Rh2BG580000

DVL family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0017049
Physical Location & Seq
Forward (+)
79699921 .. 79702638
2718 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG580000.1

Sequence Viewer

Length: 537 bp
ATGAATCAAGGAACAAGGAGTGGACATAAGGCCCCGATAATGATCAACACTCAGCAAAAATCTTGGTTGCTTGTTAATTCGAAGGCAGTAACCATGTCCCTCACGAGGTTTTCACGTGCTGCCCTTGTCTTCTTTGTGCTTTACAACAATGTGGTTGATGCCCACATAAATGTTGATAAAGATGAAGATGACGTGTCAGATAGATATATTGGGGCGGAGGGGGGCGTTGATTTGGAATTTTGGAAATTGGAAAATATGATGTGCATGGATTTGGAATCCTGCAGAATCTCTTCTTCTTGGCTCAAAATCACCATTCAAACAAGGGCAGAAAAAAAGTCGATCTCCTTCTTTGTGGAAATCAGTAGAATTATTGAAGCTCTTATAGGAATGGCAGCCGAGTCGTCGTCTTCGTCGTCAAAAGATAACAAGAGGTCGAAGGTTTCAAGCAGAAAGCTGAGAGGGTATCTTAGGCAACAGAAAGGGAGGCTCTACATCATCAGGAGATGTGTGGTTATGCTCCTCTGCTGGCATGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DVL

Protein Analysis

178

Amino Acids

20.38

Weight (kDa)

9.48

Isoelectric Point (pI)

50.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DVL PF08137 157 - 175 2.7e-10 DVL family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017049)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G02493 AT5G16023
fragaria_vesca FvH4_6g45391
malus_domestica MD09G1083800.v1.1
prunus_persica Prupe.3G240100_v2.0.a1 Prupe.5G217900_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0163211 RchiOBHm_Chr7g0184681
rosa_laevigata RLG00000021383
rosa_multiflora Rmu_co8508111.1_g000001
rosa_roxburghii Rroxscaffold_2G00087460
rosa_samantha Rh2BG580000 Rh2CG549800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 215
AcsI RAATTY 1 cut(s) 236
AcvI CACGTG 1 cut(s) 116
AfiI CCNNNNNNNGG 1 cut(s) 105
AflIII ACRYGT 1 cut(s) 192
AgsI TTSAA 3 cut(s) 317, 374, 444
AjiI CACGTC 1 cut(s) 193
AluBI AGCT 2 cut(s) 377, 454
AluI AGCT 2 cut(s) 377, 454
AoxI GGCC 1 cut(s) 30
ApeKI GCWGC 2 cut(s) 119, 392
ApoI RAATTY 1 cut(s) 236
Asp700I GAANNNNTTC 1 cut(s) 289
AspS9I GGNCC 1 cut(s) 31
AsuHPI GGTGA 1 cut(s) 301
AsuII TTCGAA 1 cut(s) 80
BauI CACGAG 1 cut(s) 103
BbrPI CACGTG 1 cut(s) 116
BbsI GAAGAC 2 cut(s) 121, 399
BbvI GCAGC 2 cut(s) 106, 404
BcgI CGANNNNNNTGC 2 cut(s) 381, 415
BclI TGATCA 1 cut(s) 42
BfaI CTAG 1 cut(s) 535
BfmI CTRYAG 1 cut(s) 280
BisI GCNGC 2 cut(s) 120, 393
BlsI GCNGC 2 cut(s) 121, 394
BmgBI CACGTC 1 cut(s) 193
BmgT120I GGNCC 1 cut(s) 31
BmiI GGNNCC 1 cut(s) 33
BmsI GCATC 1 cut(s) 148
BpiI GAAGAC 2 cut(s) 121, 399
Bpu14I TTCGAA 1 cut(s) 80
BsaAI YACGTR 1 cut(s) 116
BsaBI GATNNNNATC 1 cut(s) 41
Bsc4I CCNNNNNNNGG 1 cut(s) 105
Bse8I GATNNNNATC 1 cut(s) 41
BseJI GATNNNNATC 1 cut(s) 41
BseLI CCNNNNNNNGG 1 cut(s) 105
BseMII CTCAG 2 cut(s) 65, 446
BseRI GAGGAG 1 cut(s) 509
BseXI GCAGC 2 cut(s) 106, 404
BshFI GGCC 1 cut(s) 32
BslFI GGGAC 1 cut(s) 82
BslI CCNNNNNNNGG 1 cut(s) 105
BsmFI GGGAC 1 cut(s) 82
BsnI GGCC 1 cut(s) 32
Bsp119I TTCGAA 1 cut(s) 80
Bsp143I GATC 2 cut(s) 42, 339
BspACI CCGC 1 cut(s) 215
BspANI GGCC 1 cut(s) 32
BspCNI CTCAG 2 cut(s) 64, 447
BspLI GGNNCC 1 cut(s) 33
BspMAI CTGCAG 1 cut(s) 284
BspT104I TTCGAA 1 cut(s) 80
BssMI GATC 2 cut(s) 42, 339
BssSI CACGAG 1 cut(s) 103
Bst2BI CACGAG 1 cut(s) 103
Bst6I CTCTTC 1 cut(s) 295
BstBAI YACGTR 1 cut(s) 116
BstBI TTCGAA 1 cut(s) 80
BstC8I GCNNGC 1 cut(s) 527
BstDEI CTNAG 3 cut(s) 51, 455, 467
BstKTI GATC 2 cut(s) 45, 342
BstMBI GATC 2 cut(s) 42, 339
BstSFI CTRYAG 1 cut(s) 280
BstV1I GCAGC 2 cut(s) 106, 404
BstV2I GAAGAC 2 cut(s) 121, 399
BsuRI GGCC 1 cut(s) 32
BtrI CACGTC 1 cut(s) 193
Cac8I GCNNGC 1 cut(s) 527
Cfr13I GGNCC 1 cut(s) 31
CviAII CATG 3 cut(s) 94, 265, 530
CviJI RGCY 6 cut(s) 32, 301, 377, 395, 454, 487
CviKI_1 RGCY 6 cut(s) 32, 301, 377, 395, 454, 487
DdeI CTNAG 3 cut(s) 51, 455, 467
DpnI GATC 2 cut(s) 44, 341
DpnII GATC 2 cut(s) 42, 339
Eam1104I CTCTTC 1 cut(s) 295
EarI CTCTTC 1 cut(s) 295
EciI GGCGGA 1 cut(s) 230
Eco72I CACGTG 1 cut(s) 116
EcoO109I RGGNCCY 1 cut(s) 31
FaeI CATG 3 cut(s) 97, 268, 533
FaiI YATR 9 cut(s) 27, 95, 167, 207, 257, 266, 383, 515, 531
FaqI GGGAC 1 cut(s) 82
FatI CATG 3 cut(s) 93, 264, 529
FbaI TGATCA 1 cut(s) 42
Fnu4HI GCNGC 2 cut(s) 120, 393
Fsp4HI GCNGC 2 cut(s) 120, 393
FspBI CTAG 1 cut(s) 535
GluI GCNGC 2 cut(s) 120, 393
HaeIII GGCC 1 cut(s) 32
Hin1II CATG 3 cut(s) 97, 268, 533
HinfI GANTC 4 cut(s) 4, 275, 285, 398
HphI GGTGA 1 cut(s) 301
Hpy166II GTNNAC 1 cut(s) 23
Hpy188I TCNGA 1 cut(s) 199
Hpy188III TCNNGA 2 cut(s) 103, 499
Hpy8I GTNNAC 1 cut(s) 23
Hpy99I CGWCG 2 cut(s) 406, 415
HpyAV CCTTC 3 cut(s) 76, 355, 430
HpyCH4IV ACGT 2 cut(s) 115, 192
HpyCH4V TGCA 2 cut(s) 264, 282
HpyF3I CTNAG 3 cut(s) 51, 455, 467
HpySE526I ACGT 2 cut(s) 115, 192
Hsp92II CATG 3 cut(s) 97, 268, 533
Ksp22I TGATCA 1 cut(s) 42
Kzo9I GATC 2 cut(s) 42, 339
LmnI GCTCC 1 cut(s) 522
LpnPI CCDG 3 cut(s) 292, 484, 511
Lsp1109I GCAGC 2 cut(s) 106, 404
LweI GCATC 1 cut(s) 148
MaeI CTAG 1 cut(s) 535
MaeII ACGT 2 cut(s) 115, 192
MaeIII GTNAC 1 cut(s) 88
MalI GATC 2 cut(s) 44, 341
MboI GATC 2 cut(s) 42, 339
MboII GAAGA 5 cut(s) 121, 197, 282, 285, 399
MluCI AATT 4 cut(s) 76, 236, 245, 366
MlyI GAGTC 1 cut(s) 407
MnlI CCTC 7 cut(s) 99, 110, 211, 423, 452, 477, 530
MroXI GAANNNNTTC 1 cut(s) 289
MseI TTAA 1 cut(s) 75
MslI CAYNNNNRTG 1 cut(s) 168
NdeII GATC 2 cut(s) 42, 339
NlaIII CATG 3 cut(s) 97, 268, 533
NlaIV GGNNCC 1 cut(s) 33
NmeAIII GCCGAG 1 cut(s) 421
NspV TTCGAA 1 cut(s) 80
PcsI WCGNNNNNNNCGW 2 cut(s) 407, 410
PdmI GAANNNNTTC 1 cut(s) 289
PfeI GAWTC 3 cut(s) 4, 275, 285
PkrI GCNGC 2 cut(s) 121, 394
PleI GAGTC 1 cut(s) 406
PmaCI CACGTG 1 cut(s) 116
PmlI CACGTG 1 cut(s) 116
PpsI GAGTC 1 cut(s) 406
Ppu21I YACGTR 1 cut(s) 116
PspCI CACGTG 1 cut(s) 116
PspN4I GGNNCC 1 cut(s) 33
PspPI GGNCC 1 cut(s) 31
PstI CTGCAG 1 cut(s) 284
RseI CAYNNNNRTG 1 cut(s) 168
SaqAI TTAA 1 cut(s) 75
SatI GCNGC 2 cut(s) 120, 393
Sau3AI GATC 2 cut(s) 42, 339
Sau96I GGNCC 1 cut(s) 31
SchI GAGTC 1 cut(s) 407
SetI ASST 7 cut(s) 110, 118, 195, 379, 434, 441, 456
SfaNI GCATC 1 cut(s) 148
SfcI CTRYAG 1 cut(s) 280
SfuI TTCGAA 1 cut(s) 80
SmiMI CAYNNNNRTG 1 cut(s) 168
Sse9I AATT 4 cut(s) 76, 236, 245, 366
SsiI CCGC 1 cut(s) 215
SspMI CTAG 1 cut(s) 535
TaiI ACGT 2 cut(s) 118, 195
TaqI TCGA 3 cut(s) 80, 338, 434
TasI AATT 4 cut(s) 76, 236, 245, 366
TfiI GAWTC 3 cut(s) 4, 275, 285
Tru1I TTAA 1 cut(s) 75
Tru9I TTAA 1 cut(s) 75
TseI GCWGC 2 cut(s) 119, 392
TspDTI ATGAA 2 cut(s) 17, 198
XapI RAATTY 1 cut(s) 236
XmnI GAANNNNTTC 1 cut(s) 289
XspI CTAG 1 cut(s) 535
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.