MD17G1057900.v1.1

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0013029
Physical Location & Seq
Forward (+)
4724360 .. 4724698
339 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1057900.v1.1.491

Sequence Viewer

Length: 339 bp
ATGAGCTCGGCTCCTGGAAATTACCTCAAAGCCACCCTCGCCGGAAGAAGAAGAACCACTTCGAGAAGAAGACTTGTGTCGCGTAGGGGTCGAGCTCCGGTAAGAAAATTCAACAATGGCGGCCGCAAACGGAGGTGTTTGAAGGCGGTCTCCGCCAAGCTGGAGACCCTGAAGAGCCTCGTTAATCCGACCCAGGTCGGGAAAACGCTAAAAGCCGACGAATTGTTCCAGGAAACGGCGGATTACATCGTCCTGCTGCGGACCCAGGTCGTCATTTTGCAGAGACTCGTCGAGTTTTATGGATCTAGTGAGAAGGAAAATGCTGCTGCTGTATTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

113

Amino Acids

12.55

Weight (kDa)

11.31

Isoelectric Point (pI)

60.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013029)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G29370 AT5G39240
fragaria_vesca FvH4_6g47010
malus_domestica MD09G1064600.v1.1 MD17G1057900.v1.1
prunus_persica Prupe.3G256400_v2.0.a1
pyrus_communis pycom111g05430 pycom17g05800
rosa_chinensis RchiOBHm_Chr2g0166071
rosa_laevigata RLG00000021582
rosa_multiflora Rmu_sc0006218.1_g000023
rosa_roxburghii Rroxscaffold_2G00085230
rosa_rugosa Rorug02G0520100.1
rosa_samantha Rh2AG585900 Rh2BG597700 Rh2CG568300 Rh2DG607700
rosa_wichuraiana Rw2G048850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 82
AciI CCGC 6 cut(s) 120, 124, 146, 153, 239, 259
AclWI GGATC 1 cut(s) 310
AcoI YGGCCR 1 cut(s) 121
AcsI RAATTY 1 cut(s) 107
AcuI CTGAAG 1 cut(s) 191
AfiI CCNNNNNNNGG 2 cut(s) 198, 235
AgsI TTSAA 2 cut(s) 112, 142
AjnI CCWGG 4 cut(s) 13, 192, 228, 264
AluBI AGCT 3 cut(s) 6, 95, 160
AluI AGCT 3 cut(s) 6, 95, 160
Alw21I GWGCWC 2 cut(s) 8, 97
Alw26I GTCTC 3 cut(s) 154, 158, 277
AlwI GGATC 1 cut(s) 310
AoxI GGCC 1 cut(s) 121
ApeKI GCWGC 3 cut(s) 256, 323, 326
ApoI RAATTY 1 cut(s) 107
Asp700I GAANNNNTTC 1 cut(s) 58
AspS9I GGNCC 1 cut(s) 261
AvaII GGWCC 1 cut(s) 261
BanII GRGCYC 2 cut(s) 8, 97
BbsI GAAGAC 1 cut(s) 76
Bbv12I GWGCWC 2 cut(s) 8, 97
BbvI GCAGC 3 cut(s) 243, 310, 313
BceAI ACGGC 1 cut(s) 252
BciT130I CCWGG 4 cut(s) 15, 194, 230, 266
BcoDI GTCTC 3 cut(s) 154, 158, 277
BfaI CTAG 1 cut(s) 306
BisI GCNGC 5 cut(s) 121, 124, 257, 324, 327
BlsI GCNGC 5 cut(s) 122, 125, 258, 325, 328
Bme1390I CCNGG 4 cut(s) 15, 194, 230, 266
Bme18I GGWCC 1 cut(s) 261
BmgT120I GGNCC 1 cut(s) 261
BmiI GGNNCC 2 cut(s) 12, 263
BmrFI CCNGG 4 cut(s) 15, 194, 230, 266
BoxI GACNNNNGTC 3 cut(s) 76, 194, 266
BpiI GAAGAC 1 cut(s) 76
BplI GAGNNNNNCTC 1 cut(s) 27
BpmI CTGGAG 1 cut(s) 182
BsaI GGTCTC 2 cut(s) 154, 158
BsaJI CCNNGG 2 cut(s) 192, 264
BsaWI WCCGGW 1 cut(s) 97
Bsc4I CCNNNNNNNGG 2 cut(s) 198, 235
BseBI CCWGG 4 cut(s) 15, 194, 230, 266
BseDI CCNNGG 2 cut(s) 192, 264
BseLI CCNNNNNNNGG 2 cut(s) 198, 235
BseX3I CGGCCG 1 cut(s) 121
BseXI GCAGC 3 cut(s) 243, 310, 313
Bsh1236I CGCG 1 cut(s) 82
Bsh1285I CGRYCG 1 cut(s) 124
BshFI GGCC 1 cut(s) 123
BsiEI CGRYCG 1 cut(s) 124
BsiHKAI GWGCWC 2 cut(s) 8, 97
BsiSI CCGG 2 cut(s) 42, 98
BslI CCNNNNNNNGG 2 cut(s) 198, 235
BsmAI GTCTC 3 cut(s) 154, 158, 277
BsnI GGCC 1 cut(s) 123
Bso31I GGTCTC 2 cut(s) 154, 158
Bsp1286I GDGCHC 2 cut(s) 8, 97
Bsp143I GATC 1 cut(s) 302
BspACI CCGC 6 cut(s) 120, 124, 146, 153, 239, 259
BspANI GGCC 1 cut(s) 123
BspFNI CGCG 1 cut(s) 82
BspLI GGNNCC 2 cut(s) 12, 263
BspPI GGATC 1 cut(s) 310
BspQI GCTCTTC 1 cut(s) 167
BspTNI GGTCTC 2 cut(s) 154, 158
BssECI CCNNGG 2 cut(s) 192, 264
BssMI GATC 1 cut(s) 302
Bst2UI CCWGG 4 cut(s) 15, 194, 230, 266
Bst6I CTCTTC 1 cut(s) 167
BstFNI CGCG 1 cut(s) 82
BstKTI GATC 1 cut(s) 305
BstMAI GTCTC 3 cut(s) 154, 158, 277
BstMBI GATC 1 cut(s) 302
BstMCI CGRYCG 1 cut(s) 124
BstMWI GCNNNNNNNGC 2 cut(s) 38, 152
BstNI CCWGG 4 cut(s) 15, 194, 230, 266
BstPAI GACNNNNGTC 3 cut(s) 76, 194, 266
BstSCI CCNGG 4 cut(s) 13, 192, 228, 264
BstUI CGCG 1 cut(s) 82
BstV1I GCAGC 3 cut(s) 243, 310, 313
BstV2I GAAGAC 1 cut(s) 76
BstX2I RGATCY 1 cut(s) 302
BstYI RGATCY 1 cut(s) 302
BstZI CGGCCG 1 cut(s) 121
BsuRI GGCC 1 cut(s) 123
CciNI GCGGCCGC 1 cut(s) 121
Cfr13I GGNCC 1 cut(s) 261
CviJI RGCY 8 cut(s) 6, 11, 32, 95, 123, 160, 177, 215
CviKI_1 RGCY 8 cut(s) 6, 11, 32, 95, 123, 160, 177, 215
DpnI GATC 1 cut(s) 304
DpnII GATC 1 cut(s) 302
EaeI YGGCCR 1 cut(s) 121
EagI CGGCCG 1 cut(s) 121
Eam1104I CTCTTC 1 cut(s) 167
EarI CTCTTC 1 cut(s) 167
EciI GGCGGA 2 cut(s) 142, 254
Ecl136II GAGCTC 2 cut(s) 6, 95
EclXI CGGCCG 1 cut(s) 121
Eco24I GRGCYC 2 cut(s) 8, 97
Eco31I GGTCTC 2 cut(s) 154, 158
Eco47I GGWCC 1 cut(s) 261
Eco52I CGGCCG 1 cut(s) 121
Eco53kI GAGCTC 2 cut(s) 6, 95
Eco57I CTGAAG 1 cut(s) 191
EcoICRI GAGCTC 2 cut(s) 6, 95
EcoRII CCWGG 4 cut(s) 13, 192, 228, 264
EcoT38I GRGCYC 2 cut(s) 8, 97
FaiI YATR 2 cut(s) 300, 337
FalI AAGNNNNNCTT 2 cut(s) 43, 75
Fnu4HI GCNGC 5 cut(s) 121, 124, 257, 324, 327
FriOI GRGCYC 2 cut(s) 8, 97
Fsp4HI GCNGC 5 cut(s) 121, 124, 257, 324, 327
FspBI CTAG 1 cut(s) 306
GluI GCNGC 5 cut(s) 121, 124, 257, 324, 327
GsuI CTGGAG 1 cut(s) 182
HaeIII GGCC 1 cut(s) 123
HapII CCGG 2 cut(s) 42, 98
HinfI GANTC 1 cut(s) 285
HpaII CCGG 2 cut(s) 42, 98
Hpy188I TCNGA 1 cut(s) 189
Hpy188III TCNNGA 2 cut(s) 63, 199
Hpy99I CGWCG 2 cut(s) 221, 293
HpyAV CCTTC 2 cut(s) 136, 307
HpyCH4V TGCA 1 cut(s) 280
HpyF10VI GCNNNNNNNGC 2 cut(s) 38, 152
Kzo9I GATC 1 cut(s) 302
LguI GCTCTTC 1 cut(s) 167
LmnI GCTCC 2 cut(s) 16, 100
Lsp1109I GCAGC 3 cut(s) 243, 310, 313
MaeI CTAG 1 cut(s) 306
MalI GATC 1 cut(s) 304
MboI GATC 1 cut(s) 302
MboII GAAGA 6 cut(s) 57, 60, 63, 78, 81, 184
MflI RGATCY 1 cut(s) 302
MhlI GDGCHC 2 cut(s) 8, 97
MluCI AATT 3 cut(s) 19, 107, 221
MlyI GAGTC 1 cut(s) 279
MmeI TCCRAC 1 cut(s) 212
MnlI CCTC 4 cut(s) 35, 47, 126, 188
MroXI GAANNNNTTC 1 cut(s) 58
MseI TTAA 1 cut(s) 183
MspI CCGG 2 cut(s) 42, 98
MspR9I CCNGG 4 cut(s) 15, 194, 230, 266
MvaI CCWGG 4 cut(s) 15, 194, 230, 266
MvnI CGCG 1 cut(s) 82
MwoI GCNNNNNNNGC 2 cut(s) 38, 152
NdeII GATC 1 cut(s) 302
NlaIV GGNNCC 2 cut(s) 12, 263
NotI GCGGCCGC 1 cut(s) 121
PciSI GCTCTTC 1 cut(s) 167
PdmI GAANNNNTTC 1 cut(s) 58
PfoI TCCNGGA 2 cut(s) 13, 228
PkrI GCNGC 5 cut(s) 122, 125, 258, 325, 328
PleI GAGTC 1 cut(s) 279
PpsI GAGTC 1 cut(s) 279
PshAI GACNNNNGTC 3 cut(s) 76, 194, 266
Psp124BI GAGCTC 2 cut(s) 8, 97
Psp6I CCWGG 4 cut(s) 13, 192, 228, 264
PspGI CCWGG 4 cut(s) 13, 192, 228, 264
PspN4I GGNNCC 2 cut(s) 12, 263
PspPI GGNCC 1 cut(s) 261
PsuI RGATCY 1 cut(s) 302
SacI GAGCTC 2 cut(s) 8, 97
SapI GCTCTTC 1 cut(s) 167
SaqAI TTAA 1 cut(s) 183
SatI GCNGC 5 cut(s) 121, 124, 257, 324, 327
Sau3AI GATC 1 cut(s) 302
Sau96I GGNCC 1 cut(s) 261
SchI GAGTC 1 cut(s) 279
ScrFI CCNGG 4 cut(s) 15, 194, 230, 266
SduI GDGCHC 2 cut(s) 8, 97
SetI ASST 7 cut(s) 8, 27, 97, 137, 162, 198, 270
SinI GGWCC 1 cut(s) 261
Sse9I AATT 3 cut(s) 19, 107, 221
SsiI CCGC 6 cut(s) 120, 124, 146, 153, 239, 259
SspMI CTAG 1 cut(s) 306
SstI GAGCTC 2 cut(s) 8, 97
StyD4I CCNGG 4 cut(s) 13, 192, 228, 264
TaqI TCGA 3 cut(s) 62, 91, 291
TasI AATT 3 cut(s) 19, 107, 221
TauI GCSGC 2 cut(s) 123, 126
Tru1I TTAA 1 cut(s) 183
Tru9I TTAA 1 cut(s) 183
TseI GCWGC 3 cut(s) 256, 323, 326
TspGWI ACGGA 1 cut(s) 145
VpaK11BI GGWCC 1 cut(s) 261
XapI RAATTY 1 cut(s) 107
XmnI GAANNNNTTC 1 cut(s) 58
XspI CTAG 1 cut(s) 306
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.