pycom111g05430

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
SuperScaffold_111
OG0013029
Physical Location & Seq
Forward (+)
3478843 .. 3479190
348 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom111g05430.1

Sequence Viewer

Length: 348 bp
ATGAGCTCTGCTCCTGGAAATTACCTCAAAGCCACCCTGGCCGGAAGAAGAAGAAGAAGAAGAAACACCTCGAGAAGAAGACTTATGTCGCGCCGGTGTCGAGCTCCGGTTAGAAGATTCAACAGCGGCGACCGCAAACGGCGTTGTTCGAAGGCGGTCTCGGCCAAGCTGGAGACGCTGAAGAGCCTCGTTAATCCGACCCACGTCGGAAAATCGCTAAAAGCCGACGAATTGTTCCAGGAAACGGCGGATTACATCGTTCTGCTGCGGACCCAGGTCGTGATTTTGCAGAGACTCGTCGAGTTTTATGGATCTAGTGAGAAGGAAAATGTTGCTGCTGTATCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

116

Amino Acids

13.14

Weight (kDa)

11.47

Isoelectric Point (pI)

84.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013029)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G29370 AT5G39240
fragaria_vesca FvH4_6g47010
malus_domestica MD09G1064600.v1.1 MD17G1057900.v1.1
prunus_persica Prupe.3G256400_v2.0.a1
pyrus_communis pycom111g05430 pycom17g05800
rosa_chinensis RchiOBHm_Chr2g0166071
rosa_laevigata RLG00000021582
rosa_multiflora Rmu_sc0006218.1_g000023
rosa_roxburghii Rroxscaffold_2G00085230
rosa_rugosa Rorug02G0520100.1
rosa_samantha Rh2AG585900 Rh2BG597700 Rh2CG568300 Rh2DG607700
rosa_wichuraiana Rw2G048850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 91
AciI CCGC 5 cut(s) 126, 133, 155, 248, 268
AclWI GGATC 1 cut(s) 319
AcoI YGGCCR 2 cut(s) 39, 162
AcuI CTGAAG 1 cut(s) 200
AfiI CCNNNNNNNGG 1 cut(s) 244
AgsI TTSAA 1 cut(s) 121
AjiI CACGTC 1 cut(s) 205
AjnI CCWGG 4 cut(s) 13, 36, 237, 273
AluBI AGCT 3 cut(s) 6, 104, 169
AluI AGCT 3 cut(s) 6, 104, 169
Alw21I GWGCWC 2 cut(s) 8, 106
Alw26I GTCTC 3 cut(s) 163, 167, 286
AlwI GGATC 1 cut(s) 319
Ama87I CYCGRG 1 cut(s) 70
AoxI GGCC 2 cut(s) 39, 162
ApeKI GCWGC 2 cut(s) 265, 335
AspLEI GCGC 1 cut(s) 93
AspS9I GGNCC 1 cut(s) 270
AsuII TTCGAA 1 cut(s) 149
AvaI CYCGRG 1 cut(s) 70
AvaII GGWCC 1 cut(s) 270
BanII GRGCYC 2 cut(s) 8, 106
BbsI GAAGAC 1 cut(s) 85
Bbv12I GWGCWC 2 cut(s) 8, 106
BbvI GCAGC 2 cut(s) 252, 322
BceAI ACGGC 2 cut(s) 155, 261
BciT130I CCWGG 4 cut(s) 15, 38, 239, 275
BcoDI GTCTC 3 cut(s) 163, 167, 286
BfaI CTAG 1 cut(s) 315
BglI GCCNNNNNGGC 1 cut(s) 38
BisI GCNGC 3 cut(s) 127, 266, 336
BlsI GCNGC 3 cut(s) 128, 267, 337
Bme1390I CCNGG 4 cut(s) 15, 38, 239, 275
Bme18I GGWCC 1 cut(s) 270
BmeT110I CYCGRG 1 cut(s) 70
BmgBI CACGTC 1 cut(s) 205
BmgT120I GGNCC 1 cut(s) 270
BmiI GGNNCC 1 cut(s) 272
BmrFI CCNGG 4 cut(s) 15, 38, 239, 275
BoxI GACNNNNGTC 3 cut(s) 85, 203, 275
BpiI GAAGAC 1 cut(s) 85
BplI GAGNNNNNCTC 1 cut(s) 27
BpmI CTGGAG 1 cut(s) 191
Bpu14I TTCGAA 1 cut(s) 149
BsaI GGTCTC 1 cut(s) 163
BsaJI CCNNGG 2 cut(s) 36, 273
BsaWI WCCGGW 1 cut(s) 106
Bsc4I CCNNNNNNNGG 1 cut(s) 244
Bse118I RCCGGY 1 cut(s) 93
BseBI CCWGG 4 cut(s) 15, 38, 239, 275
BseDI CCNNGG 2 cut(s) 36, 273
BseLI CCNNNNNNNGG 1 cut(s) 244
BseXI GCAGC 2 cut(s) 252, 322
Bsh1236I CGCG 1 cut(s) 91
Bsh1285I CGRYCG 1 cut(s) 133
BshFI GGCC 2 cut(s) 41, 164
BsiEI CGRYCG 1 cut(s) 133
BsiHKAI GWGCWC 2 cut(s) 8, 106
BsiHKCI CYCGRG 1 cut(s) 70
BsiSI CCGG 3 cut(s) 42, 94, 107
BslI CCNNNNNNNGG 1 cut(s) 244
BsmAI GTCTC 3 cut(s) 163, 167, 286
BsmBI CGTCTC 1 cut(s) 167
BsnI GGCC 2 cut(s) 41, 164
Bso31I GGTCTC 1 cut(s) 163
BsoBI CYCGRG 1 cut(s) 70
Bsp119I TTCGAA 1 cut(s) 149
Bsp1286I GDGCHC 2 cut(s) 8, 106
Bsp143I GATC 1 cut(s) 311
BspACI CCGC 5 cut(s) 126, 133, 155, 248, 268
BspANI GGCC 2 cut(s) 41, 164
BspFNI CGCG 1 cut(s) 91
BspLI GGNNCC 1 cut(s) 272
BspPI GGATC 1 cut(s) 319
BspQI GCTCTTC 1 cut(s) 176
BspT104I TTCGAA 1 cut(s) 149
BspTNI GGTCTC 1 cut(s) 163
BsrFI RCCGGY 1 cut(s) 93
BssAI RCCGGY 1 cut(s) 93
BssECI CCNNGG 2 cut(s) 36, 273
BssMI GATC 1 cut(s) 311
Bst2UI CCWGG 4 cut(s) 15, 38, 239, 275
Bst6I CTCTTC 1 cut(s) 176
BstBI TTCGAA 1 cut(s) 149
BstFNI CGCG 1 cut(s) 91
BstHHI GCGC 1 cut(s) 93
BstKTI GATC 1 cut(s) 314
BstMAI GTCTC 3 cut(s) 163, 167, 286
BstMBI GATC 1 cut(s) 311
BstMCI CGRYCG 1 cut(s) 133
BstMWI GCNNNNNNNGC 4 cut(s) 38, 132, 161, 175
BstNI CCWGG 4 cut(s) 15, 38, 239, 275
BstPAI GACNNNNGTC 3 cut(s) 85, 203, 275
BstSCI CCNGG 4 cut(s) 13, 36, 237, 273
BstUI CGCG 1 cut(s) 91
BstV1I GCAGC 2 cut(s) 252, 322
BstV2I GAAGAC 1 cut(s) 85
BstX2I RGATCY 1 cut(s) 311
BstYI RGATCY 1 cut(s) 311
BsuRI GGCC 2 cut(s) 41, 164
BtrI CACGTC 1 cut(s) 205
CfoI GCGC 1 cut(s) 93
Cfr10I RCCGGY 1 cut(s) 93
Cfr13I GGNCC 1 cut(s) 270
CseI GACGC 1 cut(s) 184
CviJI RGCY 8 cut(s) 6, 32, 41, 104, 164, 169, 186, 224
CviKI_1 RGCY 8 cut(s) 6, 32, 41, 104, 164, 169, 186, 224
DpnI GATC 1 cut(s) 313
DpnII GATC 1 cut(s) 311
EaeI YGGCCR 2 cut(s) 39, 162
Eam1104I CTCTTC 1 cut(s) 176
EarI CTCTTC 1 cut(s) 176
EciI GGCGGA 1 cut(s) 263
Ecl136II GAGCTC 2 cut(s) 6, 104
Eco24I GRGCYC 2 cut(s) 8, 106
Eco31I GGTCTC 1 cut(s) 163
Eco47I GGWCC 1 cut(s) 270
Eco53kI GAGCTC 2 cut(s) 6, 104
Eco57I CTGAAG 1 cut(s) 200
Eco88I CYCGRG 1 cut(s) 70
EcoICRI GAGCTC 2 cut(s) 6, 104
EcoRII CCWGG 4 cut(s) 13, 36, 237, 273
EcoT38I GRGCYC 2 cut(s) 8, 106
Esp3I CGTCTC 1 cut(s) 167
FaiI YATR 3 cut(s) 86, 309, 346
Fnu4HI GCNGC 3 cut(s) 127, 266, 336
FriOI GRGCYC 2 cut(s) 8, 106
Fsp4HI GCNGC 3 cut(s) 127, 266, 336
FspBI CTAG 1 cut(s) 315
GlaI GCGC 1 cut(s) 92
GluI GCNGC 3 cut(s) 127, 266, 336
GsuI CTGGAG 1 cut(s) 191
HaeIII GGCC 2 cut(s) 41, 164
HapII CCGG 3 cut(s) 42, 94, 107
HgaI GACGC 1 cut(s) 184
HhaI GCGC 1 cut(s) 93
Hin6I GCGC 1 cut(s) 91
HinP1I GCGC 1 cut(s) 91
HinfI GANTC 2 cut(s) 117, 294
HpaII CCGG 3 cut(s) 42, 94, 107
Hpy188I TCNGA 2 cut(s) 198, 209
Hpy188III TCNNGA 2 cut(s) 72, 280
Hpy99I CGWCG 3 cut(s) 209, 230, 302
HpyAV CCTTC 2 cut(s) 145, 316
HpyCH4IV ACGT 1 cut(s) 204
HpyCH4V TGCA 1 cut(s) 289
HpyF10VI GCNNNNNNNGC 4 cut(s) 38, 132, 161, 175
HpySE526I ACGT 1 cut(s) 204
HspAI GCGC 1 cut(s) 91
Kzo9I GATC 1 cut(s) 311
LguI GCTCTTC 1 cut(s) 176
LmnI GCTCC 2 cut(s) 16, 109
Lsp1109I GCAGC 2 cut(s) 252, 322
MaeI CTAG 1 cut(s) 315
MaeII ACGT 1 cut(s) 204
MalI GATC 1 cut(s) 313
MboI GATC 1 cut(s) 311
MflI RGATCY 1 cut(s) 311
MhlI GDGCHC 2 cut(s) 8, 106
MluCI AATT 2 cut(s) 19, 230
MlyI GAGTC 1 cut(s) 288
MmeI TCCRAC 2 cut(s) 187, 221
MnlI CCTC 3 cut(s) 35, 79, 197
MseI TTAA 1 cut(s) 192
MspA1I CMGCKG 1 cut(s) 126
MspI CCGG 3 cut(s) 42, 94, 107
MspR9I CCNGG 4 cut(s) 15, 38, 239, 275
MvaI CCWGG 4 cut(s) 15, 38, 239, 275
MvnI CGCG 1 cut(s) 91
MwoI GCNNNNNNNGC 4 cut(s) 38, 132, 161, 175
NdeII GATC 1 cut(s) 311
NlaIV GGNNCC 1 cut(s) 272
NmeAIII GCCGAG 1 cut(s) 140
NspV TTCGAA 1 cut(s) 149
PaeR7I CTCGAG 1 cut(s) 70
PciSI GCTCTTC 1 cut(s) 176
PfeI GAWTC 1 cut(s) 117
PfoI TCCNGGA 2 cut(s) 13, 237
PkrI GCNGC 3 cut(s) 128, 267, 337
PleI GAGTC 1 cut(s) 288
PpsI GAGTC 1 cut(s) 288
PshAI GACNNNNGTC 3 cut(s) 85, 203, 275
Psp124BI GAGCTC 2 cut(s) 8, 106
Psp6I CCWGG 4 cut(s) 13, 36, 237, 273
PspGI CCWGG 4 cut(s) 13, 36, 237, 273
PspN4I GGNNCC 1 cut(s) 272
PspPI GGNCC 1 cut(s) 270
PsuI RGATCY 1 cut(s) 311
SacI GAGCTC 2 cut(s) 8, 106
SapI GCTCTTC 1 cut(s) 176
SaqAI TTAA 1 cut(s) 192
SatI GCNGC 3 cut(s) 127, 266, 336
Sau3AI GATC 1 cut(s) 311
Sau96I GGNCC 1 cut(s) 270
SchI GAGTC 1 cut(s) 288
ScrFI CCNGG 4 cut(s) 15, 38, 239, 275
SduI GDGCHC 2 cut(s) 8, 106
SetI ASST 7 cut(s) 8, 27, 71, 106, 171, 207, 279
Sfr274I CTCGAG 1 cut(s) 70
SfuI TTCGAA 1 cut(s) 149
SgrAI CRCCGGYG 1 cut(s) 93
SinI GGWCC 1 cut(s) 270
SlaI CTCGAG 1 cut(s) 70
SmlI CTYRAG 1 cut(s) 70
SmoI CTYRAG 1 cut(s) 70
Sse9I AATT 2 cut(s) 19, 230
SsiI CCGC 5 cut(s) 126, 133, 155, 248, 268
SspMI CTAG 1 cut(s) 315
SstI GAGCTC 2 cut(s) 8, 106
StyD4I CCNGG 4 cut(s) 13, 36, 237, 273
TaiI ACGT 1 cut(s) 207
TaqI TCGA 4 cut(s) 71, 100, 149, 300
TasI AATT 2 cut(s) 19, 230
TauI GCSGC 1 cut(s) 129
TfiI GAWTC 1 cut(s) 117
Tru1I TTAA 1 cut(s) 192
Tru9I TTAA 1 cut(s) 192
TseI GCWGC 2 cut(s) 265, 335
VpaK11BI GGWCC 1 cut(s) 270
XhoI CTCGAG 1 cut(s) 70
XspI CTAG 1 cut(s) 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.