Rw2G048850

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0013029
Physical Location & Seq
Reverse (-)
76385354 .. 76385716
363 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G048850.1

Sequence Viewer

Length: 363 bp
ATGAGCTCAACTCCTGGAAACCTCAAGGCAACTCTCGCAGGAAGAAGAAGAAGAAGAAGTCTCAGGCCGACGCGTGGCTGTAGCCCTAGAGCTCGAAGAAGCTTTAACAATGGTGGAGAAGGAGGAGGACGCAAAGCGTTGAAGTGTTCCAAGGTGGTCTCAGCCAAATTGGAAACCCTGAAAAACCTCATTCCAAACGGGAAGAGTAGTAGTGCTAGTGCGGTGCAGGCGGACAAGTTGTTCCAAGACACAGCGGATTATATCGTTCTGCTGCGAACCCAGGTGGTGATTTTGCAGAAACTCATTGAGGTTGGATCTAGTAGTATTGAAAAAGAAGATAATACTAATGCTGCTGTATTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

120

Amino Acids

12.88

Weight (kDa)

10.76

Isoelectric Point (pI)

60.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013029)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G29370 AT5G39240
fragaria_vesca FvH4_6g47010
malus_domestica MD09G1064600.v1.1 MD17G1057900.v1.1
prunus_persica Prupe.3G256400_v2.0.a1
pyrus_communis pycom111g05430 pycom17g05800
rosa_chinensis RchiOBHm_Chr2g0166071
rosa_laevigata RLG00000021582
rosa_multiflora Rmu_sc0006218.1_g000023
rosa_roxburghii Rroxscaffold_2G00085230
rosa_rugosa Rorug02G0520100.1
rosa_samantha Rh2AG585900 Rh2BG597700 Rh2CG568300 Rh2DG607700
rosa_wichuraiana Rw2G048850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 73
AciI CCGC 3 cut(s) 221, 230, 254
AclWI GGATC 1 cut(s) 322
AfiI CCNNNNNNNGG 1 cut(s) 74
AflIII ACRYGT 1 cut(s) 71
AgsI TTSAA 2 cut(s) 142, 329
AjnI CCWGG 2 cut(s) 13, 279
AloI GAACNNNNNNTCC 2 cut(s) 224, 256
AluBI AGCT 3 cut(s) 6, 92, 102
AluI AGCT 3 cut(s) 6, 92, 102
Alw21I GWGCWC 2 cut(s) 8, 94
Alw26I GTCTC 2 cut(s) 65, 163
AlwI GGATC 1 cut(s) 322
AoxI GGCC 1 cut(s) 65
ApeKI GCWGC 2 cut(s) 271, 350
AsuHPI GGTGA 1 cut(s) 298
BanII GRGCYC 2 cut(s) 8, 94
Bbv12I GWGCWC 2 cut(s) 8, 94
BbvI GCAGC 2 cut(s) 258, 337
BciT130I CCWGG 2 cut(s) 15, 281
BcoDI GTCTC 2 cut(s) 65, 163
BfaI CTAG 3 cut(s) 87, 216, 318
BfmI CTRYAG 1 cut(s) 79
BisI GCNGC 2 cut(s) 272, 351
BlsI GCNGC 2 cut(s) 273, 352
Bme1390I CCNGG 2 cut(s) 15, 281
BmrFI CCNGG 2 cut(s) 15, 281
BplI GAGNNNNNCTC 1 cut(s) 27
BpuEI CTTGAG 1 cut(s) 8
BsaI GGTCTC 1 cut(s) 163
BsaJI CCNNGG 2 cut(s) 150, 279
Bsc4I CCNNNNNNNGG 1 cut(s) 74
BseBI CCWGG 2 cut(s) 15, 281
BseDI CCNNGG 2 cut(s) 150, 279
BseLI CCNNNNNNNGG 1 cut(s) 74
BseMII CTCAG 2 cut(s) 76, 174
BseRI GAGGAG 1 cut(s) 138
BseXI GCAGC 2 cut(s) 258, 337
BsgI GTGCAG 1 cut(s) 245
Bsh1236I CGCG 1 cut(s) 73
BshFI GGCC 1 cut(s) 67
BsiHKAI GWGCWC 2 cut(s) 8, 94
BslI CCNNNNNNNGG 1 cut(s) 74
BsmAI GTCTC 2 cut(s) 65, 163
BsnI GGCC 1 cut(s) 67
Bso31I GGTCTC 1 cut(s) 163
Bsp1286I GDGCHC 2 cut(s) 8, 94
Bsp143I GATC 1 cut(s) 314
BspACI CCGC 3 cut(s) 221, 230, 254
BspANI GGCC 1 cut(s) 67
BspCNI CTCAG 2 cut(s) 75, 173
BspFNI CGCG 1 cut(s) 73
BspPI GGATC 1 cut(s) 322
BspTNI GGTCTC 1 cut(s) 163
BssECI CCNNGG 2 cut(s) 150, 279
BssMI GATC 1 cut(s) 314
BssT1I CCWWGG 1 cut(s) 150
Bst2UI CCWGG 2 cut(s) 15, 281
Bst6I CTCTTC 1 cut(s) 197
BstC8I GCNNGC 1 cut(s) 228
BstDEI CTNAG 2 cut(s) 62, 160
BstFNI CGCG 1 cut(s) 73
BstKTI GATC 1 cut(s) 317
BstMAI GTCTC 2 cut(s) 65, 163
BstMBI GATC 1 cut(s) 314
BstMWI GCNNNNNNNGC 2 cut(s) 35, 227
BstNI CCWGG 2 cut(s) 15, 281
BstSCI CCNGG 2 cut(s) 13, 279
BstSFI CTRYAG 1 cut(s) 79
BstUI CGCG 1 cut(s) 73
BstV1I GCAGC 2 cut(s) 258, 337
BstX2I RGATCY 1 cut(s) 314
BstYI RGATCY 1 cut(s) 314
BsuRI GGCC 1 cut(s) 67
Cac8I GCNNGC 1 cut(s) 228
CseI GACGC 2 cut(s) 79, 138
CviJI RGCY 7 cut(s) 6, 67, 78, 84, 92, 102, 164
CviKI_1 RGCY 7 cut(s) 6, 67, 78, 84, 92, 102, 164
DdeI CTNAG 2 cut(s) 62, 160
DpnI GATC 1 cut(s) 316
DpnII GATC 1 cut(s) 314
Eam1104I CTCTTC 1 cut(s) 197
EarI CTCTTC 1 cut(s) 197
EciI GGCGGA 1 cut(s) 245
Ecl136II GAGCTC 2 cut(s) 6, 92
Eco130I CCWWGG 1 cut(s) 150
Eco24I GRGCYC 2 cut(s) 8, 94
Eco31I GGTCTC 1 cut(s) 163
Eco53kI GAGCTC 2 cut(s) 6, 92
EcoICRI GAGCTC 2 cut(s) 6, 92
EcoRII CCWGG 2 cut(s) 13, 279
EcoT14I CCWWGG 1 cut(s) 150
EcoT38I GRGCYC 2 cut(s) 8, 94
ErhI CCWWGG 1 cut(s) 150
FaiI YATR 2 cut(s) 261, 361
Fnu4HI GCNGC 2 cut(s) 272, 351
FriOI GRGCYC 2 cut(s) 8, 94
Fsp4HI GCNGC 2 cut(s) 272, 351
FspBI CTAG 3 cut(s) 87, 216, 318
GluI GCNGC 2 cut(s) 272, 351
HaeIII GGCC 1 cut(s) 67
HgaI GACGC 2 cut(s) 79, 138
HindIII AAGCTT 1 cut(s) 100
HphI GGTGA 1 cut(s) 298
Hpy99I CGWCG 1 cut(s) 73
HpyAV CCTTC 1 cut(s) 113
HpyCH4V TGCA 2 cut(s) 226, 295
HpyF10VI GCNNNNNNNGC 2 cut(s) 35, 227
HpyF3I CTNAG 2 cut(s) 62, 160
Kzo9I GATC 1 cut(s) 314
LpnPI CCDG 7 cut(s) 24, 27, 49, 191, 212, 266, 293
Lsp1109I GCAGC 2 cut(s) 258, 337
MaeI CTAG 3 cut(s) 87, 216, 318
MalI GATC 1 cut(s) 316
MboI GATC 1 cut(s) 314
MboII GAAGA 8 cut(s) 54, 57, 60, 63, 66, 108, 214, 347
MflI RGATCY 1 cut(s) 314
MhlI GDGCHC 2 cut(s) 8, 94
MluCI AATT 1 cut(s) 167
MluI ACGCGT 1 cut(s) 71
MmeI TCCRAC 1 cut(s) 292
MnlI CCTC 5 cut(s) 32, 116, 119, 197, 301
MseI TTAA 1 cut(s) 105
MspA1I CMGCKG 1 cut(s) 254
MspR9I CCNGG 2 cut(s) 15, 281
MvaI CCWGG 2 cut(s) 15, 281
MvnI CGCG 1 cut(s) 73
MwoI GCNNNNNNNGC 2 cut(s) 35, 227
NdeII GATC 1 cut(s) 314
PfoI TCCNGGA 1 cut(s) 13
PkrI GCNGC 2 cut(s) 273, 352
Psp124BI GAGCTC 2 cut(s) 8, 94
Psp6I CCWGG 2 cut(s) 13, 279
PspGI CCWGG 2 cut(s) 13, 279
PsuI RGATCY 1 cut(s) 314
SacI GAGCTC 2 cut(s) 8, 94
SaqAI TTAA 1 cut(s) 105
SatI GCNGC 2 cut(s) 272, 351
Sau3AI GATC 1 cut(s) 314
ScrFI CCNGG 2 cut(s) 15, 281
SduI GDGCHC 2 cut(s) 8, 94
SetI ASST 8 cut(s) 8, 24, 94, 104, 156, 189, 285, 312
SfcI CTRYAG 1 cut(s) 79
SmlI CTYRAG 1 cut(s) 23
SmoI CTYRAG 1 cut(s) 23
Sse9I AATT 1 cut(s) 167
SsiI CCGC 3 cut(s) 221, 230, 254
SspMI CTAG 3 cut(s) 87, 216, 318
SstI GAGCTC 2 cut(s) 8, 94
StyD4I CCNGG 2 cut(s) 13, 279
StyI CCWWGG 1 cut(s) 150
TaqI TCGA 1 cut(s) 94
TasI AATT 1 cut(s) 167
Tru1I TTAA 1 cut(s) 105
Tru9I TTAA 1 cut(s) 105
TseI GCWGC 2 cut(s) 271, 350
XspI CTAG 3 cut(s) 87, 216, 318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.