
PctI	GAATGC	1 cut(s)	893
PfeI	GAWTC	2 cut(s)	404, 601
PfoI	TCCNGGA	1 cut(s)	990
PkrI	GCNGC	5 cut(s)	560, 645, 892, 1068, 1123
PleI	GAGTC	3 cut(s)	110, 857, 989
PpsI	GAGTC	3 cut(s)	110, 857, 989
PpuMI	RGGWCCY	2 cut(s)	288, 295
PsiI	TTATAA	1 cut(s)	279
Psp5II	RGGWCCY	2 cut(s)	288, 295
Psp6I	CCWGG	2 cut(s)	291, 990
PspFI	CCCAGC	1 cut(s)	740
PspGI	CCWGG	2 cut(s)	291, 990
PspN4I	GGNNCC	4 cut(s)	289, 290, 344, 475
PspOMI	GGGCCC	1 cut(s)	342
PspPI	GGNCC	7 cut(s)	272, 288, 295, 342, 343, 573, 1263
PspPPI	RGGWCCY	2 cut(s)	288, 295
PsuI	RGATCY	2 cut(s)	367, 842
RseI	CAYNNNNRTG	1 cut(s)	765
SaqAI	TTAA	6 cut(s)	708, 849, 986, 1217, 1280, 1286
SatI	GCNGC	5 cut(s)	559, 644, 891, 1067, 1122
Sau3AI	GATC	4 cut(s)	367, 379, 842, 1043
Sau96I	GGNCC	7 cut(s)	272, 288, 295, 342, 343, 573, 1263
SchI	GAGTC	3 cut(s)	110, 857, 989
ScrFI	CCNGG	2 cut(s)	293, 992
SduI	GDGCHC	1 cut(s)	346
SfaNI	GCATC	2 cut(s)	1190, 1230
SfuI	TTCGAA	2 cut(s)	664, 680
SinI	GGWCC	4 cut(s)	288, 295, 573, 1263
SmiI	ATTTAAAT	1 cut(s)	1218
SmiMI	CAYNNNNRTG	1 cut(s)	765
SsiI	CCGC	3 cut(s)	658, 838, 890
SspMI	CTAG	1 cut(s)	98
StyD4I	CCNGG	2 cut(s)	291, 990
SwaI	ATTTAAAT	1 cut(s)	1218
TaaI	ACNGT	1 cut(s)	969
TaqI	TCGA	4 cut(s)	422, 664, 680, 686
TauI	GCSGC	1 cut(s)	893
TfiI	GAWTC	2 cut(s)	404, 601
Tru1I	TTAA	6 cut(s)	708, 849, 986, 1217, 1280, 1286
Tru9I	TTAA	6 cut(s)	708, 849, 986, 1217, 1280, 1286
TscAI	CASTG	2 cut(s)	948, 972
TseFI	GTSAC	1 cut(s)	722
TseI	GCWGC	4 cut(s)	558, 643, 1066, 1121
Tsp45I	GTSAC	1 cut(s)	722
TspDTI	ATGAA	3 cut(s)	250, 1051, 1100
TspGWI	ACGGA	1 cut(s)	891
TspRI	CASTG	2 cut(s)	948, 972
VpaK11BI	GGWCC	4 cut(s)	288, 295, 573, 1263
XagI	CCTNNNNNAGG	1 cut(s)	279
XapI	RAATTY	1 cut(s)	682
XspI	CTAG	1 cut(s)	98
Zsp2I	ATGCAT	1 cut(s)	1245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.