Rh2DG607700

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0013029
Physical Location & Seq
Reverse (-)
84144069 .. 84145307
1239 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG607700.1

Sequence Viewer

Length: 360 bp
ATGAGCTCAACTCCTGGAAACCTCAAGGCAACTCTCGCAGGAAGAAGAAGAAGTCTCAGGCCGACGCGTGGCTGTAGCCCTAGAGCTCGAAGAAGCTTTAACAATGGTGGAGAAGGAGGAGGACGCAAAGTGTTGAAGTGTTCCAAGGTGGTCTCAGCCAAATTGGAAACCCTGAAAAACCTCATTCCAAACGGGAAGAGTAGTAGTGCTAGTGCGGTGCAGGCGGACAAGTTGTTCCAAGACACAGCGGATTATATCGTTCTGTTGCGAACCCAGGTGGTGATTTTGCAGAAACTCATTGAGGTTTATGGATCTAGTAGTATTGAGAAAGAAGATAATACTAATGCTGCTGTATTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

119

Amino Acids

12.76

Weight (kDa)

10.29

Isoelectric Point (pI)

49.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013029)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G29370 AT5G39240
fragaria_vesca FvH4_6g47010
malus_domestica MD09G1064600.v1.1 MD17G1057900.v1.1
prunus_persica Prupe.3G256400_v2.0.a1
pyrus_communis pycom111g05430 pycom17g05800
rosa_chinensis RchiOBHm_Chr2g0166071
rosa_laevigata RLG00000021582
rosa_multiflora Rmu_sc0006218.1_g000023
rosa_roxburghii Rroxscaffold_2G00085230
rosa_rugosa Rorug02G0520100.1
rosa_samantha Rh2AG585900 Rh2BG597700 Rh2CG568300 Rh2DG607700
rosa_wichuraiana Rw2G048850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 67
AciI CCGC 3 cut(s) 215, 224, 248
AclWI GGATC 1 cut(s) 319
AfiI CCNNNNNNNGG 1 cut(s) 68
AflIII ACRYGT 1 cut(s) 65
AgsI TTSAA 1 cut(s) 136
AjnI CCWGG 2 cut(s) 13, 273
AloI GAACNNNNNNTCC 2 cut(s) 218, 250
AluBI AGCT 3 cut(s) 6, 86, 96
AluI AGCT 3 cut(s) 6, 86, 96
Alw21I GWGCWC 2 cut(s) 8, 88
Alw26I GTCTC 2 cut(s) 59, 157
AlwI GGATC 1 cut(s) 319
AoxI GGCC 1 cut(s) 59
ApeKI GCWGC 1 cut(s) 347
AsuHPI GGTGA 1 cut(s) 292
BanII GRGCYC 2 cut(s) 8, 88
Bbv12I GWGCWC 2 cut(s) 8, 88
BbvI GCAGC 1 cut(s) 334
BciT130I CCWGG 2 cut(s) 15, 275
BcoDI GTCTC 2 cut(s) 59, 157
BfaI CTAG 3 cut(s) 81, 210, 315
BfmI CTRYAG 1 cut(s) 73
BisI GCNGC 1 cut(s) 348
BlsI GCNGC 1 cut(s) 349
Bme1390I CCNGG 2 cut(s) 15, 275
BmrFI CCNGG 2 cut(s) 15, 275
BplI GAGNNNNNCTC 1 cut(s) 27
BpuEI CTTGAG 1 cut(s) 8
BsaI GGTCTC 1 cut(s) 157
BsaJI CCNNGG 2 cut(s) 144, 273
Bsc4I CCNNNNNNNGG 1 cut(s) 68
BseBI CCWGG 2 cut(s) 15, 275
BseDI CCNNGG 2 cut(s) 144, 273
BseLI CCNNNNNNNGG 1 cut(s) 68
BseMII CTCAG 2 cut(s) 70, 168
BseRI GAGGAG 1 cut(s) 132
BseXI GCAGC 1 cut(s) 334
BsgI GTGCAG 1 cut(s) 239
Bsh1236I CGCG 1 cut(s) 67
BshFI GGCC 1 cut(s) 61
BsiHKAI GWGCWC 2 cut(s) 8, 88
BslI CCNNNNNNNGG 1 cut(s) 68
BsmAI GTCTC 2 cut(s) 59, 157
BsnI GGCC 1 cut(s) 61
Bso31I GGTCTC 1 cut(s) 157
Bsp1286I GDGCHC 2 cut(s) 8, 88
Bsp143I GATC 1 cut(s) 311
BspACI CCGC 3 cut(s) 215, 224, 248
BspANI GGCC 1 cut(s) 61
BspCNI CTCAG 2 cut(s) 69, 167
BspFNI CGCG 1 cut(s) 67
BspPI GGATC 1 cut(s) 319
BspTNI GGTCTC 1 cut(s) 157
BssECI CCNNGG 2 cut(s) 144, 273
BssMI GATC 1 cut(s) 311
BssT1I CCWWGG 1 cut(s) 144
Bst2UI CCWGG 2 cut(s) 15, 275
Bst6I CTCTTC 1 cut(s) 191
BstC8I GCNNGC 1 cut(s) 222
BstDEI CTNAG 2 cut(s) 56, 154
BstFNI CGCG 1 cut(s) 67
BstKTI GATC 1 cut(s) 314
BstMAI GTCTC 2 cut(s) 59, 157
BstMBI GATC 1 cut(s) 311
BstMWI GCNNNNNNNGC 2 cut(s) 35, 221
BstNI CCWGG 2 cut(s) 15, 275
BstSCI CCNGG 2 cut(s) 13, 273
BstSFI CTRYAG 1 cut(s) 73
BstUI CGCG 1 cut(s) 67
BstV1I GCAGC 1 cut(s) 334
BstX2I RGATCY 1 cut(s) 311
BstYI RGATCY 1 cut(s) 311
BsuRI GGCC 1 cut(s) 61
Cac8I GCNNGC 1 cut(s) 222
CseI GACGC 2 cut(s) 73, 132
CviJI RGCY 7 cut(s) 6, 61, 72, 78, 86, 96, 158
CviKI_1 RGCY 7 cut(s) 6, 61, 72, 78, 86, 96, 158
DdeI CTNAG 2 cut(s) 56, 154
DpnI GATC 1 cut(s) 313
DpnII GATC 1 cut(s) 311
Eam1104I CTCTTC 1 cut(s) 191
EarI CTCTTC 1 cut(s) 191
EciI GGCGGA 1 cut(s) 239
Ecl136II GAGCTC 2 cut(s) 6, 86
Eco130I CCWWGG 1 cut(s) 144
Eco24I GRGCYC 2 cut(s) 8, 88
Eco31I GGTCTC 1 cut(s) 157
Eco53kI GAGCTC 2 cut(s) 6, 86
EcoICRI GAGCTC 2 cut(s) 6, 86
EcoRII CCWGG 2 cut(s) 13, 273
EcoT14I CCWWGG 1 cut(s) 144
EcoT38I GRGCYC 2 cut(s) 8, 88
ErhI CCWWGG 1 cut(s) 144
FaiI YATR 3 cut(s) 255, 309, 358
Fnu4HI GCNGC 1 cut(s) 348
FriOI GRGCYC 2 cut(s) 8, 88
Fsp4HI GCNGC 1 cut(s) 348
FspBI CTAG 3 cut(s) 81, 210, 315
GluI GCNGC 1 cut(s) 348
HaeIII GGCC 1 cut(s) 61
HgaI GACGC 2 cut(s) 73, 132
HindIII AAGCTT 1 cut(s) 94
HphI GGTGA 1 cut(s) 292
Hpy99I CGWCG 1 cut(s) 67
HpyAV CCTTC 1 cut(s) 107
HpyCH4V TGCA 2 cut(s) 220, 289
HpyF10VI GCNNNNNNNGC 2 cut(s) 35, 221
HpyF3I CTNAG 2 cut(s) 56, 154
Kzo9I GATC 1 cut(s) 311
LpnPI CCDG 7 cut(s) 24, 27, 43, 185, 206, 260, 287
Lsp1109I GCAGC 1 cut(s) 334
MaeI CTAG 3 cut(s) 81, 210, 315
MalI GATC 1 cut(s) 313
MboI GATC 1 cut(s) 311
MboII GAAGA 6 cut(s) 54, 57, 60, 102, 208, 344
MflI RGATCY 1 cut(s) 311
MhlI GDGCHC 2 cut(s) 8, 88
MluCI AATT 1 cut(s) 161
MluI ACGCGT 1 cut(s) 65
MnlI CCTC 5 cut(s) 32, 110, 113, 191, 295
MseI TTAA 1 cut(s) 99
MspA1I CMGCKG 1 cut(s) 248
MspR9I CCNGG 2 cut(s) 15, 275
MvaI CCWGG 2 cut(s) 15, 275
MvnI CGCG 1 cut(s) 67
MwoI GCNNNNNNNGC 2 cut(s) 35, 221
NdeII GATC 1 cut(s) 311
PfoI TCCNGGA 1 cut(s) 13
PkrI GCNGC 1 cut(s) 349
Psp124BI GAGCTC 2 cut(s) 8, 88
Psp6I CCWGG 2 cut(s) 13, 273
PspGI CCWGG 2 cut(s) 13, 273
PsuI RGATCY 1 cut(s) 311
SacI GAGCTC 2 cut(s) 8, 88
SaqAI TTAA 1 cut(s) 99
SatI GCNGC 1 cut(s) 348
Sau3AI GATC 1 cut(s) 311
ScrFI CCNGG 2 cut(s) 15, 275
SduI GDGCHC 2 cut(s) 8, 88
SetI ASST 8 cut(s) 8, 24, 88, 98, 150, 183, 279, 306
SfcI CTRYAG 1 cut(s) 73
SmlI CTYRAG 1 cut(s) 23
SmoI CTYRAG 1 cut(s) 23
Sse9I AATT 1 cut(s) 161
SsiI CCGC 3 cut(s) 215, 224, 248
SspMI CTAG 3 cut(s) 81, 210, 315
SstI GAGCTC 2 cut(s) 8, 88
StyD4I CCNGG 2 cut(s) 13, 273
StyI CCWWGG 1 cut(s) 144
TaqI TCGA 1 cut(s) 88
TasI AATT 1 cut(s) 161
Tru1I TTAA 1 cut(s) 99
Tru9I TTAA 1 cut(s) 99
TseI GCWGC 1 cut(s) 347
XspI CTAG 3 cut(s) 81, 210, 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.