pycom17g05800

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0013029
Physical Location & Seq
Forward (+)
4094486 .. 4094990
505 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g05800.2

Sequence Viewer

Length: 438 bp
ATGGCTAAACGACAAAGGAAAAAAAAACCAGAAATGGCCTCTTCTTCCTCCTCACATTCTCTCTGCGACTCTGTTTTTCCATCATACAAAAACACAATGAGCTCGGCTCCTGGAAATTACCTCAAAGCCACCCTTGCCGGAAGAAGAAGAAGAACCACTTCGAGAAGAAGACTTGTGTCGCGTAGGGGTCGAGCTCCGGTAAGAAAATTCAACAACGGCGGCCGCAAACGGAGGTGTTTGAAGGCCGTCTCCGCCAAGCTGGAGACCCTGAAGAGCCTCGTTAATCCGACCCACGTCGGGAAAACGCTAAAAGCCGACGAATTGTTCCAGGAAACGGCGGATTACATCGTCCTGCTGCGGACCCAGGTCGTGATTTTGCAGAGACTCGTCGAGTTTTATGGATCTAGTGAGAAGGAAAATGCTGCTGCTGCATTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

146

Amino Acids

16.28

Weight (kDa)

11.15

Isoelectric Point (pI)

70.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013029)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G29370 AT5G39240
fragaria_vesca FvH4_6g47010
malus_domestica MD09G1064600.v1.1 MD17G1057900.v1.1
prunus_persica Prupe.3G256400_v2.0.a1
pyrus_communis pycom111g05430 pycom17g05800
rosa_chinensis RchiOBHm_Chr2g0166071
rosa_laevigata RLG00000021582
rosa_multiflora Rmu_sc0006218.1_g000023
rosa_roxburghii Rroxscaffold_2G00085230
rosa_rugosa Rorug02G0520100.1
rosa_samantha Rh2AG585900 Rh2BG597700 Rh2CG568300 Rh2DG607700
rosa_wichuraiana Rw2G048850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 181
AciI CCGC 5 cut(s) 219, 223, 252, 338, 358
AclWI GGATC 1 cut(s) 409
AcoI YGGCCR 1 cut(s) 220
AcsI RAATTY 1 cut(s) 206
AcuI CTGAAG 1 cut(s) 290
AfiI CCNNNNNNNGG 2 cut(s) 297, 334
AgsI TTSAA 2 cut(s) 211, 241
AjiI CACGTC 1 cut(s) 295
AjnI CCWGG 3 cut(s) 109, 327, 363
AluBI AGCT 3 cut(s) 102, 194, 259
AluI AGCT 3 cut(s) 102, 194, 259
Alw21I GWGCWC 2 cut(s) 104, 196
Alw26I GTCTC 3 cut(s) 253, 257, 376
AlwI GGATC 1 cut(s) 409
AoxI GGCC 3 cut(s) 36, 220, 243
ApeKI GCWGC 4 cut(s) 355, 422, 425, 428
ApoI RAATTY 1 cut(s) 206
Asp700I GAANNNNTTC 1 cut(s) 157
AspS9I GGNCC 1 cut(s) 360
AvaII GGWCC 1 cut(s) 360
BanII GRGCYC 2 cut(s) 104, 196
BbsI GAAGAC 1 cut(s) 175
Bbv12I GWGCWC 2 cut(s) 104, 196
BbvI GCAGC 4 cut(s) 342, 409, 412, 415
BccI CCATC 1 cut(s) 88
BceAI ACGGC 3 cut(s) 230, 232, 351
BciT130I CCWGG 3 cut(s) 111, 329, 365
BcoDI GTCTC 3 cut(s) 253, 257, 376
BfaI CTAG 1 cut(s) 405
BisI GCNGC 6 cut(s) 220, 223, 356, 423, 426, 429
BlsI GCNGC 6 cut(s) 221, 224, 357, 424, 427, 430
Bme1390I CCNGG 3 cut(s) 111, 329, 365
Bme18I GGWCC 1 cut(s) 360
BmgBI CACGTC 1 cut(s) 295
BmgT120I GGNCC 1 cut(s) 360
BmiI GGNNCC 2 cut(s) 108, 362
BmrFI CCNGG 3 cut(s) 111, 329, 365
BoxI GACNNNNGTC 3 cut(s) 175, 293, 365
BpiI GAAGAC 1 cut(s) 175
BplI GAGNNNNNCTC 2 cut(s) 91, 123
BpmI CTGGAG 1 cut(s) 281
BsaI GGTCTC 1 cut(s) 257
BsaJI CCNNGG 1 cut(s) 363
BsaWI WCCGGW 1 cut(s) 196
Bsc4I CCNNNNNNNGG 2 cut(s) 297, 334
BseBI CCWGG 3 cut(s) 111, 329, 365
BseDI CCNNGG 1 cut(s) 363
BseLI CCNNNNNNNGG 2 cut(s) 297, 334
BseRI GAGGAG 1 cut(s) 40
BseX3I CGGCCG 1 cut(s) 220
BseXI GCAGC 4 cut(s) 342, 409, 412, 415
Bsh1236I CGCG 1 cut(s) 181
Bsh1285I CGRYCG 1 cut(s) 223
BshFI GGCC 3 cut(s) 38, 222, 245
BsiEI CGRYCG 1 cut(s) 223
BsiHKAI GWGCWC 2 cut(s) 104, 196
BsiSI CCGG 2 cut(s) 138, 197
BslI CCNNNNNNNGG 2 cut(s) 297, 334
BsmAI GTCTC 3 cut(s) 253, 257, 376
BsmBI CGTCTC 1 cut(s) 253
BsnI GGCC 3 cut(s) 38, 222, 245
Bso31I GGTCTC 1 cut(s) 257
Bsp1286I GDGCHC 2 cut(s) 104, 196
Bsp143I GATC 1 cut(s) 401
BspACI CCGC 5 cut(s) 219, 223, 252, 338, 358
BspANI GGCC 3 cut(s) 38, 222, 245
BspFNI CGCG 1 cut(s) 181
BspLI GGNNCC 2 cut(s) 108, 362
BspPI GGATC 1 cut(s) 409
BspQI GCTCTTC 1 cut(s) 266
BspTNI GGTCTC 1 cut(s) 257
BssECI CCNNGG 1 cut(s) 363
BssMI GATC 1 cut(s) 401
Bst2UI CCWGG 3 cut(s) 111, 329, 365
Bst6I CTCTTC 2 cut(s) 46, 266
BstFNI CGCG 1 cut(s) 181
BstKTI GATC 1 cut(s) 404
BstMAI GTCTC 3 cut(s) 253, 257, 376
BstMBI GATC 1 cut(s) 401
BstMCI CGRYCG 1 cut(s) 223
BstMWI GCNNNNNNNGC 3 cut(s) 134, 251, 428
BstNI CCWGG 3 cut(s) 111, 329, 365
BstPAI GACNNNNGTC 3 cut(s) 175, 293, 365
BstSCI CCNGG 3 cut(s) 109, 327, 363
BstUI CGCG 1 cut(s) 181
BstV1I GCAGC 4 cut(s) 342, 409, 412, 415
BstV2I GAAGAC 1 cut(s) 175
BstX2I RGATCY 1 cut(s) 401
BstYI RGATCY 1 cut(s) 401
BstZI CGGCCG 1 cut(s) 220
BsuRI GGCC 3 cut(s) 38, 222, 245
BtrI CACGTC 1 cut(s) 295
CciNI GCGGCCGC 1 cut(s) 220
Cfr13I GGNCC 1 cut(s) 360
DpnI GATC 1 cut(s) 403
DpnII GATC 1 cut(s) 401
EaeI YGGCCR 1 cut(s) 220
EagI CGGCCG 1 cut(s) 220
Eam1104I CTCTTC 2 cut(s) 46, 266
EarI CTCTTC 2 cut(s) 46, 266
EciI GGCGGA 2 cut(s) 241, 353
Ecl136II GAGCTC 2 cut(s) 102, 194
EclXI CGGCCG 1 cut(s) 220
Eco24I GRGCYC 2 cut(s) 104, 196
Eco31I GGTCTC 1 cut(s) 257
Eco47I GGWCC 1 cut(s) 360
Eco52I CGGCCG 1 cut(s) 220
Eco53kI GAGCTC 2 cut(s) 102, 194
Eco57I CTGAAG 1 cut(s) 290
EcoICRI GAGCTC 2 cut(s) 102, 194
EcoRII CCWGG 3 cut(s) 109, 327, 363
EcoT38I GRGCYC 2 cut(s) 104, 196
Esp3I CGTCTC 1 cut(s) 253
FaiI YATR 3 cut(s) 85, 399, 436
FalI AAGNNNNNCTT 4 cut(s) 117, 149, 142, 174
Fnu4HI GCNGC 6 cut(s) 220, 223, 356, 423, 426, 429
FriOI GRGCYC 2 cut(s) 104, 196
Fsp4HI GCNGC 6 cut(s) 220, 223, 356, 423, 426, 429
FspBI CTAG 1 cut(s) 405
GluI GCNGC 6 cut(s) 220, 223, 356, 423, 426, 429
GsuI CTGGAG 1 cut(s) 281
HaeIII GGCC 3 cut(s) 38, 222, 245
HapII CCGG 2 cut(s) 138, 197
HinfI GANTC 2 cut(s) 68, 384
HpaII CCGG 2 cut(s) 138, 197
Hpy188I TCNGA 1 cut(s) 288
Hpy188III TCNNGA 3 cut(s) 162, 298, 370
Hpy99I CGWCG 3 cut(s) 299, 320, 392
HpyAV CCTTC 2 cut(s) 235, 406
HpyCH4IV ACGT 1 cut(s) 294
HpyCH4V TGCA 2 cut(s) 379, 431
HpyF10VI GCNNNNNNNGC 3 cut(s) 134, 251, 428
HpySE526I ACGT 1 cut(s) 294
Kzo9I GATC 1 cut(s) 401
LguI GCTCTTC 1 cut(s) 266
LmnI GCTCC 2 cut(s) 112, 199
Lsp1109I GCAGC 4 cut(s) 342, 409, 412, 415
MaeI CTAG 1 cut(s) 405
MaeII ACGT 1 cut(s) 294
MalI GATC 1 cut(s) 403
MboI GATC 1 cut(s) 401
MboII GAAGA 9 cut(s) 33, 36, 153, 156, 159, 162, 177, 180, 283
MflI RGATCY 1 cut(s) 401
MhlI GDGCHC 2 cut(s) 104, 196
MluCI AATT 3 cut(s) 115, 206, 320
MlyI GAGTC 2 cut(s) 62, 378
MmeI TCCRAC 1 cut(s) 311
MnlI CCTC 6 cut(s) 49, 58, 61, 131, 225, 287
MroXI GAANNNNTTC 1 cut(s) 157
MseI TTAA 1 cut(s) 282
MspI CCGG 2 cut(s) 138, 197
MspR9I CCNGG 3 cut(s) 111, 329, 365
MvaI CCWGG 3 cut(s) 111, 329, 365
MvnI CGCG 1 cut(s) 181
MwoI GCNNNNNNNGC 3 cut(s) 134, 251, 428
NdeII GATC 1 cut(s) 401
NlaIV GGNNCC 2 cut(s) 108, 362
NmeAIII GCCGAG 1 cut(s) 83
NotI GCGGCCGC 1 cut(s) 220
PciSI GCTCTTC 1 cut(s) 266
PdmI GAANNNNTTC 1 cut(s) 157
PfoI TCCNGGA 2 cut(s) 109, 327
PkrI GCNGC 6 cut(s) 221, 224, 357, 424, 427, 430
PleI GAGTC 2 cut(s) 62, 378
PpsI GAGTC 2 cut(s) 62, 378
PshAI GACNNNNGTC 3 cut(s) 175, 293, 365
Psp124BI GAGCTC 2 cut(s) 104, 196
Psp6I CCWGG 3 cut(s) 109, 327, 363
PspGI CCWGG 3 cut(s) 109, 327, 363
PspN4I GGNNCC 2 cut(s) 108, 362
PspPI GGNCC 1 cut(s) 360
PsuI RGATCY 1 cut(s) 401
SacI GAGCTC 2 cut(s) 104, 196
SapI GCTCTTC 1 cut(s) 266
SaqAI TTAA 1 cut(s) 282
SatI GCNGC 6 cut(s) 220, 223, 356, 423, 426, 429
Sau3AI GATC 1 cut(s) 401
Sau96I GGNCC 1 cut(s) 360
SchI GAGTC 2 cut(s) 62, 378
ScrFI CCNGG 3 cut(s) 111, 329, 365
SduI GDGCHC 2 cut(s) 104, 196
SetI ASST 7 cut(s) 104, 123, 196, 236, 261, 297, 369
SinI GGWCC 1 cut(s) 360
Sse9I AATT 3 cut(s) 115, 206, 320
SsiI CCGC 5 cut(s) 219, 223, 252, 338, 358
SspMI CTAG 1 cut(s) 405
SstI GAGCTC 2 cut(s) 104, 196
StyD4I CCNGG 3 cut(s) 109, 327, 363
TaiI ACGT 1 cut(s) 297
TaqI TCGA 3 cut(s) 161, 190, 390
TasI AATT 3 cut(s) 115, 206, 320
TauI GCSGC 2 cut(s) 222, 225
Tru1I TTAA 1 cut(s) 282
Tru9I TTAA 1 cut(s) 282
TseI GCWGC 4 cut(s) 355, 422, 425, 428
TspGWI ACGGA 1 cut(s) 244
VpaK11BI GGWCC 1 cut(s) 360
XapI RAATTY 1 cut(s) 206
XmnI GAANNNNTTC 1 cut(s) 157
XspI CTAG 1 cut(s) 405
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.