Prupe.3G263900_v2.0.a1

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
Physical Location & Seq
Reverse (-)
24851321 .. 24852873
1553 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G263900.1

Sequence Viewer

Length: 1488 bp
ATGCTACAGCCAGAGCAACAACAATGGCAGGTAAGTCTGAGCTTCAGCCTGGGCTACATGGCCCAGAACTGCCTCTCCATGAGACACCTCAAGCAAATCCACGCCCGCTCAATCGTCACAAACCTACACCACCACGCCATCGTCTTCGCCAAGCTGTTCCGCTTCGCCGCTGTCTCACCCTCCGGTGACTTAAACTACGCGCACCGCCTGTTCTGTCATATGCCCCAACCAACCACTTTCTTGTATAATACCCTCATCCGGGGTTACTCTAAAAGTTCGTCGCCTTCGCAATCGGTTCTTCTGTTTAACCAGATGAGGCTAAACAGCCTCAGCCCAGATGAGTTTACCTTCACATTTTTGCTGAAATCGCGGTCAAGAATGAAAATTGATGTGCCTTCGATAATGGCGTCCGATGAGATTCATGGGCTCGTGTTAAAGTTTGGGTTTTGCTCACATTTGTTTGTACAGAACGCATTGATTCATATATACGGGGCGAGAGGGATACCGCTTGCGGCAAGGCGAGTTTTCGATGAGGCGGTGGCTCCGGATGTCGTTTCTTGGTCGGGTTTGGTTAGTGCGCATGTGAGAGCGGGGGAATTGGACTTTGCACGGCAGGTGTTTGATGAGATGCCTGAGAGGGATGTGGTTTCTTGGACCGCTATGATTTCTGCCTATTCGCAAGCAAAGTATTCGAGGGAAGCGCTTGAGTTGTTTTGGGAGATGAATCGCGCGGGAGTGAGACCCGACGAGGTCACCATGGTCAGTGTGATCTCAGCTTGCACGGATTGGAAAGATGTGCAAACGGGGATATGCATCCACCAATATATTGATGAGAATGGGTTTGCTTGGATGGTTTCACTTTGCAATGCGCTAATTGACATGTATGCAAAGTGTGGATGCATGGATCGAGCGTGGCAAGTATTCAATAAGATGAACCAGAAGAGCTTGGTCACTTGGAATTCGATGATTTCAGCTTGTGCAAACCATGGCAATGCTGATGATGCATTCGGTTTGTTCGATAGTATGATTAGTGCCGGTTTTCCTCCAGACGGGGTCACGTTTCTAGCACTTTTAGTTGCTTATACACACAAGGGATTGGTAGACGAAGGGCTCTGGCTATTTGATAGAATGCAAAAAGACTACAGAATCGAGGCACAAATTGAGCATTACGGGTGTGTGGTAGATATGTTAGGCAAGGCAGGGCGGTTGGAGGAAGCATACAATTTGATTAGCAGTATGCCAGTTCCAGGAAATGATGTCGTTTGGGGAACGCTCCTCACAGCGTGCAGAACTTACGGTGATGCTGATATGGGCGAGAGGGTTGTGAAGAGGCTGTTAGAGTTGAAGCCAGATGAAGGTGGCTACTATATTCTCCTTCGTGATATTTATGTTGCTGCTGGAAGGACTGCGGAAGCAAATGCTATGAGGCAAACCATGATGGTTAACGGTGCTAGTAAGACTCCTGGATGCAGTTGGGTGGGAGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

496

Amino Acids

55.51

Weight (kDa)

6.31

Isoelectric Point (pI)

38.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 604
Acc16I TGCGCA 1 cut(s) 579
Acc36I ACCTGC 2 cut(s) 19, 604
AccBSI CCGCTC 2 cut(s) 108, 590
AccI GTMKAC 1 cut(s) 1101
AccII CGCG 4 cut(s) 200, 370, 729, 731
AccIII TCCGGA 1 cut(s) 544
AclWI GGATC 1 cut(s) 912
AcsI RAATTY 1 cut(s) 958
AcuI CTGAAG 1 cut(s) 28
AcyI GRCGYC 1 cut(s) 407
AdeI CACNNNGTG 1 cut(s) 1284
AfaI GTAC 1 cut(s) 465
AfeI AGCGCT 1 cut(s) 702
AfiI CCNNNNNNNGG 5 cut(s) 258, 259, 1049, 1247, 1355
AflIII ACRYGT 1 cut(s) 879
AgsI TTSAA 2 cut(s) 925, 1345
AjnI CCWGG 3 cut(s) 48, 1246, 1462
AloI GAACNNNNNNTCC 2 cut(s) 59, 91
AluBI AGCT 5 cut(s) 42, 154, 776, 945, 974
AluI AGCT 5 cut(s) 42, 154, 776, 945, 974
Alw26I GTCTC 3 cut(s) 76, 178, 733
AlwI GGATC 1 cut(s) 912
Aor13HI TCCGGA 1 cut(s) 544
Aor51HI AGCGCT 1 cut(s) 702
AoxI GGCC 1 cut(s) 60
ApeKI GCWGC 1 cut(s) 1394
ApoI RAATTY 1 cut(s) 958
AspLEI GCGC 5 cut(s) 202, 580, 703, 731, 871
AspS9I GGNCC 2 cut(s) 61, 654
AsuC2I CCSGG 1 cut(s) 260
AsuHPI GGTGA 4 cut(s) 168, 197, 745, 1310
AvaII GGWCC 1 cut(s) 654
BanII GRGCYC 2 cut(s) 429, 1113
BauI CACGAG 1 cut(s) 428
BbsI GAAGAC 1 cut(s) 136
BbvCI CCTCAGC 1 cut(s) 329
BbvI GCAGC 1 cut(s) 1381
BccI CCATC 3 cut(s) 146, 844, 1432
BceAI ACGGC 1 cut(s) 626
BcgI CGANNNNNNTGC 2 cut(s) 672, 706
BciT130I CCWGG 3 cut(s) 50, 1248, 1464
BciVI GTATCC 1 cut(s) 495
BcnI CCSGG 1 cut(s) 260
BcoDI GTCTC 3 cut(s) 76, 178, 733
BfaI CTAG 2 cut(s) 1064, 1452
BfmI CTRYAG 2 cut(s) 5, 1141
BfoI RGCGCY 1 cut(s) 704
BfuAI ACCTGC 2 cut(s) 19, 604
BfuI GTATCC 1 cut(s) 495
BisI GCNGC 3 cut(s) 168, 513, 1395
BlsI GCNGC 3 cut(s) 169, 514, 1396
Bme1390I CCNGG 4 cut(s) 50, 260, 1248, 1464
Bme18I GGWCC 1 cut(s) 654
BmgT120I GGNCC 2 cut(s) 61, 654
BmiI GGNNCC 1 cut(s) 543
BmrFI CCNGG 4 cut(s) 50, 260, 1248, 1464
BmsI GCATC 6 cut(s) 618, 822, 887, 991, 1291, 1457
BpiI GAAGAC 1 cut(s) 136
BpmI CTGGAG 1 cut(s) 1029
Bpu10I CCTNAGC 1 cut(s) 329
BpuEI CTTGAG 2 cut(s) 74, 725
BpuMI CCSGG 1 cut(s) 260
BsaBI GATNNNNATC 1 cut(s) 812
BsaHI GRCGYC 1 cut(s) 407
BsaI GGTCTC 1 cut(s) 733
BsaJI CCNNGG 4 cut(s) 49, 259, 756, 985
BsaWI WCCGGW 2 cut(s) 182, 544
BsaXI ACNNNNNCTCC 2 cut(s) 59, 89
Bsc4I CCNNNNNNNGG 5 cut(s) 258, 259, 1049, 1247, 1355
Bse118I RCCGGY 1 cut(s) 1034
Bse1I ACTGG 1 cut(s) 1241
Bse3DI GCAATG 2 cut(s) 871, 997
Bse8I GATNNNNATC 1 cut(s) 812
BseAI TCCGGA 1 cut(s) 544
BseBI CCWGG 3 cut(s) 50, 1248, 1464
BseDI CCNNGG 4 cut(s) 49, 259, 756, 985
BseGI GGATG 7 cut(s) 255, 553, 646, 813, 855, 902, 1472
BseJI GATNNNNATC 1 cut(s) 812
BseLI CCNNNNNNNGG 5 cut(s) 258, 259, 1049, 1247, 1355
BseMI GCAATG 2 cut(s) 871, 997
BseMII CTCAG 4 cut(s) 29, 343, 624, 786
BseNI ACTGG 1 cut(s) 1241
BseRI GAGGAG 1 cut(s) 1265
BseXI GCAGC 1 cut(s) 1381
BsgI GTGCAG 1 cut(s) 1306
Bsh1236I CGCG 4 cut(s) 200, 370, 729, 731
BshFI GGCC 1 cut(s) 62
BsiSI CCGG 4 cut(s) 183, 259, 545, 1035
BslI CCNNNNNNNGG 5 cut(s) 258, 259, 1049, 1247, 1355
BsmAI GTCTC 3 cut(s) 76, 178, 733
BsmI GAATGC 2 cut(s) 1004, 1134
BsnI GGCC 1 cut(s) 62
Bso31I GGTCTC 1 cut(s) 733
Bsp1286I GDGCHC 2 cut(s) 429, 1113
Bsp13I TCCGGA 1 cut(s) 544
Bsp1407I TGTACA 1 cut(s) 463
Bsp143I GATC 2 cut(s) 768, 904
Bsp19I CCATGG 2 cut(s) 756, 985
BspANI GGCC 1 cut(s) 62
BspCNI CTCAG 4 cut(s) 30, 342, 625, 785
BspEI TCCGGA 1 cut(s) 544
BspFNI CGCG 4 cut(s) 200, 370, 729, 731
BspLI GGNNCC 1 cut(s) 543
BspMI ACCTGC 2 cut(s) 19, 604
BspPI GGATC 1 cut(s) 912
BspQI GCTCTTC 1 cut(s) 935
BspTNI GGTCTC 1 cut(s) 733
BsrBI CCGCTC 2 cut(s) 108, 590
BsrDI GCAATG 2 cut(s) 871, 997
BsrFI RCCGGY 1 cut(s) 1034
BsrGI TGTACA 1 cut(s) 463
BsrI ACTGG 1 cut(s) 1241
BssAI RCCGGY 1 cut(s) 1034
BssECI CCNNGG 4 cut(s) 49, 259, 756, 985
BssMI GATC 2 cut(s) 768, 904
BssNI GRCGYC 1 cut(s) 407
BssSI CACGAG 1 cut(s) 428
BssT1I CCWWGG 2 cut(s) 756, 985
Bst2BI CACGAG 1 cut(s) 428
Bst2UI CCWGG 3 cut(s) 50, 1248, 1464
Bst4CI ACNGT 2 cut(s) 1298, 1448
Bst6I CTCTTC 2 cut(s) 935, 1322
BstACI GRCGYC 1 cut(s) 407
BstAUI TGTACA 1 cut(s) 463
BstC8I GCNNGC 5 cut(s) 106, 510, 681, 778, 1285
BstDEI CTNAG 4 cut(s) 38, 329, 633, 772
BstDSI CCRYGG 2 cut(s) 756, 985
BstEII GGTNACC 1 cut(s) 751
BstF5I GGATG 7 cut(s) 255, 553, 646, 813, 855, 902, 1472
BstFNI CGCG 4 cut(s) 200, 370, 729, 731
BstH2I RGCGCY 1 cut(s) 704
BstHHI GCGC 5 cut(s) 202, 580, 703, 731, 871
BstKTI GATC 2 cut(s) 771, 907
BstMAI GTCTC 3 cut(s) 76, 178, 733
BstMBI GATC 2 cut(s) 768, 904
BstMWI GCNNNNNNNGC 2 cut(s) 367, 1001
BstNI CCWGG 3 cut(s) 50, 1248, 1464
BstNSI RCATGY 2 cut(s) 584, 883
BstPI GGTNACC 1 cut(s) 751
BstSCI CCNGG 4 cut(s) 48, 258, 1246, 1462
BstSFI CTRYAG 2 cut(s) 5, 1141
BstUI CGCG 4 cut(s) 200, 370, 729, 731
BstV1I GCAGC 1 cut(s) 1381
BstV2I GAAGAC 1 cut(s) 136
BsuI GTATCC 1 cut(s) 495
BsuRI GGCC 1 cut(s) 62
BtgI CCRYGG 2 cut(s) 756, 985
BtsCI GGATG 7 cut(s) 255, 553, 646, 813, 855, 902, 1472
BtsIMutI CAGTG 1 cut(s) 769
BveI ACCTGC 2 cut(s) 19, 604
Cac8I GCNNGC 5 cut(s) 106, 510, 681, 778, 1285
CfoI GCGC 5 cut(s) 202, 580, 703, 731, 871
Cfr10I RCCGGY 1 cut(s) 1034
Cfr13I GGNCC 2 cut(s) 61, 654
CseI GACGC 1 cut(s) 396
Csp6I GTAC 1 cut(s) 464
CviAII CATG 9 cut(s) 58, 79, 422, 581, 757, 880, 901, 986, 1435
CviQI GTAC 1 cut(s) 464
DdeI CTNAG 4 cut(s) 38, 329, 633, 772
DpnI GATC 2 cut(s) 770, 906
DpnII GATC 2 cut(s) 768, 904
DraIII CACNNNGTG 1 cut(s) 1284
Eam1104I CTCTTC 2 cut(s) 935, 1322
EarI CTCTTC 2 cut(s) 935, 1322
Eco130I CCWWGG 2 cut(s) 756, 985
Eco24I GRGCYC 2 cut(s) 429, 1113
Eco31I GGTCTC 1 cut(s) 733
Eco47I GGWCC 1 cut(s) 654
Eco47III AGCGCT 1 cut(s) 702
Eco57I CTGAAG 1 cut(s) 28
Eco91I GGTNACC 1 cut(s) 751
EcoO65I GGTNACC 1 cut(s) 751
EcoRI GAATTC 1 cut(s) 958
EcoRII CCWGG 3 cut(s) 48, 1246, 1462
EcoT14I CCWWGG 2 cut(s) 756, 985
EcoT22I ATGCAT 3 cut(s) 815, 902, 1006
EcoT38I GRGCYC 2 cut(s) 429, 1113
ErhI CCWWGG 2 cut(s) 756, 985
FaeI CATG 9 cut(s) 61, 82, 425, 584, 760, 883, 904, 989, 1438
FatI CATG 9 cut(s) 57, 78, 421, 580, 756, 879, 900, 985, 1434
FauI CCCGC 3 cut(s) 113, 583, 724
FauNDI CATATG 1 cut(s) 219
FblI GTMKAC 1 cut(s) 1101
Fnu4HI GCNGC 3 cut(s) 168, 513, 1395
FokI GGATG 7 cut(s) 242, 560, 653, 800, 862, 909, 1479
FriOI GRGCYC 2 cut(s) 429, 1113
Fsp4HI GCNGC 3 cut(s) 168, 513, 1395
FspAI RTGCGCAY 1 cut(s) 579
FspBI CTAG 2 cut(s) 1064, 1452
FspI TGCGCA 1 cut(s) 579
GlaI GCGC 5 cut(s) 201, 579, 702, 730, 870
GluI GCNGC 3 cut(s) 168, 513, 1395
GsuI CTGGAG 1 cut(s) 1029
HaeII RGCGCY 1 cut(s) 704
HaeIII GGCC 1 cut(s) 62
HapII CCGG 4 cut(s) 183, 259, 545, 1035
HgaI GACGC 1 cut(s) 396
HhaI GCGC 5 cut(s) 202, 580, 703, 731, 871
Hin1I GRCGYC 1 cut(s) 407
Hin1II CATG 9 cut(s) 61, 82, 425, 584, 760, 883, 904, 989, 1438
Hin6I GCGC 5 cut(s) 200, 578, 701, 729, 869
HinP1I GCGC 5 cut(s) 200, 578, 701, 729, 869
HincII GTYRAC 1 cut(s) 1444
HindII GTYRAC 1 cut(s) 1444
HinfI GANTC 5 cut(s) 418, 478, 724, 1146, 1459
HpaI GTTAAC 1 cut(s) 1444
HpaII CCGG 4 cut(s) 183, 259, 545, 1035
HphI GGTGA 4 cut(s) 168, 197, 745, 1310
Hpy166II GTNNAC 3 cut(s) 345, 1102, 1444
Hpy188I TCNGA 2 cut(s) 39, 412
Hpy188III TCNNGA 4 cut(s) 375, 545, 1046, 1379
Hpy8I GTNNAC 3 cut(s) 345, 1102, 1444
Hpy99I CGWCG 2 cut(s) 283, 749
HpyAV CCTTC 7 cut(s) 294, 358, 405, 1100, 1349, 1385, 1395
HpyCH4III ACNGT 2 cut(s) 1298, 1448
HpyCH4IV ACGT 1 cut(s) 1058
HpyF10VI GCNNNNNNNGC 2 cut(s) 367, 1001
HpyF3I CTNAG 4 cut(s) 38, 329, 633, 772
HpySE526I ACGT 1 cut(s) 1058
Hsp92I GRCGYC 1 cut(s) 407
Hsp92II CATG 9 cut(s) 61, 82, 425, 584, 760, 883, 904, 989, 1438
HspAI GCGC 5 cut(s) 200, 578, 701, 729, 869
Kpn2I TCCGGA 1 cut(s) 544
KspAI GTTAAC 1 cut(s) 1444
Kzo9I GATC 2 cut(s) 768, 904
LguI GCTCTTC 1 cut(s) 935
LmnI GCTCC 3 cut(s) 547, 1278, 1481
Lsp1109I GCAGC 1 cut(s) 1381
LweI GCATC 6 cut(s) 618, 822, 887, 991, 1291, 1457
MaeI CTAG 2 cut(s) 1064, 1452
MaeII ACGT 1 cut(s) 1058
MaeIII GTNAC 6 cut(s) 115, 185, 263, 751, 949, 1054
MalI GATC 2 cut(s) 770, 906
MbiI CCGCTC 2 cut(s) 108, 590
MboI GATC 2 cut(s) 768, 904
MboII GAAGA 4 cut(s) 136, 290, 952, 1339
MhlI GDGCHC 2 cut(s) 429, 1113
MluCI AATT 6 cut(s) 384, 596, 873, 958, 1158, 1222
MlyI GAGTC 1 cut(s) 1453
MmeI TCCRAC 1 cut(s) 1188
Mph1103I ATGCAT 3 cut(s) 815, 902, 1006
MroI TCCGGA 1 cut(s) 544
MseI TTAA 4 cut(s) 191, 306, 434, 1443
MslI CAYNNNNRTG 1 cut(s) 990
MspA1I CMGCKG 1 cut(s) 170
MspI CCGG 4 cut(s) 183, 259, 545, 1035
MspR9I CCNGG 4 cut(s) 50, 260, 1248, 1464
Mva1269I GAATGC 2 cut(s) 1004, 1134
MvaI CCWGG 3 cut(s) 50, 1248, 1464
MvnI CGCG 4 cut(s) 200, 370, 729, 731
MwoI GCNNNNNNNGC 2 cut(s) 367, 1001
NciI CCSGG 1 cut(s) 260
NcoI CCATGG 2 cut(s) 756, 985
NdeI CATATG 1 cut(s) 219
NdeII GATC 2 cut(s) 768, 904
NlaIII CATG 9 cut(s) 61, 82, 425, 584, 760, 883, 904, 989, 1438
NlaIV GGNNCC 1 cut(s) 543
NmuCI GTSAC 5 cut(s) 115, 185, 751, 949, 1054
NsbI TGCGCA 1 cut(s) 579
NsiI ATGCAT 3 cut(s) 815, 902, 1006
NspI RCATGY 2 cut(s) 584, 883
PaqCI CACCTGC 1 cut(s) 604
PciI ACATGT 1 cut(s) 879
PciSI GCTCTTC 1 cut(s) 935
PcsI WCGNNNNNNNCGW 2 cut(s) 404, 1014
PctI GAATGC 2 cut(s) 1004, 1134
PfeI GAWTC 4 cut(s) 418, 478, 724, 1146
PflFI GACNNNGTC 2 cut(s) 749, 1052
PfoI TCCNGGA 2 cut(s) 1246, 1462
PkrI GCNGC 3 cut(s) 169, 514, 1396
PleI GAGTC 1 cut(s) 1453
PpsI GAGTC 1 cut(s) 1453
PscI ACATGT 1 cut(s) 879
Psp6I CCWGG 3 cut(s) 48, 1246, 1462
PspEI GGTNACC 1 cut(s) 751
PspGI CCWGG 3 cut(s) 48, 1246, 1462
PspN4I GGNNCC 1 cut(s) 543
PspPI GGNCC 2 cut(s) 61, 654
PsyI GACNNNGTC 2 cut(s) 749, 1052
RsaI GTAC 1 cut(s) 465
RsaNI GTAC 1 cut(s) 464
RseI CAYNNNNRTG 1 cut(s) 990
SapI GCTCTTC 1 cut(s) 935
SaqAI TTAA 4 cut(s) 191, 306, 434, 1443
SatI GCNGC 3 cut(s) 168, 513, 1395
Sau3AI GATC 2 cut(s) 768, 904
Sau96I GGNCC 2 cut(s) 61, 654
SchI GAGTC 1 cut(s) 1453
ScrFI CCNGG 4 cut(s) 50, 260, 1248, 1464
SduI GDGCHC 2 cut(s) 429, 1113
SfaNI GCATC 6 cut(s) 618, 822, 887, 991, 1291, 1457
SfcI CTRYAG 2 cut(s) 5, 1141
SinI GGWCC 1 cut(s) 654
SmiMI CAYNNNNRTG 1 cut(s) 990
SmlI CTYRAG 2 cut(s) 89, 704
SmoI CTYRAG 2 cut(s) 89, 704
Sse9I AATT 6 cut(s) 384, 596, 873, 958, 1158, 1222
SspMI CTAG 2 cut(s) 1064, 1452
StyD4I CCNGG 4 cut(s) 48, 258, 1246, 1462
StyI CCWWGG 2 cut(s) 756, 985
TaaI ACNGT 2 cut(s) 1298, 1448
TaiI ACGT 1 cut(s) 1061
TaqI TCGA 7 cut(s) 398, 528, 692, 907, 962, 1017, 1149
TasI AATT 6 cut(s) 384, 596, 873, 958, 1158, 1222
TatI WGTACW 1 cut(s) 463
TauI GCSGC 2 cut(s) 170, 515
TfiI GAWTC 4 cut(s) 418, 478, 724, 1146
Tru1I TTAA 4 cut(s) 191, 306, 434, 1443
Tru9I TTAA 4 cut(s) 191, 306, 434, 1443
TscAI CASTG 1 cut(s) 769
TseFI GTSAC 5 cut(s) 115, 185, 751, 949, 1054
TseI GCWGC 1 cut(s) 1394
Tsp45I GTSAC 5 cut(s) 115, 185, 751, 949, 1054
TspDTI ATGAA 6 cut(s) 395, 410, 470, 737, 947, 1368
TspGWI ACGGA 1 cut(s) 797
TspRI CASTG 1 cut(s) 769
Tth111I GACNNNGTC 2 cut(s) 749, 1052
VpaK11BI GGWCC 1 cut(s) 654
XapI RAATTY 1 cut(s) 958
XceI RCATGY 2 cut(s) 584, 883
XmiI GTMKAC 1 cut(s) 1101
XspI CTAG 2 cut(s) 1064, 1452
Zsp2I ATGCAT 3 cut(s) 815, 902, 1006
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.