FvH4_6g47010

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0013029
Physical Location & Seq
Reverse (-)
35736389 .. 35736850
462 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g47010.t1

Sequence Viewer

Length: 375 bp
ATGAGCTCCACTCCAGGAAACCTCAAGGCAACTCTGGCGGGAAGAGCAAAGTCAAGAAGAAGGCTCAGGTCGACGCGTGGCTGTTGCCCTAGATCAGCTCGAAGAAGCTTTAACAATGGTGGAAAAGGAGGAGGGCGCAAAGCGGTGAAGTGTTCCAAGGTGGTCTCAGCCAAATTGGAGACACTGAAGAACCTCATTCCAAACGGGAAGAGTAGTAGTGCTGGTGCGGTGCAGGCCGATAAGTTGTTCCAAGACACAGCGGACTACATCGTTCTGTTGCGAACCCAGGTGGTGATTTTGCAGAAACTCATTGAGGTTTATGGATCTAGTAGTACTGAGAAAGAAGATAACACTAATGCTGATGTTGTATTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

125

Amino Acids

13.27

Weight (kDa)

10.38

Isoelectric Point (pI)

46.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013029)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G29370 AT5G39240
fragaria_vesca FvH4_6g47010
malus_domestica MD09G1064600.v1.1 MD17G1057900.v1.1
prunus_persica Prupe.3G256400_v2.0.a1
pyrus_communis pycom111g05430 pycom17g05800
rosa_chinensis RchiOBHm_Chr2g0166071
rosa_laevigata RLG00000021582
rosa_multiflora Rmu_sc0006218.1_g000023
rosa_roxburghii Rroxscaffold_2G00085230
rosa_rugosa Rorug02G0520100.1
rosa_samantha Rh2AG585900 Rh2BG597700 Rh2CG568300 Rh2DG607700
rosa_wichuraiana Rw2G048850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 71
AccII CGCG 1 cut(s) 76
AciI CCGC 4 cut(s) 38, 143, 227, 260
AclWI GGATC 1 cut(s) 331
AcuI CTGAAG 1 cut(s) 206
AfaI GTAC 1 cut(s) 334
AflIII ACRYGT 1 cut(s) 74
AjnI CCWGG 2 cut(s) 13, 285
AluBI AGCT 3 cut(s) 6, 98, 108
AluI AGCT 3 cut(s) 6, 98, 108
Alw21I GWGCWC 1 cut(s) 8
Alw26I GTCTC 2 cut(s) 169, 173
AlwI GGATC 1 cut(s) 331
AoxI GGCC 1 cut(s) 234
AspLEI GCGC 1 cut(s) 138
AsuHPI GGTGA 2 cut(s) 157, 304
BanII GRGCYC 1 cut(s) 8
Bbv12I GWGCWC 1 cut(s) 8
BciT130I CCWGG 2 cut(s) 15, 287
BcoDI GTCTC 2 cut(s) 169, 173
BfaI CTAG 2 cut(s) 90, 327
BmcAI AGTACT 1 cut(s) 334
Bme1390I CCNGG 2 cut(s) 15, 287
BmrFI CCNGG 2 cut(s) 15, 287
BplI GAGNNNNNCTC 1 cut(s) 27
Bpu10I CCTNAGC 1 cut(s) 65
BpuEI CTTGAG 1 cut(s) 8
BsaI GGTCTC 1 cut(s) 169
BsaJI CCNNGG 2 cut(s) 156, 285
BseBI CCWGG 2 cut(s) 15, 287
BseDI CCNNGG 2 cut(s) 156, 285
BseMII CTCAG 3 cut(s) 79, 180, 327
BseRI GAGGAG 1 cut(s) 144
BsgI GTGCAG 1 cut(s) 251
Bsh1236I CGCG 1 cut(s) 76
BshFI GGCC 1 cut(s) 236
BsiHKAI GWGCWC 1 cut(s) 8
BsmAI GTCTC 2 cut(s) 169, 173
BsnI GGCC 1 cut(s) 236
Bso31I GGTCTC 1 cut(s) 169
Bsp1286I GDGCHC 1 cut(s) 8
Bsp143I GATC 2 cut(s) 92, 323
BspACI CCGC 4 cut(s) 38, 143, 227, 260
BspANI GGCC 1 cut(s) 236
BspCNI CTCAG 3 cut(s) 78, 179, 328
BspFNI CGCG 1 cut(s) 76
BspPI GGATC 1 cut(s) 331
BspQI GCTCTTC 1 cut(s) 37
BspTNI GGTCTC 1 cut(s) 169
BssECI CCNNGG 2 cut(s) 156, 285
BssMI GATC 2 cut(s) 92, 323
BssT1I CCWWGG 1 cut(s) 156
Bst2UI CCWGG 2 cut(s) 15, 287
Bst6I CTCTTC 2 cut(s) 37, 203
BstC8I GCNNGC 1 cut(s) 234
BstDEI CTNAG 3 cut(s) 65, 166, 336
BstFNI CGCG 1 cut(s) 76
BstHHI GCGC 1 cut(s) 138
BstKTI GATC 2 cut(s) 95, 326
BstMAI GTCTC 2 cut(s) 169, 173
BstMBI GATC 2 cut(s) 92, 323
BstMWI GCNNNNNNNGC 3 cut(s) 35, 44, 233
BstNI CCWGG 2 cut(s) 15, 287
BstSCI CCNGG 2 cut(s) 13, 285
BstUI CGCG 1 cut(s) 76
BstX2I RGATCY 1 cut(s) 323
BstYI RGATCY 1 cut(s) 323
BsuRI GGCC 1 cut(s) 236
BtsIMutI CAGTG 1 cut(s) 182
Cac8I GCNNGC 1 cut(s) 234
CfoI GCGC 1 cut(s) 138
CseI GACGC 1 cut(s) 82
Csp6I GTAC 1 cut(s) 333
CviJI RGCY 7 cut(s) 6, 64, 81, 98, 108, 170, 236
CviKI_1 RGCY 7 cut(s) 6, 64, 81, 98, 108, 170, 236
CviQI GTAC 1 cut(s) 333
DdeI CTNAG 3 cut(s) 65, 166, 336
DpnI GATC 2 cut(s) 94, 325
DpnII GATC 2 cut(s) 92, 323
Eam1104I CTCTTC 2 cut(s) 37, 203
EarI CTCTTC 2 cut(s) 37, 203
Ecl136II GAGCTC 1 cut(s) 6
Eco130I CCWWGG 1 cut(s) 156
Eco24I GRGCYC 1 cut(s) 8
Eco31I GGTCTC 1 cut(s) 169
Eco53kI GAGCTC 1 cut(s) 6
Eco57I CTGAAG 1 cut(s) 206
EcoICRI GAGCTC 1 cut(s) 6
EcoRII CCWGG 2 cut(s) 13, 285
EcoT14I CCWWGG 1 cut(s) 156
EcoT38I GRGCYC 1 cut(s) 8
ErhI CCWWGG 1 cut(s) 156
FaiI YATR 2 cut(s) 321, 373
FauI CCCGC 1 cut(s) 31
FblI GTMKAC 1 cut(s) 71
FriOI GRGCYC 1 cut(s) 8
FspBI CTAG 2 cut(s) 90, 327
GlaI GCGC 1 cut(s) 137
HaeIII GGCC 1 cut(s) 236
HgaI GACGC 1 cut(s) 82
HhaI GCGC 1 cut(s) 138
Hin6I GCGC 1 cut(s) 136
HinP1I GCGC 1 cut(s) 136
HincII GTYRAC 1 cut(s) 72
HindII GTYRAC 1 cut(s) 72
HindIII AAGCTT 1 cut(s) 106
HphI GGTGA 2 cut(s) 157, 304
Hpy166II GTNNAC 1 cut(s) 72
Hpy188III TCNNGA 1 cut(s) 54
Hpy8I GTNNAC 1 cut(s) 72
Hpy99I CGWCG 1 cut(s) 76
HpyAV CCTTC 1 cut(s) 54
HpyCH4V TGCA 2 cut(s) 232, 301
HpyF10VI GCNNNNNNNGC 3 cut(s) 35, 44, 233
HpyF3I CTNAG 3 cut(s) 65, 166, 336
HspAI GCGC 1 cut(s) 136
Kzo9I GATC 2 cut(s) 92, 323
LguI GCTCTTC 1 cut(s) 37
LmnI GCTCC 1 cut(s) 11
LpnPI CCDG 7 cut(s) 20, 27, 52, 207, 218, 272, 299
MaeI CTAG 2 cut(s) 90, 327
MalI GATC 2 cut(s) 94, 325
MboI GATC 2 cut(s) 92, 323
MboII GAAGA 6 cut(s) 54, 69, 114, 199, 220, 356
MflI RGATCY 1 cut(s) 323
MhlI GDGCHC 1 cut(s) 8
MluCI AATT 1 cut(s) 173
MluI ACGCGT 1 cut(s) 74
MnlI CCTC 5 cut(s) 32, 122, 125, 203, 307
MseI TTAA 1 cut(s) 111
MspA1I CMGCKG 1 cut(s) 260
MspR9I CCNGG 2 cut(s) 15, 287
MvaI CCWGG 2 cut(s) 15, 287
MvnI CGCG 1 cut(s) 76
MwoI GCNNNNNNNGC 3 cut(s) 35, 44, 233
NdeII GATC 2 cut(s) 92, 323
PciSI GCTCTTC 1 cut(s) 37
PfoI TCCNGGA 1 cut(s) 13
Psp124BI GAGCTC 1 cut(s) 8
Psp6I CCWGG 2 cut(s) 13, 285
PspGI CCWGG 2 cut(s) 13, 285
PsuI RGATCY 1 cut(s) 323
RsaI GTAC 1 cut(s) 334
RsaNI GTAC 1 cut(s) 333
SacI GAGCTC 1 cut(s) 8
SalI GTCGAC 1 cut(s) 70
SapI GCTCTTC 1 cut(s) 37
SaqAI TTAA 1 cut(s) 111
Sau3AI GATC 2 cut(s) 92, 323
ScaI AGTACT 1 cut(s) 334
ScrFI CCNGG 2 cut(s) 15, 287
SduI GDGCHC 1 cut(s) 8
SetI ASST 9 cut(s) 8, 24, 71, 100, 110, 162, 195, 291, 318
SmlI CTYRAG 1 cut(s) 23
SmoI CTYRAG 1 cut(s) 23
Sse9I AATT 1 cut(s) 173
SsiI CCGC 4 cut(s) 38, 143, 227, 260
SspMI CTAG 2 cut(s) 90, 327
SstI GAGCTC 1 cut(s) 8
StyD4I CCNGG 2 cut(s) 13, 285
StyI CCWWGG 1 cut(s) 156
TaqI TCGA 2 cut(s) 71, 100
TasI AATT 1 cut(s) 173
TatI WGTACW 1 cut(s) 332
Tru1I TTAA 1 cut(s) 111
Tru9I TTAA 1 cut(s) 111
TscAI CASTG 1 cut(s) 189
TspRI CASTG 1 cut(s) 189
XmiI GTMKAC 1 cut(s) 71
XspI CTAG 2 cut(s) 90, 327
ZrmI AGTACT 1 cut(s) 334
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.