MD09G1064600.v1.1

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0013029
Physical Location & Seq
Forward (+)
4424608 .. 4425365
758 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1064600.v1.1.491

Sequence Viewer

Length: 345 bp
ATGAGCTCTGCTCCTGGAAATTACCTCAAGGCCACCCTGGCCGGAAGAAGAAGAAGAAGAAACACCTCGAGAAGAAGACTTATGCCGCGCCGGTGTCGAGCTCCGGTTAGAAGCTTCAACAGCGGCGACCGCAAACGGCGTTGTTCGAAGGCGGTCTCGGCCAAGCTGGAGACGCTAAAGACCCTCGTTAATCCGACCCACGTCGGAAAATCGCTAAAAGCAGACGAATTGTTCCAGGAAACGGCGGATTACATCGTTCTGCTGCGGACCCAGGTCGTGATTTTGCAGAGACTCGTCGAGTTTTATGGATCTAGTGAGAAGGAAAATGTTGCTGCTGTATCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

115

Amino Acids

12.94

Weight (kDa)

11.25

Isoelectric Point (pI)

76.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013029)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G29370 AT5G39240
fragaria_vesca FvH4_6g47010
malus_domestica MD09G1064600.v1.1 MD17G1057900.v1.1
prunus_persica Prupe.3G256400_v2.0.a1
pyrus_communis pycom111g05430 pycom17g05800
rosa_chinensis RchiOBHm_Chr2g0166071
rosa_laevigata RLG00000021582
rosa_multiflora Rmu_sc0006218.1_g000023
rosa_roxburghii Rroxscaffold_2G00085230
rosa_rugosa Rorug02G0520100.1
rosa_samantha Rh2AG585900 Rh2BG597700 Rh2CG568300 Rh2DG607700
rosa_wichuraiana Rw2G048850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 88
AciI CCGC 6 cut(s) 86, 123, 130, 152, 245, 265
AclWI GGATC 1 cut(s) 316
AcoI YGGCCR 2 cut(s) 39, 159
AfiI CCNNNNNNNGG 1 cut(s) 241
AgsI TTSAA 1 cut(s) 118
AjiI CACGTC 1 cut(s) 202
AjnI CCWGG 4 cut(s) 13, 36, 234, 270
AluBI AGCT 4 cut(s) 6, 101, 114, 166
AluI AGCT 4 cut(s) 6, 101, 114, 166
Alw21I GWGCWC 2 cut(s) 8, 103
Alw26I GTCTC 3 cut(s) 160, 164, 283
AlwI GGATC 1 cut(s) 316
Ama87I CYCGRG 1 cut(s) 67
AoxI GGCC 3 cut(s) 30, 39, 159
ApeKI GCWGC 2 cut(s) 262, 332
AspLEI GCGC 1 cut(s) 90
AspS9I GGNCC 1 cut(s) 267
AsuII TTCGAA 1 cut(s) 146
AvaI CYCGRG 1 cut(s) 67
AvaII GGWCC 1 cut(s) 267
BanII GRGCYC 2 cut(s) 8, 103
BbsI GAAGAC 1 cut(s) 82
Bbv12I GWGCWC 2 cut(s) 8, 103
BbvI GCAGC 2 cut(s) 249, 319
BceAI ACGGC 2 cut(s) 152, 258
BciT130I CCWGG 4 cut(s) 15, 38, 236, 272
BcoDI GTCTC 3 cut(s) 160, 164, 283
BfaI CTAG 1 cut(s) 312
BglI GCCNNNNNGGC 1 cut(s) 38
BisI GCNGC 4 cut(s) 86, 124, 263, 333
BlsI GCNGC 4 cut(s) 87, 125, 264, 334
Bme1390I CCNGG 4 cut(s) 15, 38, 236, 272
Bme18I GGWCC 1 cut(s) 267
BmeT110I CYCGRG 1 cut(s) 67
BmgBI CACGTC 1 cut(s) 202
BmgT120I GGNCC 1 cut(s) 267
BmiI GGNNCC 1 cut(s) 269
BmrFI CCNGG 4 cut(s) 15, 38, 236, 272
BoxI GACNNNNGTC 2 cut(s) 200, 272
BpiI GAAGAC 1 cut(s) 82
BplI GAGNNNNNCTC 1 cut(s) 27
BpmI CTGGAG 1 cut(s) 188
Bpu14I TTCGAA 1 cut(s) 146
BpuEI CTTGAG 1 cut(s) 11
BsaI GGTCTC 1 cut(s) 160
BsaJI CCNNGG 2 cut(s) 36, 270
BsaWI WCCGGW 1 cut(s) 103
Bsc4I CCNNNNNNNGG 1 cut(s) 241
Bse118I RCCGGY 1 cut(s) 90
BseBI CCWGG 4 cut(s) 15, 38, 236, 272
BseDI CCNNGG 2 cut(s) 36, 270
BseLI CCNNNNNNNGG 1 cut(s) 241
BseXI GCAGC 2 cut(s) 249, 319
Bsh1236I CGCG 1 cut(s) 88
Bsh1285I CGRYCG 1 cut(s) 130
BshFI GGCC 3 cut(s) 32, 41, 161
BsiEI CGRYCG 1 cut(s) 130
BsiHKAI GWGCWC 2 cut(s) 8, 103
BsiHKCI CYCGRG 1 cut(s) 67
BsiSI CCGG 3 cut(s) 42, 91, 104
BslI CCNNNNNNNGG 1 cut(s) 241
BsmAI GTCTC 3 cut(s) 160, 164, 283
BsmBI CGTCTC 1 cut(s) 164
BsnI GGCC 3 cut(s) 32, 41, 161
Bso31I GGTCTC 1 cut(s) 160
BsoBI CYCGRG 1 cut(s) 67
Bsp119I TTCGAA 1 cut(s) 146
Bsp1286I GDGCHC 2 cut(s) 8, 103
Bsp143I GATC 1 cut(s) 308
BspACI CCGC 6 cut(s) 86, 123, 130, 152, 245, 265
BspANI GGCC 3 cut(s) 32, 41, 161
BspFNI CGCG 1 cut(s) 88
BspLI GGNNCC 1 cut(s) 269
BspPI GGATC 1 cut(s) 316
BspT104I TTCGAA 1 cut(s) 146
BspTNI GGTCTC 1 cut(s) 160
BsrFI RCCGGY 1 cut(s) 90
BssAI RCCGGY 1 cut(s) 90
BssECI CCNNGG 2 cut(s) 36, 270
BssMI GATC 1 cut(s) 308
Bst2UI CCWGG 4 cut(s) 15, 38, 236, 272
BstBI TTCGAA 1 cut(s) 146
BstFNI CGCG 1 cut(s) 88
BstHHI GCGC 1 cut(s) 90
BstKTI GATC 1 cut(s) 311
BstMAI GTCTC 3 cut(s) 160, 164, 283
BstMBI GATC 1 cut(s) 308
BstMCI CGRYCG 1 cut(s) 130
BstMWI GCNNNNNNNGC 5 cut(s) 38, 120, 129, 158, 172
BstNI CCWGG 4 cut(s) 15, 38, 236, 272
BstPAI GACNNNNGTC 2 cut(s) 200, 272
BstSCI CCNGG 4 cut(s) 13, 36, 234, 270
BstUI CGCG 1 cut(s) 88
BstV1I GCAGC 2 cut(s) 249, 319
BstV2I GAAGAC 1 cut(s) 82
BstX2I RGATCY 1 cut(s) 308
BstYI RGATCY 1 cut(s) 308
BsuRI GGCC 3 cut(s) 32, 41, 161
BtrI CACGTC 1 cut(s) 202
CfoI GCGC 1 cut(s) 90
Cfr10I RCCGGY 1 cut(s) 90
Cfr13I GGNCC 1 cut(s) 267
CseI GACGC 1 cut(s) 181
CviJI RGCY 7 cut(s) 6, 32, 41, 101, 114, 161, 166
CviKI_1 RGCY 7 cut(s) 6, 32, 41, 101, 114, 161, 166
DpnI GATC 1 cut(s) 310
DpnII GATC 1 cut(s) 308
EaeI YGGCCR 2 cut(s) 39, 159
EciI GGCGGA 1 cut(s) 260
Ecl136II GAGCTC 2 cut(s) 6, 101
Eco24I GRGCYC 2 cut(s) 8, 103
Eco31I GGTCTC 1 cut(s) 160
Eco47I GGWCC 1 cut(s) 267
Eco53kI GAGCTC 2 cut(s) 6, 101
Eco88I CYCGRG 1 cut(s) 67
EcoICRI GAGCTC 2 cut(s) 6, 101
EcoRII CCWGG 4 cut(s) 13, 36, 234, 270
EcoT38I GRGCYC 2 cut(s) 8, 103
Esp3I CGTCTC 1 cut(s) 164
FaiI YATR 3 cut(s) 83, 306, 343
Fnu4HI GCNGC 4 cut(s) 86, 124, 263, 333
FriOI GRGCYC 2 cut(s) 8, 103
Fsp4HI GCNGC 4 cut(s) 86, 124, 263, 333
FspBI CTAG 1 cut(s) 312
GlaI GCGC 1 cut(s) 89
GluI GCNGC 4 cut(s) 86, 124, 263, 333
GsuI CTGGAG 1 cut(s) 188
HaeIII GGCC 3 cut(s) 32, 41, 161
HapII CCGG 3 cut(s) 42, 91, 104
HgaI GACGC 1 cut(s) 181
HhaI GCGC 1 cut(s) 90
Hin6I GCGC 1 cut(s) 88
HinP1I GCGC 1 cut(s) 88
HindIII AAGCTT 1 cut(s) 112
HinfI GANTC 1 cut(s) 291
HpaII CCGG 3 cut(s) 42, 91, 104
Hpy188I TCNGA 2 cut(s) 195, 206
Hpy188III TCNNGA 2 cut(s) 69, 277
Hpy99I CGWCG 2 cut(s) 206, 299
HpyAV CCTTC 2 cut(s) 142, 313
HpyCH4IV ACGT 1 cut(s) 201
HpyCH4V TGCA 1 cut(s) 286
HpyF10VI GCNNNNNNNGC 5 cut(s) 38, 120, 129, 158, 172
HpySE526I ACGT 1 cut(s) 201
HspAI GCGC 1 cut(s) 88
Kzo9I GATC 1 cut(s) 308
LmnI GCTCC 2 cut(s) 16, 106
Lsp1109I GCAGC 2 cut(s) 249, 319
MaeI CTAG 1 cut(s) 312
MaeII ACGT 1 cut(s) 201
MalI GATC 1 cut(s) 310
MboI GATC 1 cut(s) 308
MboII GAAGA 7 cut(s) 57, 60, 63, 66, 69, 84, 87
MflI RGATCY 1 cut(s) 308
MhlI GDGCHC 2 cut(s) 8, 103
MluCI AATT 2 cut(s) 19, 227
MlyI GAGTC 1 cut(s) 285
MmeI TCCRAC 2 cut(s) 184, 218
MnlI CCTC 3 cut(s) 35, 76, 194
MseI TTAA 1 cut(s) 189
MspA1I CMGCKG 1 cut(s) 123
MspI CCGG 3 cut(s) 42, 91, 104
MspR9I CCNGG 4 cut(s) 15, 38, 236, 272
MvaI CCWGG 4 cut(s) 15, 38, 236, 272
MvnI CGCG 1 cut(s) 88
MwoI GCNNNNNNNGC 5 cut(s) 38, 120, 129, 158, 172
NdeII GATC 1 cut(s) 308
NlaIV GGNNCC 1 cut(s) 269
NmeAIII GCCGAG 1 cut(s) 137
NspV TTCGAA 1 cut(s) 146
PaeR7I CTCGAG 1 cut(s) 67
PfoI TCCNGGA 2 cut(s) 13, 234
PkrI GCNGC 4 cut(s) 87, 125, 264, 334
PleI GAGTC 1 cut(s) 285
PpsI GAGTC 1 cut(s) 285
PshAI GACNNNNGTC 2 cut(s) 200, 272
Psp124BI GAGCTC 2 cut(s) 8, 103
Psp6I CCWGG 4 cut(s) 13, 36, 234, 270
PspGI CCWGG 4 cut(s) 13, 36, 234, 270
PspN4I GGNNCC 1 cut(s) 269
PspPI GGNCC 1 cut(s) 267
PsuI RGATCY 1 cut(s) 308
SacI GAGCTC 2 cut(s) 8, 103
SaqAI TTAA 1 cut(s) 189
SatI GCNGC 4 cut(s) 86, 124, 263, 333
Sau3AI GATC 1 cut(s) 308
Sau96I GGNCC 1 cut(s) 267
SchI GAGTC 1 cut(s) 285
ScrFI CCNGG 4 cut(s) 15, 38, 236, 272
SduI GDGCHC 2 cut(s) 8, 103
SetI ASST 8 cut(s) 8, 27, 68, 103, 116, 168, 204, 276
SfiI GGCCNNNNNGGCC 1 cut(s) 38
Sfr274I CTCGAG 1 cut(s) 67
SfuI TTCGAA 1 cut(s) 146
SgrAI CRCCGGYG 1 cut(s) 90
SinI GGWCC 1 cut(s) 267
SlaI CTCGAG 1 cut(s) 67
SmlI CTYRAG 2 cut(s) 26, 67
SmoI CTYRAG 2 cut(s) 26, 67
Sse9I AATT 2 cut(s) 19, 227
SsiI CCGC 6 cut(s) 86, 123, 130, 152, 245, 265
SspMI CTAG 1 cut(s) 312
SstI GAGCTC 2 cut(s) 8, 103
StyD4I CCNGG 4 cut(s) 13, 36, 234, 270
TaiI ACGT 1 cut(s) 204
TaqI TCGA 4 cut(s) 68, 97, 146, 297
TasI AATT 2 cut(s) 19, 227
TauI GCSGC 2 cut(s) 88, 126
Tru1I TTAA 1 cut(s) 189
Tru9I TTAA 1 cut(s) 189
TseI GCWGC 2 cut(s) 262, 332
VpaK11BI GGWCC 1 cut(s) 267
XhoI CTCGAG 1 cut(s) 67
XspI CTAG 1 cut(s) 312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.