FvH4_6g48040

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0011588
Physical Location & Seq
Reverse (-)
36257079 .. 36259067
1989 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g48040.t1

Sequence Viewer

Length: 1419 bp
ATGGCCCAGACCTGTCTCTCCATGAGACAGCTCAAGCAAATCCACGCCCGCGCAATCCTCTCCAATCTCCACAACCACGCCGTCGTCCTCGGCAAGATGTTCCGCTTCGCCGCGGTCTCACCCTCCGGCGACTTAAACTATGCCCACCAACTGTTCGATCAAATGCTCCAACCAACCACTTTCTTCTACAACCTCCTCATCCGGGGTCACTCCAAAAGCTGGTCCCCGTGGCTTTCAGTGGTTCTATTCAACAAGATGAGACTGAACTCAGTCGATCCGGATGAGTTCACCTTCACATTTCTGCTGAAATCGCGTTCGAATATGAGAGTGAACATGGGAAATGATGAGATACATGGGGCTGTGATGAAGTCTGGATTTTCTTTGCACTTGTATGTGCAGAACTCGTTGATTCATTTGTATGCGGGGAGAGGGATTCCCAGTGCGGCTAGGAGAGTGTTTGATGAGGCTGTGGCTGCTGATGTTGTGTCATGGTCGGGTTTGGTTATTGCTCATGTGAGGGCCAATGAGTTGGATTTGGCAAGGCGGGTGTTTGATGAAATGCCTGAGAGGGATGTTGTTTCGTGGACTACCATGATATCGGGGTATTCACAAGCTAAGTGTTCAAGGGAAGCGCTCACGTTGTTTTGGAAGATGAATTGTGAGGGAGTGATGCCGGATGAGGTTACGATGGTGAGTGTGATATCAGCCTGCACGGATTTAGGAGATGTTCAGACCGGGATAAGCATCCACCGGTTTATTGAGGAGAATGGATTTGCTTGGATGGTTTCGCTCTGCAATGCGCTGATTGACATGTATGCAAAGTGTGGGTGCATGGACCGAGCATGGCAACTGTTTGATAGCATGAGCCAGAAGAGCTATATTACATGGAATTCTATGATTTCAGCTTGTGCAAACCATGGCAATGCTGATGATGCATTTGGGTTGTTTGAGTGTATGGTTAGTGCTGGTGTTCCACCTGATGGGGTCACATTCTTGGCCCTTTTAGTTGCTTATACACACAAAGGGTTGGTGGATGAAGGGCTCAGGCTATTTGAGAGAATGCAAAGGGAGTACAGAATCGAGGCTTGCATTGAGCATTATGGGTGTGTGGCAGATATGTTAGGCAAGGCAGGGCGATTGGAGGAAGCATACAGATTAATTAGTCGCATGCCGATTCCAGGTAACGATGTTGTTTGGGGAACACTGCTTGCAGCTTGTAGATCTTATGGCGATGTTGATATGGGTGAGAAGGTTGTAAAGAGGCTAATAGAGCTGAAACCGGATGAAGGTGGATACTATATTCTCCTTCGCGATATTTATGTTGCAGCAGGAAGGATGGCAGAAGCTAATGATATGAGGCAGACAATGATGGATAATGGTGCTAGTAAGACTCCCGGAAGAAGTTGGGTCGGAGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

473

Amino Acids

52.87

Weight (kDa)

6.24

Isoelectric Point (pI)

42.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 58 - 103 2.7e-07 PPR repeat family
PPR_2 PF13041 190 - 237 1.7e-10 PPR repeat family
PPR PF01535 193 - 223 9.7e-07 PPR repeat
PPR_long PF17177 258 - 387 7.5e-07 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 293 - 335 6.5e-10 PPR repeat family
PPR PF01535 294 - 324 8.4e-09 PPR repeat
E_motif PF20431 409 - 470 4.7e-12 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 219, 980
AccII CGCG 4 cut(s) 51, 113, 313, 1311
AccIII TCCGGA 1 cut(s) 277
AciI CCGC 7 cut(s) 49, 103, 111, 113, 422, 443, 544
AclWI GGATC 1 cut(s) 269
AcsI RAATTY 1 cut(s) 889
AfaI GTAC 1 cut(s) 1073
AfeI AGCGCT 1 cut(s) 633
AfiI CCNNNNNNNGG 5 cut(s) 202, 219, 980, 1178, 1286
AflIII ACRYGT 1 cut(s) 810
AgeI ACCGGT 1 cut(s) 750
AgsI TTSAA 2 cut(s) 250, 624
AjnI CCWGG 1 cut(s) 1177
AluBI AGCT 8 cut(s) 31, 219, 614, 876, 905, 1214, 1273, 1346
AluI AGCT 8 cut(s) 31, 219, 614, 876, 905, 1214, 1273, 1346
Alw26I GTCTC 4 cut(s) 19, 20, 121, 253
AlwI GGATC 1 cut(s) 269
Aor13HI TCCGGA 1 cut(s) 277
Aor51HI AGCGCT 1 cut(s) 633
AoxI GGCC 3 cut(s) 3, 519, 996
ApeKI GCWGC 3 cut(s) 473, 1211, 1325
ApoI RAATTY 1 cut(s) 889
AseI ATTAAT 1 cut(s) 1157
AsiGI ACCGGT 1 cut(s) 750
AspLEI GCGC 3 cut(s) 53, 634, 802
AspS9I GGNCC 5 cut(s) 4, 222, 519, 835, 997
AsuC2I CCSGG 3 cut(s) 203, 736, 1395
AsuHPI GGTGA 4 cut(s) 111, 280, 703, 1256
AsuII TTCGAA 1 cut(s) 317
AvaII GGWCC 2 cut(s) 222, 835
BanII GRGCYC 1 cut(s) 1044
BbvI GCAGC 3 cut(s) 460, 1223, 1337
BccI CCATC 5 cut(s) 682, 775, 974, 1330, 1363
BceAI ACGGC 1 cut(s) 65
BciT130I CCWGG 1 cut(s) 1179
BciVI GTATCC 1 cut(s) 1286
BcnI CCSGG 3 cut(s) 203, 736, 1395
BcoDI GTCTC 4 cut(s) 19, 20, 121, 253
BfaI CTAG 2 cut(s) 447, 1383
BfoI RGCGCY 1 cut(s) 635
BfuI GTATCC 1 cut(s) 1286
BglII AGATCT 1 cut(s) 1220
BisI GCNGC 5 cut(s) 111, 444, 474, 1212, 1326
BlsI GCNGC 5 cut(s) 112, 445, 475, 1213, 1327
Bme1390I CCNGG 4 cut(s) 203, 736, 1179, 1395
Bme18I GGWCC 2 cut(s) 222, 835
BmgT120I GGNCC 5 cut(s) 4, 222, 519, 835, 997
BmiI GGNNCC 1 cut(s) 224
BmrFI CCNGG 4 cut(s) 203, 736, 1179, 1395
BmrI ACTGGG 1 cut(s) 432
BmsI GCATC 3 cut(s) 660, 753, 922
BmuI ACTGGG 1 cut(s) 432
Bpu10I CCTNAGC 1 cut(s) 1043
Bpu14I TTCGAA 1 cut(s) 317
BpuEI CTTGAG 1 cut(s) 17
BpuMI CCSGG 3 cut(s) 203, 736, 1395
BsaBI GATNNNNATC 1 cut(s) 743
BsaI GGTCTC 1 cut(s) 121
BsaJI CCNNGG 5 cut(s) 88, 111, 202, 227, 916
BsaWI WCCGGW 3 cut(s) 277, 750, 1279
Bsc4I CCNNNNNNNGG 5 cut(s) 202, 219, 980, 1178, 1286
Bse118I RCCGGY 1 cut(s) 750
Bse1I ACTGG 1 cut(s) 438
Bse3DI GCAATG 2 cut(s) 802, 928
Bse8I GATNNNNATC 1 cut(s) 743
BseAI TCCGGA 1 cut(s) 277
BseBI CCWGG 1 cut(s) 1179
BseDI CCNNGG 5 cut(s) 88, 111, 202, 227, 916
BseGI GGATG 9 cut(s) 198, 286, 577, 682, 744, 786, 1039, 1288, 1341
BseJI GATNNNNATC 1 cut(s) 743
BseLI CCNNNNNNNGG 5 cut(s) 202, 219, 980, 1178, 1286
BseMI GCAATG 2 cut(s) 802, 928
BseMII CTCAG 3 cut(s) 282, 555, 1057
BseNI ACTGG 1 cut(s) 438
BseRI GAGGAG 2 cut(s) 185, 776
BseXI GCAGC 3 cut(s) 460, 1223, 1337
BsgI GTGCAG 2 cut(s) 416, 694
Bsh1236I CGCG 4 cut(s) 51, 113, 313, 1311
BshFI GGCC 3 cut(s) 5, 521, 998
BshTI ACCGGT 1 cut(s) 750
BsiSI CCGG 8 cut(s) 126, 202, 278, 674, 735, 751, 1280, 1395
BslFI GGGAC 1 cut(s) 208
BslI CCNNNNNNNGG 5 cut(s) 202, 219, 980, 1178, 1286
BsmAI GTCTC 4 cut(s) 19, 20, 121, 253
BsmFI GGGAC 1 cut(s) 208
BsmI GAATGC 1 cut(s) 1065
BsnI GGCC 3 cut(s) 5, 521, 998
Bso31I GGTCTC 1 cut(s) 121
Bsp119I TTCGAA 1 cut(s) 317
Bsp1286I GDGCHC 1 cut(s) 1044
Bsp13I TCCGGA 1 cut(s) 277
Bsp143I GATC 3 cut(s) 157, 274, 1220
Bsp19I CCATGG 1 cut(s) 916
Bsp68I TCGCGA 1 cut(s) 1311
BspACI CCGC 7 cut(s) 49, 103, 111, 113, 422, 443, 544
BspANI GGCC 3 cut(s) 5, 521, 998
BspCNI CTCAG 3 cut(s) 281, 556, 1056
BspEI TCCGGA 1 cut(s) 277
BspFNI CGCG 4 cut(s) 51, 113, 313, 1311
BspLI GGNNCC 1 cut(s) 224
BspPI GGATC 1 cut(s) 269
BspQI GCTCTTC 1 cut(s) 866
BspT104I TTCGAA 1 cut(s) 317
BspTNI GGTCTC 1 cut(s) 121
BsrDI GCAATG 2 cut(s) 802, 928
BsrFI RCCGGY 1 cut(s) 750
BsrI ACTGG 1 cut(s) 438
BssAI RCCGGY 1 cut(s) 750
BssECI CCNNGG 5 cut(s) 88, 111, 202, 227, 916
BssMI GATC 3 cut(s) 157, 274, 1220
BssT1I CCWWGG 1 cut(s) 916
Bst2UI CCWGG 1 cut(s) 1179
Bst4CI ACNGT 2 cut(s) 153, 852
Bst6I CTCTTC 1 cut(s) 866
BstBI TTCGAA 1 cut(s) 317
BstC8I GCNNGC 5 cut(s) 49, 709, 1087, 1169, 1209
BstDEI CTNAG 4 cut(s) 268, 564, 615, 1043
BstDSI CCRYGG 3 cut(s) 111, 227, 916
BstF5I GGATG 9 cut(s) 198, 286, 577, 682, 744, 786, 1039, 1288, 1341
BstFNI CGCG 4 cut(s) 51, 113, 313, 1311
BstH2I RGCGCY 1 cut(s) 635
BstHHI GCGC 3 cut(s) 53, 634, 802
BstKTI GATC 3 cut(s) 160, 277, 1223
BstMAI GTCTC 4 cut(s) 19, 20, 121, 253
BstMBI GATC 3 cut(s) 157, 274, 1220
BstMWI GCNNNNNNNGC 5 cut(s) 310, 473, 873, 932, 1270
BstNI CCWGG 1 cut(s) 1179
BstNSI RCATGY 2 cut(s) 814, 1171
BstSCI CCNGG 4 cut(s) 201, 734, 1177, 1393
BstUI CGCG 4 cut(s) 51, 113, 313, 1311
BstV1I GCAGC 3 cut(s) 460, 1223, 1337
BstX2I RGATCY 1 cut(s) 1220
BstXI CCANNNNNNTGG 1 cut(s) 529
BstYI RGATCY 1 cut(s) 1220
BsuI GTATCC 1 cut(s) 1286
BsuRI GGCC 3 cut(s) 5, 521, 998
BtgI CCRYGG 3 cut(s) 111, 227, 916
BtgZI GCGATG 1 cut(s) 1245
BtsCI GGATG 9 cut(s) 198, 286, 577, 682, 744, 786, 1039, 1288, 1341
BtsI GCAGTG 1 cut(s) 1202
BtsIMutI CAGTG 3 cut(s) 243, 445, 1202
BtuMI TCGCGA 1 cut(s) 1311
Cac8I GCNNGC 5 cut(s) 49, 709, 1087, 1169, 1209
CfoI GCGC 3 cut(s) 53, 634, 802
Cfr10I RCCGGY 1 cut(s) 750
Cfr13I GGNCC 5 cut(s) 4, 222, 519, 835, 997
Cfr42I CCGCGG 1 cut(s) 114
Csp6I GTAC 1 cut(s) 1072
CspAI ACCGGT 1 cut(s) 750
CviQI GTAC 1 cut(s) 1072
DdeI CTNAG 4 cut(s) 268, 564, 615, 1043
DpnI GATC 3 cut(s) 159, 276, 1222
DpnII GATC 3 cut(s) 157, 274, 1220
Eam1104I CTCTTC 1 cut(s) 866
EarI CTCTTC 1 cut(s) 866
Eco130I CCWWGG 1 cut(s) 916
Eco24I GRGCYC 1 cut(s) 1044
Eco31I GGTCTC 1 cut(s) 121
Eco32I GATATC 2 cut(s) 597, 702
Eco47I GGWCC 2 cut(s) 222, 835
Eco47III AGCGCT 1 cut(s) 633
EcoRI GAATTC 1 cut(s) 889
EcoRII CCWGG 1 cut(s) 1177
EcoRV GATATC 2 cut(s) 597, 702
EcoT14I CCWWGG 1 cut(s) 916
EcoT22I ATGCAT 1 cut(s) 937
EcoT38I GRGCYC 1 cut(s) 1044
ErhI CCWWGG 1 cut(s) 916
FaqI GGGAC 1 cut(s) 208
FauI CCCGC 3 cut(s) 56, 415, 537
Fnu4HI GCNGC 5 cut(s) 111, 444, 474, 1212, 1326
FokI GGATG 9 cut(s) 185, 293, 584, 689, 731, 793, 1046, 1295, 1348
FriOI GRGCYC 1 cut(s) 1044
Fsp4HI GCNGC 5 cut(s) 111, 444, 474, 1212, 1326
FspBI CTAG 2 cut(s) 447, 1383
GlaI GCGC 3 cut(s) 52, 633, 801
GluI GCNGC 5 cut(s) 111, 444, 474, 1212, 1326
HaeII RGCGCY 1 cut(s) 635
HaeIII GGCC 3 cut(s) 5, 521, 998
HapII CCGG 8 cut(s) 126, 202, 278, 674, 735, 751, 1280, 1395
HhaI GCGC 3 cut(s) 53, 634, 802
Hin6I GCGC 3 cut(s) 51, 632, 800
HinP1I GCGC 3 cut(s) 51, 632, 800
HinfI GANTC 5 cut(s) 409, 433, 1077, 1174, 1390
HpaII CCGG 8 cut(s) 126, 202, 278, 674, 735, 751, 1280, 1395
HphI GGTGA 4 cut(s) 111, 280, 703, 1256
Hpy166II GTNNAC 3 cut(s) 288, 331, 585
Hpy188I TCNGA 2 cut(s) 732, 1412
Hpy188III TCNNGA 3 cut(s) 278, 372, 1310
Hpy8I GTNNAC 3 cut(s) 288, 331, 585
Hpy99I CGWCG 1 cut(s) 86
HpyAV CCTTC 6 cut(s) 301, 1031, 1243, 1280, 1316, 1326
HpyCH4III ACNGT 2 cut(s) 153, 852
HpyCH4IV ACGT 1 cut(s) 638
HpyF10VI GCNNNNNNNGC 5 cut(s) 310, 473, 873, 932, 1270
HpyF3I CTNAG 4 cut(s) 268, 564, 615, 1043
HpySE526I ACGT 1 cut(s) 638
HspAI GCGC 3 cut(s) 51, 632, 800
Kpn2I TCCGGA 1 cut(s) 277
KspI CCGCGG 1 cut(s) 114
Kzo9I GATC 3 cut(s) 157, 274, 1220
LguI GCTCTTC 1 cut(s) 866
LmnI GCTCC 2 cut(s) 171, 1412
Lsp1109I GCAGC 3 cut(s) 460, 1223, 1337
LweI GCATC 3 cut(s) 660, 753, 922
MaeI CTAG 2 cut(s) 447, 1383
MaeII ACGT 1 cut(s) 638
MaeIII GTNAC 4 cut(s) 206, 682, 985, 1181
MalI GATC 3 cut(s) 159, 276, 1222
MboI GATC 3 cut(s) 157, 274, 1220
MboII GAAGA 4 cut(s) 175, 661, 883, 1410
MflI RGATCY 1 cut(s) 1220
MhlI GDGCHC 1 cut(s) 1044
MluCI AATT 3 cut(s) 655, 889, 1158
MlyI GAGTC 1 cut(s) 1384
MmeI TCCRAC 3 cut(s) 193, 510, 1390
Mph1103I ATGCAT 1 cut(s) 937
MroI TCCGGA 1 cut(s) 277
MseI TTAA 2 cut(s) 134, 1157
MslI CAYNNNNRTG 3 cut(s) 390, 417, 921
MspA1I CMGCKG 1 cut(s) 113
MspI CCGG 8 cut(s) 126, 202, 278, 674, 735, 751, 1280, 1395
MspR9I CCNGG 4 cut(s) 203, 736, 1179, 1395
Mva1269I GAATGC 1 cut(s) 1065
MvaI CCWGG 1 cut(s) 1179
MvnI CGCG 4 cut(s) 51, 113, 313, 1311
MwoI GCNNNNNNNGC 5 cut(s) 310, 473, 873, 932, 1270
NciI CCSGG 3 cut(s) 203, 736, 1395
NcoI CCATGG 1 cut(s) 916
NdeII GATC 3 cut(s) 157, 274, 1220
NlaIV GGNNCC 1 cut(s) 224
NmeAIII GCCGAG 1 cut(s) 69
NmuCI GTSAC 2 cut(s) 206, 985
NruI TCGCGA 1 cut(s) 1311
NsiI ATGCAT 1 cut(s) 937
NspI RCATGY 2 cut(s) 814, 1171
NspV TTCGAA 1 cut(s) 317
PaeI GCATGC 1 cut(s) 1171
PciI ACATGT 1 cut(s) 810
PciSI GCTCTTC 1 cut(s) 866
PctI GAATGC 1 cut(s) 1065
PfeI GAWTC 4 cut(s) 409, 433, 1077, 1174
PflMI CCANNNNNTGG 2 cut(s) 219, 980
PfoI TCCNGGA 1 cut(s) 1393
PinAI ACCGGT 1 cut(s) 750
PkrI GCNGC 5 cut(s) 112, 445, 475, 1213, 1327
PleI GAGTC 1 cut(s) 1384
PpsI GAGTC 1 cut(s) 1384
PscI ACATGT 1 cut(s) 810
PshBI ATTAAT 1 cut(s) 1157
Psp6I CCWGG 1 cut(s) 1177
PspGI CCWGG 1 cut(s) 1177
PspN4I GGNNCC 1 cut(s) 224
PspPI GGNCC 5 cut(s) 4, 222, 519, 835, 997
PsuI RGATCY 1 cut(s) 1220
RruI TCGCGA 1 cut(s) 1311
RsaI GTAC 1 cut(s) 1073
RsaNI GTAC 1 cut(s) 1072
RseI CAYNNNNRTG 3 cut(s) 390, 417, 921
SacII CCGCGG 1 cut(s) 114
SapI GCTCTTC 1 cut(s) 866
SaqAI TTAA 2 cut(s) 134, 1157
SatI GCNGC 5 cut(s) 111, 444, 474, 1212, 1326
Sau3AI GATC 3 cut(s) 157, 274, 1220
Sau96I GGNCC 5 cut(s) 4, 222, 519, 835, 997
SchI GAGTC 1 cut(s) 1384
ScrFI CCNGG 4 cut(s) 203, 736, 1179, 1395
SduI GDGCHC 1 cut(s) 1044
SfaNI GCATC 3 cut(s) 660, 753, 922
Sfr303I CCGCGG 1 cut(s) 114
SfuI TTCGAA 1 cut(s) 317
SgrBI CCGCGG 1 cut(s) 114
SinI GGWCC 2 cut(s) 222, 835
SmiMI CAYNNNNRTG 3 cut(s) 390, 417, 921
SmlI CTYRAG 1 cut(s) 32
SmoI CTYRAG 1 cut(s) 32
SphI GCATGC 1 cut(s) 1171
Sse9I AATT 3 cut(s) 655, 889, 1158
SsiI CCGC 7 cut(s) 49, 103, 111, 113, 422, 443, 544
SspMI CTAG 2 cut(s) 447, 1383
StyD4I CCNGG 4 cut(s) 201, 734, 1177, 1393
StyI CCWWGG 1 cut(s) 916
TaaI ACNGT 2 cut(s) 153, 852
TaiI ACGT 1 cut(s) 641
TaqI TCGA 4 cut(s) 156, 273, 317, 1080
TaqII GACCGA 1 cut(s) 852
TasI AATT 3 cut(s) 655, 889, 1158
TatI WGTACW 1 cut(s) 1071
TauI GCSGC 2 cut(s) 113, 446
TfiI GAWTC 4 cut(s) 409, 433, 1077, 1174
Tru1I TTAA 2 cut(s) 134, 1157
Tru9I TTAA 2 cut(s) 134, 1157
TscAI CASTG 3 cut(s) 243, 445, 1209
TseFI GTSAC 2 cut(s) 206, 985
TseI GCWGC 3 cut(s) 473, 1211, 1325
Tsp45I GTSAC 2 cut(s) 206, 985
TspDTI ATGAA 6 cut(s) 380, 401, 570, 668, 1050, 1299
TspGWI ACGGA 1 cut(s) 728
TspRI CASTG 3 cut(s) 243, 445, 1209
Van91I CCANNNNNTGG 2 cut(s) 219, 980
VpaK11BI GGWCC 2 cut(s) 222, 835
VspI ATTAAT 1 cut(s) 1157
XapI RAATTY 1 cut(s) 889
XceI RCATGY 2 cut(s) 814, 1171
XspI CTAG 2 cut(s) 447, 1383
Zsp2I ATGCAT 1 cut(s) 937
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.