RLG00000021383

DVL family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0017049
Physical Location & Seq
Forward (+)
74722523 .. 74723002
480 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021383

Sequence Viewer

Length: 318 bp
ATGACGTGTCAGATAGATAGAAAGGGTTTTGGGGGGGTTGATTTGGAATTTTCGAAATTGGAAAATATGGTGTGCATGGAGCCATGGATTTGGAATCCTGCAGAATATGAGTTGGGTTGGTTGCGGGCCATAGCCGAAATCAGTAGAATTGTTGAAGCTCTTATAGGAATGGCAGCCGAGTTGTCGTCTTCGTCGTCAAATGATAACAAGAGGTCGAAGGTTTCAAGCAGAAAGCTGAGAGGGTATCTTAGGCAACAGAAAGGGAGGCTCTACATCATCAGGAGATGTGTGGTTATGCTTCTCTGCTGGCATGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DVL

Protein Analysis

106

Amino Acids

12.15

Weight (kDa)

9.04

Isoelectric Point (pI)

54.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DVL PF08137 84 - 102 1.3e-10 DVL family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017049)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G02493 AT5G16023
fragaria_vesca FvH4_6g45391
malus_domestica MD09G1083800.v1.1
prunus_persica Prupe.3G240100_v2.0.a1 Prupe.5G217900_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0163211 RchiOBHm_Chr7g0184681
rosa_laevigata RLG00000021383
rosa_multiflora Rmu_co8508111.1_g000001
rosa_roxburghii Rroxscaffold_2G00087460
rosa_samantha Rh2BG580000 Rh2CG549800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 124
AcsI RAATTY 1 cut(s) 47
AflIII ACRYGT 1 cut(s) 5
AgsI TTSAA 2 cut(s) 155, 225
AjiI CACGTC 1 cut(s) 6
AluBI AGCT 2 cut(s) 158, 235
AluI AGCT 2 cut(s) 158, 235
AoxI GGCC 1 cut(s) 126
ApeKI GCWGC 1 cut(s) 173
ApoI RAATTY 1 cut(s) 47
AspS9I GGNCC 1 cut(s) 126
AsuII TTCGAA 1 cut(s) 53
BbsI GAAGAC 1 cut(s) 180
BbvI GCAGC 1 cut(s) 185
BfaI CTAG 1 cut(s) 316
BfmI CTRYAG 1 cut(s) 99
BisI GCNGC 1 cut(s) 174
BlsI GCNGC 1 cut(s) 175
BmgBI CACGTC 1 cut(s) 6
BmgT120I GGNCC 1 cut(s) 126
BmiI GGNNCC 1 cut(s) 81
BpiI GAAGAC 1 cut(s) 180
Bpu14I TTCGAA 1 cut(s) 53
BsaJI CCNNGG 1 cut(s) 83
BseDI CCNNGG 1 cut(s) 83
BseMII CTCAG 1 cut(s) 227
BseXI GCAGC 1 cut(s) 185
BshFI GGCC 1 cut(s) 128
BsnI GGCC 1 cut(s) 128
Bsp119I TTCGAA 1 cut(s) 53
Bsp19I CCATGG 1 cut(s) 83
BspACI CCGC 1 cut(s) 124
BspANI GGCC 1 cut(s) 128
BspCNI CTCAG 1 cut(s) 228
BspLI GGNNCC 1 cut(s) 81
BspMAI CTGCAG 1 cut(s) 103
BspT104I TTCGAA 1 cut(s) 53
BssECI CCNNGG 1 cut(s) 83
BssT1I CCWWGG 1 cut(s) 83
BstBI TTCGAA 1 cut(s) 53
BstC8I GCNNGC 2 cut(s) 126, 308
BstDEI CTNAG 2 cut(s) 236, 248
BstDSI CCRYGG 1 cut(s) 83
BstSFI CTRYAG 1 cut(s) 99
BstV1I GCAGC 1 cut(s) 185
BstV2I GAAGAC 1 cut(s) 180
BstXI CCANNNNNNTGG 1 cut(s) 90
BsuRI GGCC 1 cut(s) 128
BtgI CCRYGG 1 cut(s) 83
BtrI CACGTC 1 cut(s) 6
Cac8I GCNNGC 2 cut(s) 126, 308
Cfr13I GGNCC 1 cut(s) 126
CviAII CATG 3 cut(s) 76, 84, 311
CviJI RGCY 7 cut(s) 82, 128, 134, 158, 176, 235, 268
CviKI_1 RGCY 7 cut(s) 82, 128, 134, 158, 176, 235, 268
DdeI CTNAG 2 cut(s) 236, 248
Eco130I CCWWGG 1 cut(s) 83
EcoT14I CCWWGG 1 cut(s) 83
ErhI CCWWGG 1 cut(s) 83
FaeI CATG 3 cut(s) 79, 87, 314
FaiI YATR 8 cut(s) 68, 77, 85, 108, 131, 164, 296, 312
FatI CATG 3 cut(s) 75, 83, 310
FauI CCCGC 1 cut(s) 117
Fnu4HI GCNGC 1 cut(s) 174
Fsp4HI GCNGC 1 cut(s) 174
FspBI CTAG 1 cut(s) 316
GluI GCNGC 1 cut(s) 174
HaeIII GGCC 1 cut(s) 128
Hin1II CATG 3 cut(s) 79, 87, 314
HinfI GANTC 1 cut(s) 94
Hpy188I TCNGA 1 cut(s) 12
Hpy188III TCNNGA 1 cut(s) 280
Hpy99I CGWCG 1 cut(s) 196
HpyAV CCTTC 1 cut(s) 211
HpyCH4IV ACGT 1 cut(s) 5
HpyCH4V TGCA 2 cut(s) 75, 101
HpyF3I CTNAG 2 cut(s) 236, 248
HpySE526I ACGT 1 cut(s) 5
Hsp92II CATG 3 cut(s) 79, 87, 314
LmnI GCTCC 1 cut(s) 79
LpnPI CCDG 3 cut(s) 111, 265, 292
Lsp1109I GCAGC 1 cut(s) 185
MaeI CTAG 1 cut(s) 316
MaeII ACGT 1 cut(s) 5
MboII GAAGA 1 cut(s) 180
MluCI AATT 3 cut(s) 47, 56, 147
MnlI CCTC 3 cut(s) 204, 233, 258
NcoI CCATGG 1 cut(s) 83
NlaIII CATG 3 cut(s) 79, 87, 314
NlaIV GGNNCC 1 cut(s) 81
NmeAIII GCCGAG 1 cut(s) 202
NspV TTCGAA 1 cut(s) 53
PcsI WCGNNNNNNNCGW 1 cut(s) 191
PfeI GAWTC 1 cut(s) 94
PkrI GCNGC 1 cut(s) 175
PspN4I GGNNCC 1 cut(s) 81
PspPI GGNCC 1 cut(s) 126
PstI CTGCAG 1 cut(s) 103
SatI GCNGC 1 cut(s) 174
Sau96I GGNCC 1 cut(s) 126
SetI ASST 5 cut(s) 8, 160, 215, 222, 237
SfcI CTRYAG 1 cut(s) 99
SfuI TTCGAA 1 cut(s) 53
SgeI CNNG 9 cut(s) 18, 88, 96, 110, 137, 190, 220, 237, 292
Sse9I AATT 3 cut(s) 47, 56, 147
SsiI CCGC 1 cut(s) 124
SspMI CTAG 1 cut(s) 316
StyI CCWWGG 1 cut(s) 83
TaiI ACGT 1 cut(s) 8
TaqI TCGA 2 cut(s) 53, 215
TasI AATT 3 cut(s) 47, 56, 147
TfiI GAWTC 1 cut(s) 94
TseI GCWGC 1 cut(s) 173
XapI RAATTY 1 cut(s) 47
XspI CTAG 1 cut(s) 316
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.