Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0009703

Physical Location & Seq

Genomic Coordinates Reverse (-)

79834622 .. 79840208

Gene Structure 5587 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG567200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

ATGGTTGTTGTCCAAGCCTCCAAGCTCAACCTCCCCTACCCTTCCTTCTCTTCCCCTCATATCACCTCTCTCCTCTTTGAACCCAACTCTCTCTCTCTAGCCCTCATGCACTCTGACTCCTCTTTCTCTCTCTACCCTTCTCTCTCCTCCCCTCTTTCTCTCTCCTCCCTCCCCCCTCCCCAAATCCTAATCCACCCCCCTTCCTCCTCCTCCACTTTCCTCCTCCTTCAAAACCCTAACCCTAACCCTAATCCCAATCCCAATCCCAGAGTGCTTTTCATTGTCTCAGGGCCTTATAAAGGTGGGTCCCAGGTCCTTCTCAGGTTCTACATTCTGCACAAGCAGACCCAATTTGTGAGGGCCCAAGTGGTTTGCTCTCAGAAAGATCTCAACTTTGATCACAAATTGGGGGTTTTGGTGGATTCTAATCATGGGGTTTCGATTAGGCTTTCTGGGTCTGTCAATTTCTTTGCAATGTATTCGGTTTCCGGCTCCAAGATTTCGGTTTTCGCTGTCAAAGATGTTGGTGGTGATGGGATGGCTGTGAAATTGATGAGGTGTGCTGTCATTGATTGCTGCAAGCTTGTGTGGTCCATTACCGTTTCCTTCGGGTTCTTGATTCTGGGGGAAGATGATGGAGTGAGGGTTTTCAATTTGAGGCAGCTTGTGAAAGGGCGGGTTCGAAAGGCTAAGTGTTCGAATTCGAGTTTGAAATTGGGTTTGTTAAATGGGGTGATTGGTGACAATGTGCAAGAAGCTGGGGATTGTGGAAATAAACATGGAAGTGGAAAGTGTGAAGGGACTTGCGATGCTTACTTGTGCCGGAAGAATGATAGGAATTGTGTCTCTGTCAAGCGGAGATCTGTTAAACTGAAACAAGACTCATGTGAAGACGGAGTGTGTTTTGCGGCATTCAAGGGCAAGGAGTTAGAAACCTCTAAATCAAGAAGAAGGATACCAGTGAAGGCAATTTCCATTGATGCACTGTCCCCTAACAAACTTTTAATCCTGGACTCAGATGGAGGTTTACAGCTTTTGCACCTTTCCATCCCTGTAATTGGATCAGATATAACTACTTTCATGCAGCAGTTGCCTAACACTATGAAAGTGCAAAAGGTGGCTGTTCTTCCTGAAATAGCTGCAAGTATGCTTCTTCTCTCCCTTTTATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

390

Amino Acids

42.32

Weight (kDa)

9.34

Isoelectric Point (pI)

44.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009703)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g45360 FvH4_6g45360 FvH4_6g45360 FvH4_6g45360 FvH4_6g45360 FvH4_6g45360
malus_domestica	MD09G1084700.v1.1 MD17G1074100.v1.1
prunus_persica	Prupe.3G239800_v2.0.a1
pyrus_communis	pycom06g15940 pycom09g01030 pycom17g07480
rosa_chinensis	RchiOBHm_Chr2g0163141
rosa_laevigata	RLG00000021377
rosa_multiflora	Rmu_sc0002045.1_g000040
rosa_roxburghii	Rroxscaffold_2G00087510
rosa_rugosa	Rorug02G0501000
rosa_samantha	Rh2AG567200 Rh2BG579500 Rh2CG549400 Rh2DG589800
rosa_wichuraiana	Rw2G046970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	297
AciI	CCGC	3 cut(s)	676, 856, 908
AclWI	GGATC	1 cut(s)	1069
AcsI	RAATTY	1 cut(s)	700
AfiI	CCNNNNNNNGG	2 cut(s)	299, 1058
AgsI	TTSAA	5 cut(s)	80, 230, 652, 712, 916
AjnI	CCWGG	2 cut(s)	309, 1008
AluBI	AGCT	6 cut(s)	25, 583, 664, 758, 1033, 1139
AluI	AGCT	6 cut(s)	25, 583, 664, 758, 1033, 1139
Alw26I	GTCTC	2 cut(s)	289, 850
AlwI	GGATC	1 cut(s)	1069
AoxI	GGCC	2 cut(s)	290, 360
ApaI	GGGCCC	1 cut(s)	364
ApeKI	GCWGC	4 cut(s)	576, 661, 1084, 1139
ApoI	RAATTY	1 cut(s)	700
AspS9I	GGNCC	6 cut(s)	290, 306, 313, 360, 361, 591
AsuHPI	GGTGA	4 cut(s)	55, 542, 745, 752
AsuII	TTCGAA	2 cut(s)	682, 698
AvaII	GGWCC	3 cut(s)	306, 313, 591
BaeGI	GKGCMC	1 cut(s)	364
BanII	GRGCYC	1 cut(s)	364
BbsI	GAAGAC	1 cut(s)	897
BbvI	GCAGC	4 cut(s)	563, 673, 1096, 1126
BccI	CCATC	5 cut(s)	527, 532, 629, 1013, 1055
BcgI	CGANNNNNNTGC	2 cut(s)	462, 496
BciT130I	CCWGG	2 cut(s)	311, 1010
BciVI	GTATCC	1 cut(s)	948
BclI	TGATCA	1 cut(s)	397
BcoDI	GTCTC	2 cut(s)	289, 850
BfaI	CTAG	1 cut(s)	98
BfuI	GTATCC	1 cut(s)	948
BglII	AGATCT	2 cut(s)	385, 860
BisI	GCNGC	5 cut(s)	577, 662, 909, 1085, 1140
BlsI	GCNGC	5 cut(s)	578, 663, 910, 1086, 1141
Bme1390I	CCNGG	2 cut(s)	311, 1010
Bme18I	GGWCC	3 cut(s)	306, 313, 591
BmgT120I	GGNCC	6 cut(s)	290, 306, 313, 360, 361, 591
BmiI	GGNNCC	4 cut(s)	307, 308, 362, 493
BmrFI	CCNGG	2 cut(s)	311, 1010
BmsI	GCATC	2 cut(s)	799, 970
BpiI	GAAGAC	1 cut(s)	897
Bpu14I	TTCGAA	2 cut(s)	682, 698
BsaBI	GATNNNNATC	1 cut(s)	426
BsaJI	CCNNGG	1 cut(s)	309
BsaXI	ACNNNNNCTCC	4 cut(s)	101, 131, 630, 660
Bsc4I	CCNNNNNNNGG	2 cut(s)	299, 1058
Bse1I	ACTGG	1 cut(s)	959
Bse3DI	GCAATG	1 cut(s)	480
Bse8I	GATNNNNATC	1 cut(s)	426
BseBI	CCWGG	2 cut(s)	311, 1010
BseDI	CCNNGG	1 cut(s)	309
BseGI	GGATG	2 cut(s)	543, 1047
BseJI	GATNNNNATC	1 cut(s)	426
BseLI	CCNNNNNNNGG	2 cut(s)	299, 1058
BseMI	GCAATG	1 cut(s)	480
BseMII	CTCAG	4 cut(s)	300, 334, 392, 1029
BseNI	ACTGG	1 cut(s)	959
BseRI	GAGGAG	7 cut(s)	62, 109, 136, 154, 196, 199, 212
BseSI	GKGCMC	1 cut(s)	364
BseXI	GCAGC	4 cut(s)	563, 673, 1096, 1126
BseYI	CCCAGC	1 cut(s)	758
BsgI	GTGCAG	1 cut(s)	320
BshFI	GGCC	2 cut(s)	292, 362
BsiSI	CCGG	2 cut(s)	489, 823
BslFI	GGGAC	3 cut(s)	292, 814, 973
BslI	CCNNNNNNNGG	2 cut(s)	299, 1058
BsmAI	GTCTC	2 cut(s)	289, 850
BsmFI	GGGAC	3 cut(s)	292, 814, 973
BsmI	GAATGC	1 cut(s)	911
BsnI	GGCC	2 cut(s)	292, 362
Bsp119I	TTCGAA	2 cut(s)	682, 698
Bsp120I	GGGCCC	1 cut(s)	360
Bsp1286I	GDGCHC	1 cut(s)	364
Bsp143I	GATC	4 cut(s)	385, 397, 860, 1061
BspACI	CCGC	3 cut(s)	676, 856, 908
BspANI	GGCC	2 cut(s)	292, 362
BspCNI	CTCAG	4 cut(s)	299, 333, 391, 1028
BspLI	GGNNCC	4 cut(s)	307, 308, 362, 493
BspPI	GGATC	1 cut(s)	1069
BspT104I	TTCGAA	2 cut(s)	682, 698
BsrDI	GCAATG	1 cut(s)	480
BsrI	ACTGG	1 cut(s)	959
BssECI	CCNNGG	1 cut(s)	309
BssMI	GATC	4 cut(s)	385, 397, 860, 1061
Bst2UI	CCWGG	2 cut(s)	311, 1010
Bst4CI	ACNGT	2 cut(s)	601, 987
Bst6I	CTCTTC	1 cut(s)	55
BstAPI	GCANNNNNTGC	1 cut(s)	1090
BstBI	TTCGAA	2 cut(s)	682, 698
BstC8I	GCNNGC	1 cut(s)	581
BstDEI	CTNAG	5 cut(s)	286, 320, 378, 690, 1015
BstENI	CCTNNNNNAGG	1 cut(s)	297
BstF5I	GGATG	2 cut(s)	543, 1047
BstKTI	GATC	4 cut(s)	388, 400, 863, 1064
BstMAI	GTCTC	2 cut(s)	289, 850
BstMBI	GATC	4 cut(s)	385, 397, 860, 1061
BstMWI	GCNNNNNNNGC	1 cut(s)	1090
BstNI	CCWGG	2 cut(s)	311, 1010
BstSCI	CCNGG	2 cut(s)	309, 1008
BstSLI	GKGCMC	1 cut(s)	364
BstV1I	GCAGC	4 cut(s)	563, 673, 1096, 1126
BstV2I	GAAGAC	1 cut(s)	897
BstX2I	RGATCY	2 cut(s)	385, 860
BstYI	RGATCY	2 cut(s)	385, 860
BsuI	GTATCC	1 cut(s)	948
BsuRI	GGCC	2 cut(s)	292, 362
BtgZI	GCGATG	1 cut(s)	822
BtsCI	GGATG	2 cut(s)	543, 1047
BtsIMutI	CAGTG	2 cut(s)	966, 983
Cac8I	GCNNGC	1 cut(s)	581
Cfr13I	GGNCC	6 cut(s)	290, 306, 313, 360, 361, 591
CviAII	CATG	5 cut(s)	106, 431, 779, 885, 1081
DdeI	CTNAG	5 cut(s)	286, 320, 378, 690, 1015
DpnI	GATC	4 cut(s)	387, 399, 862, 1063
DpnII	GATC	4 cut(s)	385, 397, 860, 1061
Eam1104I	CTCTTC	1 cut(s)	55
EarI	CTCTTC	1 cut(s)	55
Eco24I	GRGCYC	1 cut(s)	364
Eco47I	GGWCC	3 cut(s)	306, 313, 591
EcoNI	CCTNNNNNAGG	1 cut(s)	297
EcoO109I	RGGNCCY	4 cut(s)	290, 306, 313, 360
EcoRI	GAATTC	1 cut(s)	700
EcoRII	CCWGG	2 cut(s)	309, 1008
EcoT38I	GRGCYC	1 cut(s)	364
FaeI	CATG	5 cut(s)	109, 434, 782, 888, 1084
FaqI	GGGAC	3 cut(s)	292, 814, 973
FatI	CATG	5 cut(s)	105, 430, 778, 884, 1080
FauI	CCCGC	1 cut(s)	669
FbaI	TGATCA	1 cut(s)	397
Fnu4HI	GCNGC	5 cut(s)	577, 662, 909, 1085, 1140
FokI	GGATG	2 cut(s)	550, 1034
FriOI	GRGCYC	1 cut(s)	364
Fsp4HI	GCNGC	5 cut(s)	577, 662, 909, 1085, 1140
FspBI	CTAG	1 cut(s)	98
GluI	GCNGC	5 cut(s)	577, 662, 909, 1085, 1140
GsaI	CCCAGC	1 cut(s)	762
HaeIII	GGCC	2 cut(s)	292, 362
HapII	CCGG	2 cut(s)	489, 823
Hin1II	CATG	5 cut(s)	109, 434, 782, 888, 1084
HindIII	AAGCTT	1 cut(s)	581
HinfI	GANTC	5 cut(s)	116, 422, 619, 881, 1013
HpaII	CCGG	2 cut(s)	489, 823
HphI	GGTGA	4 cut(s)	55, 542, 745, 752
Hpy166II	GTNNAC	1 cut(s)	1028
Hpy188I	TCNGA	4 cut(s)	115, 381, 1018, 1066
Hpy188III	TCNNGA	3 cut(s)	616, 945, 1130
Hpy8I	GTNNAC	1 cut(s)	1028
HpyCH4III	ACNGT	2 cut(s)	601, 987
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1090
HpyF3I	CTNAG	5 cut(s)	286, 320, 378, 690, 1015
Hsp92II	CATG	5 cut(s)	109, 434, 782, 888, 1084
KflI	GGGWCCC	1 cut(s)	306
Ksp22I	TGATCA	1 cut(s)	397
Kzo9I	GATC	4 cut(s)	385, 397, 860, 1061
LmnI	GCTCC	1 cut(s)	497
Lsp1109I	GCAGC	4 cut(s)	563, 673, 1096, 1126
LweI	GCATC	2 cut(s)	799, 970
MaeI	CTAG	1 cut(s)	98
MaeIII	GTNAC	1 cut(s)	740
MalI	GATC	4 cut(s)	387, 399, 862, 1063
MboI	GATC	4 cut(s)	385, 397, 860, 1061
MboII	GAAGA	7 cut(s)	42, 641, 838, 902, 960, 1118, 1145
MflI	RGATCY	2 cut(s)	385, 860
MhlI	GDGCHC	1 cut(s)	364
MlyI	GAGTC	3 cut(s)	110, 875, 1007
MseI	TTAA	4 cut(s)	725, 867, 1004, 1171
MslI	CAYNNNNRTG	1 cut(s)	783
MspI	CCGG	2 cut(s)	489, 823
MspR9I	CCNGG	2 cut(s)	311, 1010
Mva1269I	GAATGC	1 cut(s)	911
MvaI	CCWGG	2 cut(s)	311, 1010
MwoI	GCNNNNNNNGC	1 cut(s)	1090
NdeII	GATC	4 cut(s)	385, 397, 860, 1061
NlaIII	CATG	5 cut(s)	109, 434, 782, 888, 1084
NlaIV	GGNNCC	4 cut(s)	307, 308, 362, 493
NmuCI	GTSAC	1 cut(s)	740
NspV	TTCGAA	2 cut(s)	682, 698
PctI	GAATGC	1 cut(s)	911
PfeI	GAWTC	2 cut(s)	422, 619
PfoI	TCCNGGA	1 cut(s)	1008
PkrI	GCNGC	5 cut(s)	578, 663, 910, 1086, 1141
PleI	GAGTC	3 cut(s)	110, 875, 1007
PpsI	GAGTC	3 cut(s)	110, 875, 1007
PpuMI	RGGWCCY	2 cut(s)	306, 313
PsiI	TTATAA	1 cut(s)	297
Psp5II	RGGWCCY	2 cut(s)	306, 313
Psp6I	CCWGG	2 cut(s)	309, 1008
PspFI	CCCAGC	1 cut(s)	758
PspGI	CCWGG	2 cut(s)	309, 1008
PspN4I	GGNNCC	4 cut(s)	307, 308, 362, 493
PspOMI	GGGCCC	1 cut(s)	360
PspPI	GGNCC	6 cut(s)	290, 306, 313, 360, 361, 591
PspPPI	RGGWCCY	2 cut(s)	306, 313
PsuI	RGATCY	2 cut(s)	385, 860
RseI	CAYNNNNRTG	1 cut(s)	783
SaqAI	TTAA	4 cut(s)	725, 867, 1004, 1171
SatI	GCNGC	5 cut(s)	577, 662, 909, 1085, 1140
Sau3AI	GATC	4 cut(s)	385, 397, 860, 1061
Sau96I	GGNCC	6 cut(s)	290, 306, 313, 360, 361, 591
SchI	GAGTC	3 cut(s)	110, 875, 1007
ScrFI	CCNGG	2 cut(s)	311, 1010
SduI	GDGCHC	1 cut(s)	364
SfaNI	GCATC	2 cut(s)	799, 970
SfuI	TTCGAA	2 cut(s)	682, 698
SinI	GGWCC	3 cut(s)	306, 313, 591
SmiMI	CAYNNNNRTG	1 cut(s)	783
SsiI	CCGC	3 cut(s)	676, 856, 908
SspMI	CTAG	1 cut(s)	98
StyD4I	CCNGG	2 cut(s)	309, 1008
TaaI	ACNGT	2 cut(s)	601, 987
TaqI	TCGA	4 cut(s)	440, 682, 698, 704
TauI	GCSGC	1 cut(s)	911
TfiI	GAWTC	2 cut(s)	422, 619
Tru1I	TTAA	4 cut(s)	725, 867, 1004, 1171
Tru9I	TTAA	4 cut(s)	725, 867, 1004, 1171
TscAI	CASTG	2 cut(s)	966, 990
TseFI	GTSAC	1 cut(s)	740
TseI	GCWGC	4 cut(s)	576, 661, 1084, 1139
Tsp45I	GTSAC	1 cut(s)	740
TspDTI	ATGAA	3 cut(s)	268, 1069, 1118
TspGWI	ACGGA	1 cut(s)	909
TspRI	CASTG	2 cut(s)	966, 990
VpaK11BI	GGWCC	3 cut(s)	306, 313, 591
XagI	CCTNNNNNAGG	1 cut(s)	297
XapI	RAATTY	1 cut(s)	700
XspI	CTAG	1 cut(s)	98

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.