FvH4_6g45391

DVL family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0017049
Physical Location & Seq
Forward (+)
34852116 .. 34852581
466 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g45391.t1

Sequence Viewer

Length: 303 bp
ATGCAAGGACTTAGAACGGAGGGTTGTTTTGGGATTTTGGATTTTGGCAAATTTGATGCGCATGGATTTGAGAATCCTGACGAAGATGAGTTTGGATGGGTGGGGGCCCGTATCCAGTTAGAAATCAGTAGAATCGTTGAAGCTCTTATGGGAATGGCAGCCGGGTCGTCTTCTTCGTCTTCAAATGACAAAAAGAGGTCGAAGGTTTCTAGCAGAAAGCTGGGAGGGTATCTCAGGCAACAGAAGGGGAGGCTCTACATCATCAGAAGATGTGTGGTTATGCTTCTCTGCTGGCATGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DVL

Protein Analysis

101

Amino Acids

11.24

Weight (kDa)

8.93

Isoelectric Point (pI)

49.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DVL PF08137 79 - 97 1.2e-10 DVL family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017049)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G02493 AT5G16023
fragaria_vesca FvH4_6g45391
malus_domestica MD09G1083800.v1.1
prunus_persica Prupe.3G240100_v2.0.a1 Prupe.5G217900_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0163211 RchiOBHm_Chr7g0184681
rosa_laevigata RLG00000021383
rosa_multiflora Rmu_co8508111.1_g000001
rosa_roxburghii Rroxscaffold_2G00087460
rosa_samantha Rh2BG580000 Rh2CG549800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 60
AcsI RAATTY 1 cut(s) 50
AgsI TTSAA 2 cut(s) 140, 183
AjuI GAANNNNNNNTTGG 2 cut(s) 75, 107
AluBI AGCT 2 cut(s) 143, 220
AluI AGCT 2 cut(s) 143, 220
AoxI GGCC 1 cut(s) 105
ApaI GGGCCC 1 cut(s) 109
ApeKI GCWGC 1 cut(s) 158
ApoI RAATTY 1 cut(s) 50
AspLEI GCGC 1 cut(s) 61
AspS9I GGNCC 2 cut(s) 105, 106
AsuC2I CCSGG 1 cut(s) 163
BaeGI GKGCMC 1 cut(s) 109
BanII GRGCYC 1 cut(s) 109
BbsI GAAGAC 2 cut(s) 162, 171
BbvI GCAGC 1 cut(s) 170
BccI CCATC 1 cut(s) 90
BcgI CGANNNNNNTGC 2 cut(s) 147, 181
BciVI GTATCC 1 cut(s) 122
BcnI CCSGG 1 cut(s) 163
BfaI CTAG 2 cut(s) 210, 301
BfuI GTATCC 1 cut(s) 122
BisI GCNGC 1 cut(s) 159
BlsI GCNGC 1 cut(s) 160
Bme1390I CCNGG 1 cut(s) 163
BmgT120I GGNCC 2 cut(s) 105, 106
BmiI GGNNCC 2 cut(s) 106, 107
BmrFI CCNGG 1 cut(s) 163
BmsI GCATC 1 cut(s) 46
BpiI GAAGAC 2 cut(s) 162, 171
BplI GAGNNNNNCTC 2 cut(s) 216, 248
BpuMI CCSGG 1 cut(s) 163
Bse1I ACTGG 1 cut(s) 115
BseGI GGATG 1 cut(s) 101
BseMII CTCAG 1 cut(s) 247
BseNI ACTGG 1 cut(s) 115
BseSI GKGCMC 1 cut(s) 109
BseXI GCAGC 1 cut(s) 170
BseYI CCCAGC 1 cut(s) 220
BshFI GGCC 1 cut(s) 107
BsiSI CCGG 1 cut(s) 162
BsnI GGCC 1 cut(s) 107
Bsp120I GGGCCC 1 cut(s) 105
Bsp1286I GDGCHC 1 cut(s) 109
BspANI GGCC 1 cut(s) 107
BspCNI CTCAG 1 cut(s) 246
BspLI GGNNCC 2 cut(s) 106, 107
BsrI ACTGG 1 cut(s) 115
BstC8I GCNNGC 1 cut(s) 293
BstDEI CTNAG 2 cut(s) 11, 233
BstF5I GGATG 1 cut(s) 101
BstHHI GCGC 1 cut(s) 61
BstSCI CCNGG 1 cut(s) 161
BstSLI GKGCMC 1 cut(s) 109
BstV1I GCAGC 1 cut(s) 170
BstV2I GAAGAC 2 cut(s) 162, 171
BsuI GTATCC 1 cut(s) 122
BsuRI GGCC 1 cut(s) 107
BtsCI GGATG 1 cut(s) 101
Cac8I GCNNGC 1 cut(s) 293
CfoI GCGC 1 cut(s) 61
Cfr13I GGNCC 2 cut(s) 105, 106
CviAII CATG 2 cut(s) 62, 296
CviJI RGCY 5 cut(s) 107, 143, 161, 220, 253
CviKI_1 RGCY 5 cut(s) 107, 143, 161, 220, 253
DdeI CTNAG 2 cut(s) 11, 233
Eco24I GRGCYC 1 cut(s) 109
EcoO109I RGGNCCY 1 cut(s) 105
EcoT38I GRGCYC 1 cut(s) 109
FaeI CATG 2 cut(s) 65, 299
FaiI YATR 4 cut(s) 63, 149, 281, 297
FatI CATG 2 cut(s) 61, 295
Fnu4HI GCNGC 1 cut(s) 159
FokI GGATG 1 cut(s) 108
FriOI GRGCYC 1 cut(s) 109
Fsp4HI GCNGC 1 cut(s) 159
FspAI RTGCGCAY 1 cut(s) 60
FspBI CTAG 2 cut(s) 210, 301
FspI TGCGCA 1 cut(s) 60
GlaI GCGC 1 cut(s) 60
GluI GCNGC 1 cut(s) 159
GsaI CCCAGC 1 cut(s) 224
HaeIII GGCC 1 cut(s) 107
HapII CCGG 1 cut(s) 162
HhaI GCGC 1 cut(s) 61
Hin1II CATG 2 cut(s) 65, 299
Hin6I GCGC 1 cut(s) 59
HinP1I GCGC 1 cut(s) 59
HinfI GANTC 2 cut(s) 73, 132
HpaII CCGG 1 cut(s) 162
Hpy188I TCNGA 1 cut(s) 266
Hpy188III TCNNGA 1 cut(s) 77
HpyAV CCTTC 2 cut(s) 196, 238
HpyCH4V TGCA 1 cut(s) 4
HpyF3I CTNAG 2 cut(s) 11, 233
Hsp92II CATG 2 cut(s) 65, 299
HspAI GCGC 1 cut(s) 59
LpnPI CCDG 6 cut(s) 90, 128, 175, 206, 220, 277
Lsp1109I GCAGC 1 cut(s) 170
LweI GCATC 1 cut(s) 46
MaeI CTAG 2 cut(s) 210, 301
MboII GAAGA 5 cut(s) 95, 162, 165, 171, 279
MhlI GDGCHC 1 cut(s) 109
MluCI AATT 1 cut(s) 50
MnlI CCTC 4 cut(s) 13, 189, 218, 243
MspI CCGG 1 cut(s) 162
MspR9I CCNGG 1 cut(s) 163
NciI CCSGG 1 cut(s) 163
NlaIII CATG 2 cut(s) 65, 299
NlaIV GGNNCC 2 cut(s) 106, 107
NsbI TGCGCA 1 cut(s) 60
PcsI WCGNNNNNNNCGW 1 cut(s) 173
PfeI GAWTC 2 cut(s) 73, 132
PkrI GCNGC 1 cut(s) 160
PspFI CCCAGC 1 cut(s) 220
PspN4I GGNNCC 2 cut(s) 106, 107
PspOMI GGGCCC 1 cut(s) 105
PspPI GGNCC 2 cut(s) 105, 106
SatI GCNGC 1 cut(s) 159
Sau96I GGNCC 2 cut(s) 105, 106
ScrFI CCNGG 1 cut(s) 163
SduI GDGCHC 1 cut(s) 109
SetI ASST 4 cut(s) 145, 200, 207, 222
SfaNI GCATC 1 cut(s) 46
Sse9I AATT 1 cut(s) 50
SspMI CTAG 2 cut(s) 210, 301
StyD4I CCNGG 1 cut(s) 161
TaqI TCGA 1 cut(s) 200
TasI AATT 1 cut(s) 50
TfiI GAWTC 2 cut(s) 73, 132
TseI GCWGC 1 cut(s) 158
TspGWI ACGGA 1 cut(s) 32
XapI RAATTY 1 cut(s) 50
XspI CTAG 2 cut(s) 210, 301
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.