Rh2CG549800

DVL family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0017049
Physical Location & Seq
Forward (+)
72966799 .. 72982045
15247 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG549800.1

Sequence Viewer

Length: 366 bp
ATGGGAGAAGCGTCTGTTGTTATTATAGTCGTGGCCTCGTGGGATCTGGGAGGAGGAGAGAGGATTTTCCTCGAGGCATGGGATTGGTTGAAATCTCCAAGGCTGAACGTGTCCAGCTCCGATTGGAGGCTGCGTGCGTGTCGCGTTGTCCCTGGCTGTGTTCATAAGGGATGGTGCCTCATAGAAATCAGTAGAATTATTGAAGCTCTTATAGGAATGGCAGCCGAGTCTTCGTCTTCGTCGTCAAAAGATAACAAGAGGTCGAAGGTTTCAAGCAGAAAGCTGAGAGGGTATCTTAGACAACAGAAAGGGAGGCTCTACATCATCAGGAGATGTGTGGTTATGCTCCTCTGCTGGCATGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DVL

Protein Analysis

121

Amino Acids

13.73

Weight (kDa)

9.82

Isoelectric Point (pI)

69.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DVL PF08137 100 - 118 1.6e-10 DVL family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017049)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G02493 AT5G16023
fragaria_vesca FvH4_6g45391
malus_domestica MD09G1083800.v1.1
prunus_persica Prupe.3G240100_v2.0.a1 Prupe.5G217900_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0163211 RchiOBHm_Chr7g0184681
rosa_laevigata RLG00000021383
rosa_multiflora Rmu_co8508111.1_g000001
rosa_roxburghii Rroxscaffold_2G00087460
rosa_samantha Rh2BG580000 Rh2CG549800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 71
AccB1I GGYRCC 1 cut(s) 174
AccII CGCG 1 cut(s) 144
AclWI GGATC 1 cut(s) 51
AfiI CCNNNNNNNGG 1 cut(s) 126
AflIII ACRYGT 1 cut(s) 108
AgsI TTSAA 3 cut(s) 91, 203, 273
AjnI CCWGG 1 cut(s) 151
AluBI AGCT 3 cut(s) 117, 206, 283
AluI AGCT 3 cut(s) 117, 206, 283
AlwI GGATC 1 cut(s) 51
Ama87I CYCGRG 1 cut(s) 71
AoxI GGCC 1 cut(s) 33
ApeKI GCWGC 2 cut(s) 130, 221
AvaI CYCGRG 1 cut(s) 71
BanI GGYRCC 1 cut(s) 174
BauI CACGAG 1 cut(s) 37
BbsI GAAGAC 2 cut(s) 222, 228
BbvI GCAGC 2 cut(s) 117, 233
BccI CCATC 1 cut(s) 165
BciT130I CCWGG 1 cut(s) 153
BfaI CTAG 1 cut(s) 364
BisI GCNGC 2 cut(s) 131, 222
BlsI GCNGC 2 cut(s) 132, 223
Bme1390I CCNGG 1 cut(s) 153
BmeT110I CYCGRG 1 cut(s) 71
BmiI GGNNCC 1 cut(s) 176
BmrFI CCNGG 1 cut(s) 153
BpiI GAAGAC 2 cut(s) 222, 228
BsaJI CCNNGG 2 cut(s) 98, 151
BsaXI ACNNNNNCTCC 2 cut(s) 118, 148
Bsc4I CCNNNNNNNGG 1 cut(s) 126
BseBI CCWGG 1 cut(s) 153
BseDI CCNNGG 2 cut(s) 98, 151
BseGI GGATG 1 cut(s) 176
BseLI CCNNNNNNNGG 1 cut(s) 126
BseMII CTCAG 1 cut(s) 275
BseRI GAGGAG 3 cut(s) 66, 69, 338
BseXI GCAGC 2 cut(s) 117, 233
Bsh1236I CGCG 1 cut(s) 144
BshFI GGCC 1 cut(s) 35
BshNI GGYRCC 1 cut(s) 174
BsiHKCI CYCGRG 1 cut(s) 71
BslFI GGGAC 1 cut(s) 134
BslI CCNNNNNNNGG 1 cut(s) 126
BsmFI GGGAC 1 cut(s) 134
BsnI GGCC 1 cut(s) 35
BsoBI CYCGRG 1 cut(s) 71
Bsp143I GATC 1 cut(s) 43
BspANI GGCC 1 cut(s) 35
BspCNI CTCAG 1 cut(s) 276
BspFNI CGCG 1 cut(s) 144
BspLI GGNNCC 1 cut(s) 176
BspPI GGATC 1 cut(s) 51
BspT107I GGYRCC 1 cut(s) 174
BssECI CCNNGG 2 cut(s) 98, 151
BssMI GATC 1 cut(s) 43
BssSI CACGAG 1 cut(s) 37
BssT1I CCWWGG 1 cut(s) 98
Bst2BI CACGAG 1 cut(s) 37
Bst2UI CCWGG 1 cut(s) 153
BstC8I GCNNGC 2 cut(s) 135, 356
BstDEI CTNAG 2 cut(s) 284, 296
BstF5I GGATG 1 cut(s) 176
BstFNI CGCG 1 cut(s) 144
BstKTI GATC 1 cut(s) 46
BstMBI GATC 1 cut(s) 43
BstNI CCWGG 1 cut(s) 153
BstSCI CCNGG 1 cut(s) 151
BstUI CGCG 1 cut(s) 144
BstV1I GCAGC 2 cut(s) 117, 233
BstV2I GAAGAC 2 cut(s) 222, 228
BstX2I RGATCY 1 cut(s) 43
BstYI RGATCY 1 cut(s) 43
BsuRI GGCC 1 cut(s) 35
BtsCI GGATG 1 cut(s) 176
Cac8I GCNNGC 2 cut(s) 135, 356
CviAII CATG 2 cut(s) 78, 359
CviJI RGCY 9 cut(s) 35, 103, 117, 130, 156, 206, 224, 283, 316
CviKI_1 RGCY 9 cut(s) 35, 103, 117, 130, 156, 206, 224, 283, 316
DdeI CTNAG 2 cut(s) 284, 296
DpnI GATC 1 cut(s) 45
DpnII GATC 1 cut(s) 43
Eco130I CCWWGG 1 cut(s) 98
Eco88I CYCGRG 1 cut(s) 71
EcoRII CCWGG 1 cut(s) 151
EcoT14I CCWWGG 1 cut(s) 98
ErhI CCWWGG 1 cut(s) 98
FaeI CATG 2 cut(s) 81, 362
FaiI YATR 7 cut(s) 26, 79, 165, 182, 212, 344, 360
FaqI GGGAC 1 cut(s) 134
FatI CATG 2 cut(s) 77, 358
Fnu4HI GCNGC 2 cut(s) 131, 222
FokI GGATG 1 cut(s) 183
Fsp4HI GCNGC 2 cut(s) 131, 222
FspBI CTAG 1 cut(s) 364
GluI GCNGC 2 cut(s) 131, 222
HaeIII GGCC 1 cut(s) 35
Hin1II CATG 2 cut(s) 81, 362
HinfI GANTC 1 cut(s) 227
Hpy188I TCNGA 1 cut(s) 121
Hpy188III TCNNGA 1 cut(s) 328
Hpy99I CGWCG 1 cut(s) 244
HpyAV CCTTC 1 cut(s) 259
HpyCH4IV ACGT 1 cut(s) 108
HpyF3I CTNAG 2 cut(s) 284, 296
HpySE526I ACGT 1 cut(s) 108
Hsp92II CATG 2 cut(s) 81, 362
Kzo9I GATC 1 cut(s) 43
LmnI GCTCC 2 cut(s) 122, 351
LpnPI CCDG 6 cut(s) 32, 127, 138, 165, 313, 340
Lsp1109I GCAGC 2 cut(s) 117, 233
MaeI CTAG 1 cut(s) 364
MaeII ACGT 1 cut(s) 108
MalI GATC 1 cut(s) 45
MboI GATC 1 cut(s) 43
MboII GAAGA 2 cut(s) 222, 228
MflI RGATCY 1 cut(s) 43
MluCI AATT 1 cut(s) 195
MlyI GAGTC 1 cut(s) 236
MspR9I CCNGG 1 cut(s) 153
MvaI CCWGG 1 cut(s) 153
MvnI CGCG 1 cut(s) 144
NdeII GATC 1 cut(s) 43
NlaIII CATG 2 cut(s) 81, 362
NlaIV GGNNCC 1 cut(s) 176
NmeAIII GCCGAG 1 cut(s) 250
PaeR7I CTCGAG 1 cut(s) 71
PcsI WCGNNNNNNNCGW 1 cut(s) 239
PkrI GCNGC 2 cut(s) 132, 223
PleI GAGTC 1 cut(s) 235
PpsI GAGTC 1 cut(s) 235
Psp6I CCWGG 1 cut(s) 151
PspGI CCWGG 1 cut(s) 151
PspN4I GGNNCC 1 cut(s) 176
PspXI VCTCGAGB 1 cut(s) 71
PsuI RGATCY 1 cut(s) 43
SatI GCNGC 2 cut(s) 131, 222
Sau3AI GATC 1 cut(s) 43
SchI GAGTC 1 cut(s) 236
ScrFI CCNGG 1 cut(s) 153
SetI ASST 6 cut(s) 111, 119, 208, 263, 270, 285
Sfr274I CTCGAG 1 cut(s) 71
SlaI CTCGAG 1 cut(s) 71
SmlI CTYRAG 1 cut(s) 71
SmoI CTYRAG 1 cut(s) 71
Sse9I AATT 1 cut(s) 195
SspMI CTAG 1 cut(s) 364
StyD4I CCNGG 1 cut(s) 151
StyI CCWWGG 1 cut(s) 98
TaiI ACGT 1 cut(s) 111
TaqI TCGA 2 cut(s) 72, 263
TasI AATT 1 cut(s) 195
TseI GCWGC 2 cut(s) 130, 221
TspDTI ATGAA 1 cut(s) 152
XhoI CTCGAG 1 cut(s) 71
XspI CTAG 1 cut(s) 364
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.