Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0009703

Physical Location & Seq

Genomic Coordinates Reverse (-)

79671489 .. 79675134

Gene Structure 3646 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG579500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGTATTCGGTTTCCGGCTCCAAGATTTCGGTTTTCGCCGTCAAAGATGTTGGTGCTGATGGGGTGGCTGTGAAATTGATGAGGTGTGCTGTCATTGATTGCTGCAAGCTTGTGTGGTCCATTAGCGTTTCGTTCGGGTTCTTGATTCTGGGGGAAGATGATGGAGTGAGGGTTTTCAATTTGAGGCAGCTTGTGAAAGGGCGCGTTCGAAAGGCTAAGAGTTCGAATTCGAGTTTGAAATTGGGTTTGTTAAATGGGGTGATTGGTGACAATGTGCAAGAAGCTGGGGATTGTGGAAATAAACATGGAAGTGGAAAGTGTGAAGGGACTTGCGATGCTTACTTGTGCCGGAAGAATGATAGGAATTGTGTCTCTGTCAAGCGGAGATCTGTTAAACTGAAACAAGACTCATGTGAAGACGGAGTGTGTTTTGCGGCATTCAAGGGCAAGGAGTTAGAAACCTCTAAATCAAGTAGAAGGATACCAGTGAAGGCAATTTCCATTGACGCTTTGTCCCCTAACAAACTTTTAATCCTGGACTCAGATGGAGGTTTACAGCTTTTGCACCTTTCCATCCCTGTAATTGGATCAGATATAACTACTTTCATGCAGCAGTTGCCTAACACTATGAAAGTGCAAAAGGTGGCTGTTCTTCCTGAAATAGCTGCAAGAACACAATCTGTTTGGGTGTCAGATGGCTACAATTCTGTGCAGATGATGGTGGCATCTGACATGGATAGTGCAGTTAGCCAAAATGATTTAAATGAGAGCAAGGAAAAGCCAATGCATATCACAGTTGGTCTCACAATTTTTACTGGGGAAAAGATTCAAGACCTTACTCCTTTGGCCGGAAATGCTATTTTGATTCTTGGACAAGGAAACTTGTACACGTATGCTACCTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

301

Amino Acids

32.39

Weight (kDa)

8.74

Isoelectric Point (pI)

35.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009703)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g45360 FvH4_6g45360 FvH4_6g45360 FvH4_6g45360 FvH4_6g45360 FvH4_6g45360
malus_domestica	MD09G1084700.v1.1 MD17G1074100.v1.1
prunus_persica	Prupe.3G239800_v2.0.a1
pyrus_communis	pycom06g15940 pycom09g01030 pycom17g07480
rosa_chinensis	RchiOBHm_Chr2g0163141
rosa_laevigata	RLG00000021377
rosa_multiflora	Rmu_sc0002045.1_g000040
rosa_roxburghii	Rroxscaffold_2G00087510
rosa_rugosa	Rorug02G0501000
rosa_samantha	Rh2AG567200 Rh2BG579500 Rh2CG549400 Rh2DG589800
rosa_wichuraiana	Rw2G046970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	204
AciI	CCGC	2 cut(s)	382, 434
AclWI	GGATC	1 cut(s)	595
AcoI	YGGCCR	1 cut(s)	846
AcsI	RAATTY	1 cut(s)	226
AfaI	GTAC	1 cut(s)	887
AfiI	CCNNNNNNNGG	2 cut(s)	584, 848
AflIII	ACRYGT	1 cut(s)	888
AgsI	TTSAA	4 cut(s)	178, 238, 442, 830
AhdI	GACNNNNNGTC	1 cut(s)	511
AjnI	CCWGG	1 cut(s)	534
AluBI	AGCT	5 cut(s)	109, 190, 284, 559, 665
AluI	AGCT	5 cut(s)	109, 190, 284, 559, 665
Alw26I	GTCTC	2 cut(s)	376, 806
AlwI	GGATC	1 cut(s)	595
AoxI	GGCC	1 cut(s)	846
ApeKI	GCWGC	4 cut(s)	102, 187, 610, 665
ApoI	RAATTY	1 cut(s)	226
Asp700I	GAANNNNTTC	1 cut(s)	825
AspLEI	GCGC	1 cut(s)	204
AspS9I	GGNCC	1 cut(s)	117
AsuHPI	GGTGA	2 cut(s)	271, 278
AsuII	TTCGAA	2 cut(s)	208, 224
AvaII	GGWCC	1 cut(s)	117
BbsI	GAAGAC	1 cut(s)	423
BbvI	GCAGC	4 cut(s)	89, 199, 622, 652
BccI	CCATC	6 cut(s)	53, 155, 539, 581, 689, 712
BceAI	ACGGC	1 cut(s)	23
BciT130I	CCWGG	1 cut(s)	536
BciVI	GTATCC	1 cut(s)	474
BcoDI	GTCTC	2 cut(s)	376, 806
BfuI	GTATCC	1 cut(s)	474
BglII	AGATCT	1 cut(s)	386
BisI	GCNGC	5 cut(s)	103, 188, 435, 611, 666
BlsI	GCNGC	5 cut(s)	104, 189, 436, 612, 667
Bme1390I	CCNGG	1 cut(s)	536
Bme18I	GGWCC	1 cut(s)	117
BmeRI	GACNNNNNGTC	1 cut(s)	511
BmgT120I	GGNCC	1 cut(s)	117
BmiI	GGNNCC	1 cut(s)	19
BmrFI	CCNGG	1 cut(s)	536
BmrI	ACTGGG	1 cut(s)	825
BmsI	GCATC	2 cut(s)	325, 734
BmuI	ACTGGG	1 cut(s)	825
BpiI	GAAGAC	1 cut(s)	423
Bpu14I	TTCGAA	2 cut(s)	208, 224
BsaAI	YACGTR	1 cut(s)	891
BsaI	GGTCTC	1 cut(s)	806
BsaXI	ACNNNNNCTCC	2 cut(s)	156, 186
Bsc4I	CCNNNNNNNGG	2 cut(s)	584, 848
Bse1I	ACTGG	2 cut(s)	485, 820
BseBI	CCWGG	1 cut(s)	536
BseGI	GGATG	1 cut(s)	573
BseLI	CCNNNNNNNGG	2 cut(s)	584, 848
BseMII	CTCAG	1 cut(s)	555
BseNI	ACTGG	2 cut(s)	485, 820
BseXI	GCAGC	4 cut(s)	89, 199, 622, 652
BseYI	CCCAGC	1 cut(s)	284
BsgI	GTGCAG	2 cut(s)	731, 762
Bsh1236I	CGCG	1 cut(s)	204
BshFI	GGCC	1 cut(s)	848
BsiSI	CCGG	3 cut(s)	15, 349, 849
BslFI	GGGAC	2 cut(s)	340, 499
BslI	CCNNNNNNNGG	2 cut(s)	584, 848
BsmAI	GTCTC	2 cut(s)	376, 806
BsmFI	GGGAC	2 cut(s)	340, 499
BsmI	GAATGC	1 cut(s)	437
BsnI	GGCC	1 cut(s)	848
Bso31I	GGTCTC	1 cut(s)	806
Bsp119I	TTCGAA	2 cut(s)	208, 224
Bsp1407I	TGTACA	1 cut(s)	885
Bsp143I	GATC	2 cut(s)	386, 587
BspACI	CCGC	2 cut(s)	382, 434
BspANI	GGCC	1 cut(s)	848
BspCNI	CTCAG	1 cut(s)	554
BspFNI	CGCG	1 cut(s)	204
BspLI	GGNNCC	1 cut(s)	19
BspPI	GGATC	1 cut(s)	595
BspT104I	TTCGAA	2 cut(s)	208, 224
BspTNI	GGTCTC	1 cut(s)	806
BsrGI	TGTACA	1 cut(s)	885
BsrI	ACTGG	2 cut(s)	485, 820
BssMI	GATC	2 cut(s)	386, 587
Bst2UI	CCWGG	1 cut(s)	536
Bst4CI	ACNGT	1 cut(s)	796
BstAPI	GCANNNNNTGC	1 cut(s)	616
BstAUI	TGTACA	1 cut(s)	885
BstBAI	YACGTR	1 cut(s)	891
BstBI	TTCGAA	2 cut(s)	208, 224
BstC8I	GCNNGC	1 cut(s)	107
BstDEI	CTNAG	2 cut(s)	216, 541
BstF5I	GGATG	1 cut(s)	573
BstFNI	CGCG	1 cut(s)	204
BstHHI	GCGC	1 cut(s)	204
BstKTI	GATC	2 cut(s)	389, 590
BstMAI	GTCTC	2 cut(s)	376, 806
BstMBI	GATC	2 cut(s)	386, 587
BstMWI	GCNNNNNNNGC	2 cut(s)	616, 854
BstNI	CCWGG	1 cut(s)	536
BstSCI	CCNGG	1 cut(s)	534
BstUI	CGCG	1 cut(s)	204
BstV1I	GCAGC	4 cut(s)	89, 199, 622, 652
BstV2I	GAAGAC	1 cut(s)	423
BstX2I	RGATCY	1 cut(s)	386
BstYI	RGATCY	1 cut(s)	386
BsuI	GTATCC	1 cut(s)	474
BsuRI	GGCC	1 cut(s)	848
BtgZI	GCGATG	1 cut(s)	348
BtsCI	GGATG	1 cut(s)	573
BtsIMutI	CAGTG	1 cut(s)	492
Cac8I	GCNNGC	1 cut(s)	107
CfoI	GCGC	1 cut(s)	204
Cfr13I	GGNCC	1 cut(s)	117
CseI	GACGC	1 cut(s)	515
Csp6I	GTAC	1 cut(s)	886
CviAII	CATG	4 cut(s)	305, 411, 607, 733
CviQI	GTAC	1 cut(s)	886
DdeI	CTNAG	2 cut(s)	216, 541
DpnI	GATC	2 cut(s)	388, 589
DpnII	GATC	2 cut(s)	386, 587
DraI	TTTAAA	1 cut(s)	762
DriI	GACNNNNNGTC	1 cut(s)	511
EaeI	YGGCCR	1 cut(s)	846
Eam1105I	GACNNNNNGTC	1 cut(s)	511
Eco31I	GGTCTC	1 cut(s)	806
Eco47I	GGWCC	1 cut(s)	117
EcoRI	GAATTC	1 cut(s)	226
EcoRII	CCWGG	1 cut(s)	534
EcoT22I	ATGCAT	1 cut(s)	789
FaeI	CATG	4 cut(s)	308, 414, 610, 736
FaiI	YATR	8 cut(s)	306, 412, 596, 608, 629, 734, 789, 894
FaqI	GGGAC	2 cut(s)	340, 499
FatI	CATG	4 cut(s)	304, 410, 606, 732
Fnu4HI	GCNGC	5 cut(s)	103, 188, 435, 611, 666
FokI	GGATG	1 cut(s)	560
Fsp4HI	GCNGC	5 cut(s)	103, 188, 435, 611, 666
GlaI	GCGC	1 cut(s)	203
GluI	GCNGC	5 cut(s)	103, 188, 435, 611, 666
GsaI	CCCAGC	1 cut(s)	288
HaeIII	GGCC	1 cut(s)	848
HapII	CCGG	3 cut(s)	15, 349, 849
HgaI	GACGC	1 cut(s)	515
HhaI	GCGC	1 cut(s)	204
Hin1II	CATG	4 cut(s)	308, 414, 610, 736
Hin6I	GCGC	1 cut(s)	202
HinP1I	GCGC	1 cut(s)	202
HindIII	AAGCTT	1 cut(s)	107
HinfI	GANTC	5 cut(s)	145, 407, 539, 826, 865
HpaII	CCGG	3 cut(s)	15, 349, 849
HphI	GGTGA	2 cut(s)	271, 278
Hpy166II	GTNNAC	2 cut(s)	554, 888
Hpy188I	TCNGA	4 cut(s)	544, 592, 694, 730
Hpy188III	TCNNGA	4 cut(s)	142, 656, 830, 903
Hpy8I	GTNNAC	2 cut(s)	554, 888
HpyAV	CCTTC	3 cut(s)	317, 471, 484
HpyCH4III	ACNGT	1 cut(s)	796
HpyCH4IV	ACGT	1 cut(s)	890
HpyCH4V	TGCA	9 cut(s)	105, 277, 565, 610, 637, 668, 712, 743, 787
HpyF10VI	GCNNNNNNNGC	2 cut(s)	616, 854
HpyF3I	CTNAG	2 cut(s)	216, 541
HpySE526I	ACGT	1 cut(s)	890
Hsp92II	CATG	4 cut(s)	308, 414, 610, 736
HspAI	GCGC	1 cut(s)	202
Kzo9I	GATC	2 cut(s)	386, 587
LmnI	GCTCC	1 cut(s)	23
Lsp1109I	GCAGC	4 cut(s)	89, 199, 622, 652
LweI	GCATC	2 cut(s)	325, 734
MaeII	ACGT	1 cut(s)	890
MaeIII	GTNAC	1 cut(s)	266
MalI	GATC	2 cut(s)	388, 589
MboI	GATC	2 cut(s)	386, 587
MboII	GAAGA	4 cut(s)	167, 364, 428, 644
MflI	RGATCY	1 cut(s)	386
MluCI	AATT	9 cut(s)	74, 178, 226, 239, 364, 495, 582, 703, 807
MlyI	GAGTC	2 cut(s)	401, 533
MnlI	CCTC	5 cut(s)	75, 162, 177, 472, 542
Mph1103I	ATGCAT	1 cut(s)	789
MroXI	GAANNNNTTC	1 cut(s)	825
MseI	TTAA	4 cut(s)	251, 393, 530, 761
MslI	CAYNNNNRTG	1 cut(s)	309
MspI	CCGG	3 cut(s)	15, 349, 849
MspR9I	CCNGG	1 cut(s)	536
Mva1269I	GAATGC	1 cut(s)	437
MvaI	CCWGG	1 cut(s)	536
MvnI	CGCG	1 cut(s)	204
MwoI	GCNNNNNNNGC	2 cut(s)	616, 854
NdeII	GATC	2 cut(s)	386, 587
NlaIII	CATG	4 cut(s)	308, 414, 610, 736
NlaIV	GGNNCC	1 cut(s)	19
NmuCI	GTSAC	1 cut(s)	266
NsiI	ATGCAT	1 cut(s)	789
NspV	TTCGAA	2 cut(s)	208, 224
PctI	GAATGC	1 cut(s)	437
PdmI	GAANNNNTTC	1 cut(s)	825
PfeI	GAWTC	3 cut(s)	145, 826, 865
PfoI	TCCNGGA	1 cut(s)	534
PkrI	GCNGC	5 cut(s)	104, 189, 436, 612, 667
PleI	GAGTC	2 cut(s)	401, 533
PpsI	GAGTC	2 cut(s)	401, 533
Ppu21I	YACGTR	1 cut(s)	891
Psp6I	CCWGG	1 cut(s)	534
PspFI	CCCAGC	1 cut(s)	284
PspGI	CCWGG	1 cut(s)	534
PspN4I	GGNNCC	1 cut(s)	19
PspPI	GGNCC	1 cut(s)	117
PsuI	RGATCY	1 cut(s)	386
RsaI	GTAC	1 cut(s)	887
RsaNI	GTAC	1 cut(s)	886
RseI	CAYNNNNRTG	1 cut(s)	309
SaqAI	TTAA	4 cut(s)	251, 393, 530, 761
SatI	GCNGC	5 cut(s)	103, 188, 435, 611, 666
Sau3AI	GATC	2 cut(s)	386, 587
Sau96I	GGNCC	1 cut(s)	117
SchI	GAGTC	2 cut(s)	401, 533
ScrFI	CCNGG	1 cut(s)	536
SfaNI	GCATC	2 cut(s)	325, 734
SfuI	TTCGAA	2 cut(s)	208, 224
SinI	GGWCC	1 cut(s)	117
SmiI	ATTTAAAT	1 cut(s)	762
SmiMI	CAYNNNNRTG	1 cut(s)	309
Sse9I	AATT	9 cut(s)	74, 178, 226, 239, 364, 495, 582, 703, 807
SsiI	CCGC	2 cut(s)	382, 434
StyD4I	CCNGG	1 cut(s)	534
SwaI	ATTTAAAT	1 cut(s)	762
TaaI	ACNGT	1 cut(s)	796
TaiI	ACGT	1 cut(s)	893
TaqI	TCGA	3 cut(s)	208, 224, 230
TasI	AATT	9 cut(s)	74, 178, 226, 239, 364, 495, 582, 703, 807
TatI	WGTACW	1 cut(s)	885
TauI	GCSGC	1 cut(s)	437
TfiI	GAWTC	3 cut(s)	145, 826, 865
Tru1I	TTAA	4 cut(s)	251, 393, 530, 761
Tru9I	TTAA	4 cut(s)	251, 393, 530, 761
TscAI	CASTG	1 cut(s)	492
TseFI	GTSAC	1 cut(s)	266
TseI	GCWGC	4 cut(s)	102, 187, 610, 665
Tsp45I	GTSAC	1 cut(s)	266
TspDTI	ATGAA	2 cut(s)	595, 644
TspGWI	ACGGA	1 cut(s)	435
TspRI	CASTG	1 cut(s)	492
VpaK11BI	GGWCC	1 cut(s)	117
XapI	RAATTY	1 cut(s)	226
XmnI	GAANNNNTTC	1 cut(s)	825
Zsp2I	ATGCAT	1 cut(s)	789

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.