RchiOBHm_Chr2g0163211

DVL family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0017049
Physical Location & Seq
Forward (+)
78797516 .. 78798101
586 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ53140

Sequence Viewer

Length: 258 bp
ATGAAGCTCTTCTTCTTGGCTCAACATCACCATTCAAACAAGGGCAGAAAAATTAAGTCGATCTCCTTCTTTGTAGAAATCAGTAGAATTATTGAAGCTCTTATAGGAATGGCAGTCGAGTCTTCGTCTTCGTCGTCAAAAGATAACAAGAGGTCGAAGGTTTCAAGCAGAAAGCTGAGAGGGTATCTTAGGCAACAGAAAGGGAGGCTCTACATCATCAGGAGATGTGTGGTTATGCTCCTCTGCTGGCATGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DVL

Protein Analysis

85

Amino Acids

9.94

Weight (kDa)

10.8

Isoelectric Point (pI)

65.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DVL PF08137 64 - 82 8.9e-11 DVL family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017049)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G02493 AT5G16023
fragaria_vesca FvH4_6g45391
malus_domestica MD09G1083800.v1.1
prunus_persica Prupe.3G240100_v2.0.a1 Prupe.5G217900_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0163211 RchiOBHm_Chr7g0184681
rosa_laevigata RLG00000021383
rosa_multiflora Rmu_co8508111.1_g000001
rosa_roxburghii Rroxscaffold_2G00087460
rosa_samantha Rh2BG580000 Rh2CG549800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 3 cut(s) 36, 95, 165
AluBI AGCT 3 cut(s) 7, 98, 175
AluI AGCT 3 cut(s) 7, 98, 175
Asp700I GAANNNNTTC 1 cut(s) 8
AsuHPI GGTGA 1 cut(s) 20
BbsI GAAGAC 2 cut(s) 114, 120
BfaI CTAG 1 cut(s) 256
BpiI GAAGAC 2 cut(s) 114, 120
BseMII CTCAG 1 cut(s) 167
BseRI GAGGAG 1 cut(s) 230
Bsp143I GATC 1 cut(s) 60
BspCNI CTCAG 1 cut(s) 168
BspQI GCTCTTC 1 cut(s) 14
BssMI GATC 1 cut(s) 60
Bst6I CTCTTC 1 cut(s) 14
BstC8I GCNNGC 1 cut(s) 248
BstDEI CTNAG 2 cut(s) 176, 188
BstKTI GATC 1 cut(s) 63
BstMBI GATC 1 cut(s) 60
BstV2I GAAGAC 2 cut(s) 114, 120
Cac8I GCNNGC 1 cut(s) 248
CviAII CATG 1 cut(s) 251
CviJI RGCY 5 cut(s) 7, 20, 98, 175, 208
CviKI_1 RGCY 5 cut(s) 7, 20, 98, 175, 208
DdeI CTNAG 2 cut(s) 176, 188
DpnI GATC 1 cut(s) 62
DpnII GATC 1 cut(s) 60
Eam1104I CTCTTC 1 cut(s) 14
EarI CTCTTC 1 cut(s) 14
FaeI CATG 1 cut(s) 254
FaiI YATR 3 cut(s) 104, 236, 252
FalI AAGNNNNNCTT 1 cut(s) 28
FatI CATG 1 cut(s) 250
FspBI CTAG 1 cut(s) 256
Hin1II CATG 1 cut(s) 254
HinfI GANTC 1 cut(s) 119
HphI GGTGA 1 cut(s) 20
Hpy188III TCNNGA 1 cut(s) 220
Hpy99I CGWCG 1 cut(s) 136
HpyAV CCTTC 2 cut(s) 76, 151
HpyF3I CTNAG 2 cut(s) 176, 188
Hsp92II CATG 1 cut(s) 254
Kzo9I GATC 1 cut(s) 60
LguI GCTCTTC 1 cut(s) 14
LmnI GCTCC 1 cut(s) 243
LpnPI CCDG 2 cut(s) 205, 232
MaeI CTAG 1 cut(s) 256
MalI GATC 1 cut(s) 62
MboI GATC 1 cut(s) 60
MboII GAAGA 3 cut(s) 4, 114, 120
MluCI AATT 2 cut(s) 51, 87
MlyI GAGTC 1 cut(s) 128
MnlI CCTC 4 cut(s) 144, 173, 198, 251
MroXI GAANNNNTTC 1 cut(s) 8
MseI TTAA 1 cut(s) 54
NdeII GATC 1 cut(s) 60
NlaIII CATG 1 cut(s) 254
PciSI GCTCTTC 1 cut(s) 14
PcsI WCGNNNNNNNCGW 1 cut(s) 131
PdmI GAANNNNTTC 1 cut(s) 8
PleI GAGTC 1 cut(s) 127
PpsI GAGTC 1 cut(s) 127
SapI GCTCTTC 1 cut(s) 14
SaqAI TTAA 1 cut(s) 54
Sau3AI GATC 1 cut(s) 60
SchI GAGTC 1 cut(s) 128
SetI ASST 5 cut(s) 9, 100, 155, 162, 177
SgeI CNNG 6 cut(s) 28, 52, 130, 160, 177, 232
Sse9I AATT 2 cut(s) 51, 87
SspMI CTAG 1 cut(s) 256
TaqI TCGA 3 cut(s) 59, 117, 155
TasI AATT 2 cut(s) 51, 87
Tru1I TTAA 1 cut(s) 54
Tru9I TTAA 1 cut(s) 54
TspDTI ATGAA 1 cut(s) 17
XmnI GAANNNNTTC 1 cut(s) 8
XspI CTAG 1 cut(s) 256
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.