Rroxscaffold_2G00085230

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0013029
Physical Location & Seq
Forward (+)
7565671 .. 7566039
369 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_2G00085230.1

Sequence Viewer

Length: 369 bp
ATGAGCTCAACTTCTGGAAGCCTCAAGGCAACTCTCGCAGGAAGAAGAAGAAGAAGAAGAAGTCTCAGGCCGACTCGTGGCTGTAGCCCTAGAGCTCGAAGAAGCTTTAACAATAGTGGAGAAGGAGGAGGACGCAAAGCGTTGAAGTGTTCCAAGGTGGTCTCAGCCAAATTGGAAACCCTGAAAAACCTCATTCCAAACGGGAAGAGTAGTAGTGCTAGTGCGGTGCAGGCGGACAAGTTGTTCCAAGACACAGCCGATTATATCGTTCTGTTGCGAACCCAGGTGGTTATTTTGCAGAAACTCATTGAGGTTTATGGATCTAGTAGTATTGAGAAAGAAGATAATACTAATGCTGCTGTATTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

122

Amino Acids

13.2

Weight (kDa)

10.78

Isoelectric Point (pI)

64.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013029)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G29370 AT5G39240
fragaria_vesca FvH4_6g47010
malus_domestica MD09G1064600.v1.1 MD17G1057900.v1.1
prunus_persica Prupe.3G256400_v2.0.a1
pyrus_communis pycom111g05430 pycom17g05800
rosa_chinensis RchiOBHm_Chr2g0166071
rosa_laevigata RLG00000021582
rosa_multiflora Rmu_sc0006218.1_g000023
rosa_roxburghii Rroxscaffold_2G00085230
rosa_rugosa Rorug02G0520100.1
rosa_samantha Rh2AG585900 Rh2BG597700 Rh2CG568300 Rh2DG607700
rosa_wichuraiana Rw2G048850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 224, 233
AclWI GGATC 1 cut(s) 328
AfiI CCNNNNNNNGG 1 cut(s) 77
AgsI TTSAA 1 cut(s) 145
AjnI CCWGG 1 cut(s) 282
AloI GAACNNNNNNTCC 2 cut(s) 227, 259
AluBI AGCT 3 cut(s) 6, 95, 105
AluI AGCT 3 cut(s) 6, 95, 105
Alw21I GWGCWC 2 cut(s) 8, 97
Alw26I GTCTC 2 cut(s) 68, 166
AlwI GGATC 1 cut(s) 328
AoxI GGCC 1 cut(s) 68
ApeKI GCWGC 1 cut(s) 356
BanII GRGCYC 2 cut(s) 8, 97
BauI CACGAG 1 cut(s) 75
Bbv12I GWGCWC 2 cut(s) 8, 97
BbvI GCAGC 1 cut(s) 343
BciT130I CCWGG 1 cut(s) 284
BcoDI GTCTC 2 cut(s) 68, 166
BfaI CTAG 3 cut(s) 90, 219, 324
BfmI CTRYAG 1 cut(s) 82
BisI GCNGC 1 cut(s) 357
BlsI GCNGC 1 cut(s) 358
Bme1390I CCNGG 1 cut(s) 284
BmrFI CCNGG 1 cut(s) 284
BpuEI CTTGAG 1 cut(s) 8
BsaI GGTCTC 1 cut(s) 166
BsaJI CCNNGG 2 cut(s) 153, 282
Bsc4I CCNNNNNNNGG 1 cut(s) 77
BseBI CCWGG 1 cut(s) 284
BseDI CCNNGG 2 cut(s) 153, 282
BseLI CCNNNNNNNGG 1 cut(s) 77
BseMII CTCAG 2 cut(s) 79, 177
BseRI GAGGAG 1 cut(s) 141
BseXI GCAGC 1 cut(s) 343
BsgI GTGCAG 1 cut(s) 248
BshFI GGCC 1 cut(s) 70
BsiHKAI GWGCWC 2 cut(s) 8, 97
BslI CCNNNNNNNGG 1 cut(s) 77
BsmAI GTCTC 2 cut(s) 68, 166
BsnI GGCC 1 cut(s) 70
Bso31I GGTCTC 1 cut(s) 166
Bsp1286I GDGCHC 2 cut(s) 8, 97
Bsp143I GATC 1 cut(s) 320
BspACI CCGC 2 cut(s) 224, 233
BspANI GGCC 1 cut(s) 70
BspCNI CTCAG 2 cut(s) 78, 176
BspPI GGATC 1 cut(s) 328
BspTNI GGTCTC 1 cut(s) 166
BssECI CCNNGG 2 cut(s) 153, 282
BssMI GATC 1 cut(s) 320
BssSI CACGAG 1 cut(s) 75
BssT1I CCWWGG 1 cut(s) 153
Bst2BI CACGAG 1 cut(s) 75
Bst2UI CCWGG 1 cut(s) 284
Bst6I CTCTTC 1 cut(s) 200
BstC8I GCNNGC 1 cut(s) 231
BstDEI CTNAG 2 cut(s) 65, 163
BstKTI GATC 1 cut(s) 323
BstMAI GTCTC 2 cut(s) 68, 166
BstMBI GATC 1 cut(s) 320
BstMWI GCNNNNNNNGC 2 cut(s) 35, 230
BstNI CCWGG 1 cut(s) 284
BstSCI CCNGG 1 cut(s) 282
BstSFI CTRYAG 1 cut(s) 82
BstV1I GCAGC 1 cut(s) 343
BstX2I RGATCY 1 cut(s) 320
BstYI RGATCY 1 cut(s) 320
BsuRI GGCC 1 cut(s) 70
Cac8I GCNNGC 1 cut(s) 231
CseI GACGC 1 cut(s) 141
CviJI RGCY 9 cut(s) 6, 21, 70, 81, 87, 95, 105, 167, 257
CviKI_1 RGCY 9 cut(s) 6, 21, 70, 81, 87, 95, 105, 167, 257
DdeI CTNAG 2 cut(s) 65, 163
DpnI GATC 1 cut(s) 322
DpnII GATC 1 cut(s) 320
Eam1104I CTCTTC 1 cut(s) 200
EarI CTCTTC 1 cut(s) 200
EciI GGCGGA 1 cut(s) 248
Ecl136II GAGCTC 2 cut(s) 6, 95
Eco130I CCWWGG 1 cut(s) 153
Eco24I GRGCYC 2 cut(s) 8, 97
Eco31I GGTCTC 1 cut(s) 166
Eco53kI GAGCTC 2 cut(s) 6, 95
EcoICRI GAGCTC 2 cut(s) 6, 95
EcoRII CCWGG 1 cut(s) 282
EcoT14I CCWWGG 1 cut(s) 153
EcoT38I GRGCYC 2 cut(s) 8, 97
ErhI CCWWGG 1 cut(s) 153
FaiI YATR 3 cut(s) 264, 318, 367
Fnu4HI GCNGC 1 cut(s) 357
FriOI GRGCYC 2 cut(s) 8, 97
Fsp4HI GCNGC 1 cut(s) 357
FspBI CTAG 3 cut(s) 90, 219, 324
GluI GCNGC 1 cut(s) 357
HaeIII GGCC 1 cut(s) 70
HgaI GACGC 1 cut(s) 141
HindIII AAGCTT 1 cut(s) 103
HinfI GANTC 1 cut(s) 73
Hpy188III TCNNGA 1 cut(s) 15
HpyAV CCTTC 1 cut(s) 116
HpyCH4V TGCA 2 cut(s) 229, 298
HpyF10VI GCNNNNNNNGC 2 cut(s) 35, 230
HpyF3I CTNAG 2 cut(s) 65, 163
Kzo9I GATC 1 cut(s) 320
LpnPI CCDG 6 cut(s) 24, 52, 194, 215, 269, 296
Lsp1109I GCAGC 1 cut(s) 343
MaeI CTAG 3 cut(s) 90, 219, 324
MalI GATC 1 cut(s) 322
MboI GATC 1 cut(s) 320
MboII GAAGA 9 cut(s) 54, 57, 60, 63, 66, 69, 111, 217, 353
MflI RGATCY 1 cut(s) 320
MhlI GDGCHC 2 cut(s) 8, 97
MluCI AATT 1 cut(s) 170
MlyI GAGTC 1 cut(s) 67
MnlI CCTC 5 cut(s) 32, 119, 122, 200, 304
MseI TTAA 1 cut(s) 108
MspR9I CCNGG 1 cut(s) 284
MvaI CCWGG 1 cut(s) 284
MwoI GCNNNNNNNGC 2 cut(s) 35, 230
NdeII GATC 1 cut(s) 320
PkrI GCNGC 1 cut(s) 358
PleI GAGTC 1 cut(s) 67
PpsI GAGTC 1 cut(s) 67
Psp124BI GAGCTC 2 cut(s) 8, 97
Psp6I CCWGG 1 cut(s) 282
PspGI CCWGG 1 cut(s) 282
PsuI RGATCY 1 cut(s) 320
SacI GAGCTC 2 cut(s) 8, 97
SaqAI TTAA 1 cut(s) 108
SatI GCNGC 1 cut(s) 357
Sau3AI GATC 1 cut(s) 320
SchI GAGTC 1 cut(s) 67
ScrFI CCNGG 1 cut(s) 284
SduI GDGCHC 2 cut(s) 8, 97
SetI ASST 7 cut(s) 8, 97, 107, 159, 192, 288, 315
SfcI CTRYAG 1 cut(s) 82
SmlI CTYRAG 1 cut(s) 23
SmoI CTYRAG 1 cut(s) 23
Sse9I AATT 1 cut(s) 170
SsiI CCGC 2 cut(s) 224, 233
SspMI CTAG 3 cut(s) 90, 219, 324
SstI GAGCTC 2 cut(s) 8, 97
StyD4I CCNGG 1 cut(s) 282
StyI CCWWGG 1 cut(s) 153
TaqI TCGA 1 cut(s) 97
TasI AATT 1 cut(s) 170
Tru1I TTAA 1 cut(s) 108
Tru9I TTAA 1 cut(s) 108
TseI GCWGC 1 cut(s) 356
XspI CTAG 3 cut(s) 90, 219, 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.