Rh2BG597700

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0013029
Physical Location & Seq
Reverse (-)
81952584 .. 81953288
705 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG597700.1

Sequence Viewer

Length: 366 bp
ATGAGCTCAACTCCTGGAAACCTCAAGGCAACTCTCGCAGGAAGAAGAAGAAGAAGAAGAAGTCTCAGGCCGACGCGTGGCTGTAGCCCTAGAGCTCGAAGAAGCTTTAACAATGGTGGAGAAGGAGGAGGACGCAAAGCGTTGAAGTGTTCCAAGGTGGTCTCAGCCAAATTGGAAACCCTGAAAAACCTCATTCCAAACGGGAAGAGTAGTAGTGCTAGTGCGGTACAGGCGGACAAGTTGTTCCAAGACACAGCGGATTATATCGTTCTGCTGCGAACCCAGGTGGTGATTTTGCAGAAACTCATTGAGGTTGGATCTAGTAGTATTGAAAAAGAAGATAATACTAATGCTGCTGTATTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

121

Amino Acids

13.04

Weight (kDa)

10.96

Isoelectric Point (pI)

64.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013029)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G29370 AT5G39240
fragaria_vesca FvH4_6g47010
malus_domestica MD09G1064600.v1.1 MD17G1057900.v1.1
prunus_persica Prupe.3G256400_v2.0.a1
pyrus_communis pycom111g05430 pycom17g05800
rosa_chinensis RchiOBHm_Chr2g0166071
rosa_laevigata RLG00000021582
rosa_multiflora Rmu_sc0006218.1_g000023
rosa_roxburghii Rroxscaffold_2G00085230
rosa_rugosa Rorug02G0520100.1
rosa_samantha Rh2AG585900 Rh2BG597700 Rh2CG568300 Rh2DG607700
rosa_wichuraiana Rw2G048850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 76
AciI CCGC 3 cut(s) 224, 233, 257
AclWI GGATC 1 cut(s) 325
AfaI GTAC 1 cut(s) 228
AfiI CCNNNNNNNGG 1 cut(s) 77
AflIII ACRYGT 1 cut(s) 74
AgsI TTSAA 2 cut(s) 145, 332
AjnI CCWGG 2 cut(s) 13, 282
AloI GAACNNNNNNTCC 2 cut(s) 227, 259
AluBI AGCT 3 cut(s) 6, 95, 105
AluI AGCT 3 cut(s) 6, 95, 105
Alw21I GWGCWC 2 cut(s) 8, 97
Alw26I GTCTC 2 cut(s) 68, 166
AlwI GGATC 1 cut(s) 325
AoxI GGCC 1 cut(s) 68
ApeKI GCWGC 2 cut(s) 274, 353
AsuHPI GGTGA 1 cut(s) 301
BanII GRGCYC 2 cut(s) 8, 97
Bbv12I GWGCWC 2 cut(s) 8, 97
BbvI GCAGC 2 cut(s) 261, 340
BciT130I CCWGG 2 cut(s) 15, 284
BcoDI GTCTC 2 cut(s) 68, 166
BfaI CTAG 3 cut(s) 90, 219, 321
BfmI CTRYAG 1 cut(s) 82
BisI GCNGC 2 cut(s) 275, 354
BlsI GCNGC 2 cut(s) 276, 355
Bme1390I CCNGG 2 cut(s) 15, 284
BmrFI CCNGG 2 cut(s) 15, 284
BplI GAGNNNNNCTC 1 cut(s) 27
BpuEI CTTGAG 1 cut(s) 8
BsaI GGTCTC 1 cut(s) 166
BsaJI CCNNGG 2 cut(s) 153, 282
Bsc4I CCNNNNNNNGG 1 cut(s) 77
BseBI CCWGG 2 cut(s) 15, 284
BseDI CCNNGG 2 cut(s) 153, 282
BseLI CCNNNNNNNGG 1 cut(s) 77
BseMII CTCAG 2 cut(s) 79, 177
BseRI GAGGAG 1 cut(s) 141
BseXI GCAGC 2 cut(s) 261, 340
Bsh1236I CGCG 1 cut(s) 76
BshFI GGCC 1 cut(s) 70
BsiHKAI GWGCWC 2 cut(s) 8, 97
BslI CCNNNNNNNGG 1 cut(s) 77
BsmAI GTCTC 2 cut(s) 68, 166
BsnI GGCC 1 cut(s) 70
Bso31I GGTCTC 1 cut(s) 166
Bsp1286I GDGCHC 2 cut(s) 8, 97
Bsp143I GATC 1 cut(s) 317
BspACI CCGC 3 cut(s) 224, 233, 257
BspANI GGCC 1 cut(s) 70
BspCNI CTCAG 2 cut(s) 78, 176
BspFNI CGCG 1 cut(s) 76
BspPI GGATC 1 cut(s) 325
BspTNI GGTCTC 1 cut(s) 166
BssECI CCNNGG 2 cut(s) 153, 282
BssMI GATC 1 cut(s) 317
BssT1I CCWWGG 1 cut(s) 153
Bst2UI CCWGG 2 cut(s) 15, 284
Bst6I CTCTTC 1 cut(s) 200
BstDEI CTNAG 2 cut(s) 65, 163
BstFNI CGCG 1 cut(s) 76
BstKTI GATC 1 cut(s) 320
BstMAI GTCTC 2 cut(s) 68, 166
BstMBI GATC 1 cut(s) 317
BstMWI GCNNNNNNNGC 2 cut(s) 35, 230
BstNI CCWGG 2 cut(s) 15, 284
BstSCI CCNGG 2 cut(s) 13, 282
BstSFI CTRYAG 1 cut(s) 82
BstUI CGCG 1 cut(s) 76
BstV1I GCAGC 2 cut(s) 261, 340
BstX2I RGATCY 1 cut(s) 317
BstYI RGATCY 1 cut(s) 317
BsuRI GGCC 1 cut(s) 70
CseI GACGC 2 cut(s) 82, 141
Csp6I GTAC 1 cut(s) 227
CviJI RGCY 7 cut(s) 6, 70, 81, 87, 95, 105, 167
CviKI_1 RGCY 7 cut(s) 6, 70, 81, 87, 95, 105, 167
CviQI GTAC 1 cut(s) 227
DdeI CTNAG 2 cut(s) 65, 163
DpnI GATC 1 cut(s) 319
DpnII GATC 1 cut(s) 317
Eam1104I CTCTTC 1 cut(s) 200
EarI CTCTTC 1 cut(s) 200
EciI GGCGGA 1 cut(s) 248
Ecl136II GAGCTC 2 cut(s) 6, 95
Eco130I CCWWGG 1 cut(s) 153
Eco24I GRGCYC 2 cut(s) 8, 97
Eco31I GGTCTC 1 cut(s) 166
Eco53kI GAGCTC 2 cut(s) 6, 95
EcoICRI GAGCTC 2 cut(s) 6, 95
EcoRII CCWGG 2 cut(s) 13, 282
EcoT14I CCWWGG 1 cut(s) 153
EcoT38I GRGCYC 2 cut(s) 8, 97
ErhI CCWWGG 1 cut(s) 153
FaiI YATR 2 cut(s) 264, 364
Fnu4HI GCNGC 2 cut(s) 275, 354
FriOI GRGCYC 2 cut(s) 8, 97
Fsp4HI GCNGC 2 cut(s) 275, 354
FspBI CTAG 3 cut(s) 90, 219, 321
GluI GCNGC 2 cut(s) 275, 354
HaeIII GGCC 1 cut(s) 70
HgaI GACGC 2 cut(s) 82, 141
HindIII AAGCTT 1 cut(s) 103
HphI GGTGA 1 cut(s) 301
Hpy99I CGWCG 1 cut(s) 76
HpyAV CCTTC 1 cut(s) 116
HpyCH4V TGCA 1 cut(s) 298
HpyF10VI GCNNNNNNNGC 2 cut(s) 35, 230
HpyF3I CTNAG 2 cut(s) 65, 163
Kzo9I GATC 1 cut(s) 317
LpnPI CCDG 7 cut(s) 24, 27, 52, 194, 215, 269, 296
Lsp1109I GCAGC 2 cut(s) 261, 340
MaeI CTAG 3 cut(s) 90, 219, 321
MalI GATC 1 cut(s) 319
MboI GATC 1 cut(s) 317
MboII GAAGA 9 cut(s) 54, 57, 60, 63, 66, 69, 111, 217, 350
MflI RGATCY 1 cut(s) 317
MhlI GDGCHC 2 cut(s) 8, 97
MluCI AATT 1 cut(s) 170
MluI ACGCGT 1 cut(s) 74
MmeI TCCRAC 1 cut(s) 295
MnlI CCTC 5 cut(s) 32, 119, 122, 200, 304
MseI TTAA 1 cut(s) 108
MspA1I CMGCKG 1 cut(s) 257
MspR9I CCNGG 2 cut(s) 15, 284
MvaI CCWGG 2 cut(s) 15, 284
MvnI CGCG 1 cut(s) 76
MwoI GCNNNNNNNGC 2 cut(s) 35, 230
NdeII GATC 1 cut(s) 317
PfoI TCCNGGA 1 cut(s) 13
PkrI GCNGC 2 cut(s) 276, 355
Psp124BI GAGCTC 2 cut(s) 8, 97
Psp6I CCWGG 2 cut(s) 13, 282
PspGI CCWGG 2 cut(s) 13, 282
PsuI RGATCY 1 cut(s) 317
RsaI GTAC 1 cut(s) 228
RsaNI GTAC 1 cut(s) 227
SacI GAGCTC 2 cut(s) 8, 97
SaqAI TTAA 1 cut(s) 108
SatI GCNGC 2 cut(s) 275, 354
Sau3AI GATC 1 cut(s) 317
ScrFI CCNGG 2 cut(s) 15, 284
SduI GDGCHC 2 cut(s) 8, 97
SetI ASST 8 cut(s) 8, 24, 97, 107, 159, 192, 288, 315
SfcI CTRYAG 1 cut(s) 82
SmlI CTYRAG 1 cut(s) 23
SmoI CTYRAG 1 cut(s) 23
Sse9I AATT 1 cut(s) 170
SsiI CCGC 3 cut(s) 224, 233, 257
SspMI CTAG 3 cut(s) 90, 219, 321
SstI GAGCTC 2 cut(s) 8, 97
StyD4I CCNGG 2 cut(s) 13, 282
StyI CCWWGG 1 cut(s) 153
TaqI TCGA 1 cut(s) 97
TasI AATT 1 cut(s) 170
Tru1I TTAA 1 cut(s) 108
Tru9I TTAA 1 cut(s) 108
TseI GCWGC 2 cut(s) 274, 353
XspI CTAG 3 cut(s) 90, 219, 321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.