Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0011588

Physical Location & Seq

Genomic Coordinates Forward (+)

3494041 .. 3495518

Gene Structure 1478 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g05030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGTCTTCTGATATAAGGATTCCACCTGAACGGACCCTCTGGTCTTATACTCCATTTACATTTAACGCACCATTGCAAATCTCTGTCTTGTATGTAGATGTCGAAGTAGTGAATATTTCCCGACCACTGGAAGTTGTCACAGCGAGGCGAGTTTTTGATGAGGCTGTGGCTCCTGACGTCGTTTCGTGGTCGGGTTTGGTTATTGCGCATGCGAGAGCGGGGGAATTGGAATTTGCACGGCAGGTGTTTGATGATATGCCTGAGAGGGATGTGGTTTCTTGGACTGCTATGATCTCTGCGTATTCCCAATCAAAGTATTCGAGAGAGGCGCATGATTTGTTTTGGGAGATGAATCGTGAGGGAGTTATGCCCGATGAAGTCACGATGGTGAGTGTAATCTCAGCTTGTGCAGATTCCAGAGATGTGGAAACGGGGATATGCATCCACCAATATATCGATGACATTGGGTTTGCGTGGATGGTTTCACTTTGCAATGCACTGATTGACATGTACGCGAAGTGTGGATGCATGGATCGAGTGTGGCAAGTGTTTGATAAGATGAGCCGGAAGAGCTTAGTCACTTGGAATTCGATGATTTCAGCATATGCAAATCATGGTAATGCCGATGATGCGATTGGTTTGTTTGGGTGCATGACTGCTGCTGGTGTTGCACCGGATGGGGTCACATTTTTAGCCCTTTTAGTTGCGTATACACACAAGGGATTGCATTACGGTTGCATGGTTGATATGTTAGGGAAGGCAGGACGGTTGGAGGAAGCATACAGATTGATTAGTAGTATGCCAATTCTGGGCAACGATGTTGTTTGGGGAACACTGCTTGCAGCTTGTAGAACTTACGGGGATGCTGATATGGGCGAGAGGGTCGTGAATAGGCTGTTAGAGTTGAAACCAGATGAAGGCGGGTACTACATTCTCCGTCGTGATATTTATGTCGCAGCCGGAAGGACAATGGAAGCAAATGCGACGAAGCATAGCATGAAAGTTAACGGTGCTAGTAAGACTCCCGGATACAGCTGGGTGGGAGAATATGGTTTCCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

354

Amino Acids

39.28

Weight (kDa)

5.08

Isoelectric Point (pI)

36.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	89 - 137	2.8e-12	PPR repeat family
PPR	PF01535	92 - 122	2.5e-07	PPR repeat
PPR_2	PF13041	191 - 235	2.1e-09	PPR repeat family
PPR	PF01535	193 - 223	2.8e-08	PPR repeat
E_motif	PF20431	286 - 347	9e-12	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011588)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g48040
malus_domestica	MD09G1054600.v1.1
prunus_persica	Prupe.3G263900_v2.0.a1
pyrus_communis	pycom111g04590 pycom17g04940 pycom17g04960 pycom17g05030
rosa_chinensis	RchiOBHm_Chr2g0167331
rosa_laevigata	RLG00000021709 RLG00000021730
rosa_multiflora	Rmu_co8271097.1_g000001 Rmu_sc0001840.1_g000011 Rmu_sc0014204.1_g000008
rosa_roxburghii	Rroxscaffold_2G00083590
rosa_rugosa	Rorug02G0529600
rosa_samantha	Rh2AG596600 Rh2BG608000 Rh2CG578800 Rh2DG619400
rosa_wichuraiana	Rw2G049650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	232
AasI	GACNNNNNNGTC	1 cut(s)	40
AatII	GACGTC	1 cut(s)	180
Acc16I	TGCGCA	1 cut(s)	207
Acc36I	ACCTGC	1 cut(s)	232
AccBSI	CCGCTC	1 cut(s)	218
AccI	GTMKAC	1 cut(s)	710
AccII	CGCG	1 cut(s)	515
AciI	CCGC	2 cut(s)	218, 921
AclWI	GGATC	1 cut(s)	540
AcsI	RAATTY	2 cut(s)	230, 586
AcyI	GRCGYC	1 cut(s)	177
AfaI	GTAC	2 cut(s)	512, 926
AfiI	CCNNNNNNNGG	3 cut(s)	127, 809, 917
AflIII	ACRYGT	1 cut(s)	507
AgsI	TTSAA	1 cut(s)	907
AleI	CACNNNNGTG	1 cut(s)	386
AluBI	AGCT	4 cut(s)	404, 573, 845, 1035
AluI	AGCT	4 cut(s)	404, 573, 845, 1035
AlwI	GGATC	1 cut(s)	540
ApeKI	GCWGC	3 cut(s)	659, 842, 956
ApoI	RAATTY	2 cut(s)	230, 586
ArsI	GACNNNNNNTTYG	2 cut(s)	452, 484
AspLEI	GCGC	2 cut(s)	208, 331
AspS9I	GGNCC	1 cut(s)	33
AsuC2I	CCSGG	1 cut(s)	1026
AsuHPI	GGTGA	1 cut(s)	400
AvaII	GGWCC	1 cut(s)	33
BbvI	GCAGC	3 cut(s)	646, 854, 968
BccI	CCATC	3 cut(s)	379, 472, 671
BceAI	ACGGC	1 cut(s)	254
BciVI	GTATCC	1 cut(s)	1022
BcnI	CCSGG	1 cut(s)	1026
BfaI	CTAG	1 cut(s)	1014
BfuAI	ACCTGC	1 cut(s)	232
BfuI	GTATCC	1 cut(s)	1022
BisI	GCNGC	3 cut(s)	660, 843, 957
BlsI	GCNGC	3 cut(s)	661, 844, 958
Bme1390I	CCNGG	1 cut(s)	1026
Bme18I	GGWCC	1 cut(s)	33
BmgT120I	GGNCC	1 cut(s)	33
BmiI	GGNNCC	2 cut(s)	35, 171
BmrFI	CCNGG	1 cut(s)	1026
BmsI	GCATC	4 cut(s)	450, 515, 619, 853
BpuMI	CCSGG	1 cut(s)	1026
Bsa29I	ATCGAT	1 cut(s)	456
BsaBI	GATNNNNATC	1 cut(s)	440
BsaHI	GRCGYC	1 cut(s)	177
BsaWI	WCCGGW	1 cut(s)	673
Bsc4I	CCNNNNNNNGG	3 cut(s)	127, 809, 917
Bse1I	ACTGG	1 cut(s)	132
Bse3DI	GCAATG	2 cut(s)	71, 499
Bse8I	GATNNNNATC	1 cut(s)	440
BseCI	ATCGAT	1 cut(s)	456
BseGI	GGATG	6 cut(s)	274, 441, 483, 530, 682, 868
BseJI	GATNNNNATC	1 cut(s)	440
BseLI	CCNNNNNNNGG	3 cut(s)	127, 809, 917
BseMI	GCAATG	2 cut(s)	71, 499
BseMII	CTCAG	2 cut(s)	252, 414
BseNI	ACTGG	1 cut(s)	132
BseXI	GCAGC	3 cut(s)	646, 854, 968
BseYI	CCCAGC	1 cut(s)	1035
BsgI	GTGCAG	1 cut(s)	429
Bsh1236I	CGCG	1 cut(s)	515
BshVI	ATCGAT	1 cut(s)	456
BsiSI	CCGG	4 cut(s)	565, 674, 960, 1026
BslI	CCNNNNNNNGG	3 cut(s)	127, 809, 917
Bsp143I	GATC	2 cut(s)	291, 532
BspACI	CCGC	2 cut(s)	218, 921
BspCNI	CTCAG	2 cut(s)	253, 413
BspDI	ATCGAT	1 cut(s)	456
BspFNI	CGCG	1 cut(s)	515
BspLI	GGNNCC	2 cut(s)	35, 171
BspMI	ACCTGC	1 cut(s)	232
BspPI	GGATC	1 cut(s)	540
BspQI	GCTCTTC	1 cut(s)	563
BsrBI	CCGCTC	1 cut(s)	218
BsrDI	GCAATG	2 cut(s)	71, 499
BsrI	ACTGG	1 cut(s)	132
BssMI	GATC	2 cut(s)	291, 532
BssNAI	GTATAC	1 cut(s)	711
BssNI	GRCGYC	1 cut(s)	177
Bst1107I	GTATAC	1 cut(s)	711
Bst4CI	ACNGT	3 cut(s)	734, 768, 1010
Bst6I	CTCTTC	1 cut(s)	563
BstACI	GRCGYC	1 cut(s)	177
BstC8I	GCNNGC	2 cut(s)	210, 840
BstDEI	CTNAG	3 cut(s)	261, 400, 574
BstF5I	GGATG	6 cut(s)	274, 441, 483, 530, 682, 868
BstFNI	CGCG	1 cut(s)	515
BstHHI	GCGC	2 cut(s)	208, 331
BstKTI	GATC	2 cut(s)	294, 535
BstMBI	GATC	2 cut(s)	291, 532
BstMWI	GCNNNNNNNGC	3 cut(s)	570, 629, 668
BstNSI	RCATGY	2 cut(s)	212, 511
BstSCI	CCNGG	1 cut(s)	1024
BstUI	CGCG	1 cut(s)	515
BstV1I	GCAGC	3 cut(s)	646, 854, 968
BstXI	CCANNNNNNTGG	1 cut(s)	424
BstZ17I	GTATAC	1 cut(s)	711
Bsu15I	ATCGAT	1 cut(s)	456
BsuI	GTATCC	1 cut(s)	1022
BsuTUI	ATCGAT	1 cut(s)	456
BtsCI	GGATG	6 cut(s)	274, 441, 483, 530, 682, 868
BtsI	GCAGTG	1 cut(s)	833
BtsIMutI	CAGTG	3 cut(s)	125, 497, 833
BveI	ACCTGC	1 cut(s)	232
Cac8I	GCNNGC	2 cut(s)	210, 840
CfoI	GCGC	2 cut(s)	208, 331
Cfr13I	GGNCC	1 cut(s)	33
ClaI	ATCGAT	1 cut(s)	456
Csp6I	GTAC	2 cut(s)	511, 925
CviAII	CATG	8 cut(s)	209, 332, 508, 529, 614, 652, 739, 997
CviQI	GTAC	2 cut(s)	511, 925
DdeI	CTNAG	3 cut(s)	261, 400, 574
DpnI	GATC	2 cut(s)	293, 534
DpnII	GATC	2 cut(s)	291, 532
DrdI	GACNNNNNNGTC	1 cut(s)	40
DseDI	GACNNNNNNGTC	1 cut(s)	40
Eam1104I	CTCTTC	1 cut(s)	563
EarI	CTCTTC	1 cut(s)	563
Eco47I	GGWCC	1 cut(s)	33
EcoRI	GAATTC	1 cut(s)	586
EcoT22I	ATGCAT	2 cut(s)	443, 530
FaeI	CATG	8 cut(s)	212, 335, 511, 532, 617, 655, 742, 1000
FatI	CATG	8 cut(s)	208, 331, 507, 528, 613, 651, 738, 996
FauI	CCCGC	2 cut(s)	211, 914
FauNDI	CATATG	1 cut(s)	604
FblI	GTMKAC	1 cut(s)	710
Fnu4HI	GCNGC	3 cut(s)	660, 843, 957
FokI	GGATG	6 cut(s)	281, 428, 490, 537, 689, 875
Fsp4HI	GCNGC	3 cut(s)	660, 843, 957
FspBI	CTAG	1 cut(s)	1014
FspI	TGCGCA	1 cut(s)	207
GlaI	GCGC	2 cut(s)	207, 330
GluI	GCNGC	3 cut(s)	660, 843, 957
GsaI	CCCAGC	1 cut(s)	1039
HapII	CCGG	4 cut(s)	565, 674, 960, 1026
HhaI	GCGC	2 cut(s)	208, 331
Hin1I	GRCGYC	1 cut(s)	177
Hin1II	CATG	8 cut(s)	212, 335, 511, 532, 617, 655, 742, 1000
Hin6I	GCGC	2 cut(s)	206, 329
HinP1I	GCGC	2 cut(s)	206, 329
HincII	GTYRAC	1 cut(s)	1006
HindII	GTYRAC	1 cut(s)	1006
HinfI	GANTC	4 cut(s)	19, 352, 413, 1021
HpaI	GTTAAC	1 cut(s)	1006
HpaII	CCGG	4 cut(s)	565, 674, 960, 1026
HphI	GGTGA	1 cut(s)	400
Hpy166II	GTNNAC	2 cut(s)	711, 1006
Hpy188I	TCNGA	1 cut(s)	10
Hpy188III	TCNNGA	8 cut(s)	120, 173, 321, 356, 382, 417, 886, 941
Hpy8I	GTNNAC	2 cut(s)	711, 1006
Hpy99I	CGWCG	3 cut(s)	182, 942, 988
HpyAV	CCTTC	3 cut(s)	751, 911, 957
HpyCH4III	ACNGT	3 cut(s)	734, 768, 1010
HpyCH4IV	ACGT	1 cut(s)	177
HpyF10VI	GCNNNNNNNGC	3 cut(s)	570, 629, 668
HpyF3I	CTNAG	3 cut(s)	261, 400, 574
HpySE526I	ACGT	1 cut(s)	177
Hsp92I	GRCGYC	1 cut(s)	177
Hsp92II	CATG	8 cut(s)	212, 335, 511, 532, 617, 655, 742, 1000
HspAI	GCGC	2 cut(s)	206, 329
KspAI	GTTAAC	1 cut(s)	1006
Kzo9I	GATC	2 cut(s)	291, 532
LguI	GCTCTTC	1 cut(s)	563
LmnI	GCTCC	1 cut(s)	175
Lsp1109I	GCAGC	3 cut(s)	646, 854, 968
LweI	GCATC	4 cut(s)	450, 515, 619, 853
MaeI	CTAG	1 cut(s)	1014
MaeII	ACGT	1 cut(s)	177
MaeIII	GTNAC	4 cut(s)	136, 379, 577, 682
MalI	GATC	2 cut(s)	293, 534
MbiI	CCGCTC	1 cut(s)	218
MboI	GATC	2 cut(s)	291, 532
MboII	GAAGA	1 cut(s)	580
MluCI	AATT	4 cut(s)	224, 230, 586, 804
MlyI	GAGTC	1 cut(s)	1015
MmeI	TCCRAC	1 cut(s)	750
MnlI	CCTC	8 cut(s)	47, 138, 154, 258, 319, 352, 766, 873
Mph1103I	ATGCAT	2 cut(s)	443, 530
MseI	TTAA	2 cut(s)	63, 1005
MslI	CAYNNNNRTG	2 cut(s)	386, 618
MspA1I	CMGCKG	1 cut(s)	1035
MspI	CCGG	4 cut(s)	565, 674, 960, 1026
MspR9I	CCNGG	1 cut(s)	1026
MvnI	CGCG	1 cut(s)	515
MwoI	GCNNNNNNNGC	3 cut(s)	570, 629, 668
NciI	CCSGG	1 cut(s)	1026
NdeI	CATATG	1 cut(s)	604
NdeII	GATC	2 cut(s)	291, 532
NlaIII	CATG	8 cut(s)	212, 335, 511, 532, 617, 655, 742, 1000
NlaIV	GGNNCC	2 cut(s)	35, 171
NmuCI	GTSAC	4 cut(s)	136, 379, 577, 682
NsbI	TGCGCA	1 cut(s)	207
NsiI	ATGCAT	2 cut(s)	443, 530
NspI	RCATGY	2 cut(s)	212, 511
OliI	CACNNNNGTG	1 cut(s)	386
PaeI	GCATGC	1 cut(s)	212
PaqCI	CACCTGC	1 cut(s)	232
PciI	ACATGT	1 cut(s)	507
PciSI	GCTCTTC	1 cut(s)	563
PfeI	GAWTC	3 cut(s)	19, 352, 413
PfoI	TCCNGGA	1 cut(s)	1024
PkrI	GCNGC	3 cut(s)	661, 844, 958
PleI	GAGTC	1 cut(s)	1015
PpsI	GAGTC	1 cut(s)	1015
PscI	ACATGT	1 cut(s)	507
PspFI	CCCAGC	1 cut(s)	1035
PspN4I	GGNNCC	2 cut(s)	35, 171
PspPI	GGNCC	1 cut(s)	33
PvuII	CAGCTG	1 cut(s)	1035
RsaI	GTAC	2 cut(s)	512, 926
RsaNI	GTAC	2 cut(s)	511, 925
RseI	CAYNNNNRTG	2 cut(s)	386, 618
SapI	GCTCTTC	1 cut(s)	563
SaqAI	TTAA	2 cut(s)	63, 1005
SatI	GCNGC	3 cut(s)	660, 843, 957
Sau3AI	GATC	2 cut(s)	291, 532
Sau96I	GGNCC	1 cut(s)	33
SchI	GAGTC	1 cut(s)	1015
ScrFI	CCNGG	1 cut(s)	1026
SetI	ASST	7 cut(s)	28, 180, 246, 406, 575, 847, 1037
SfaNI	GCATC	4 cut(s)	450, 515, 619, 853
SinI	GGWCC	1 cut(s)	33
SmiMI	CAYNNNNRTG	2 cut(s)	386, 618
SphI	GCATGC	1 cut(s)	212
Sse9I	AATT	4 cut(s)	224, 230, 586, 804
SsiI	CCGC	2 cut(s)	218, 921
SspI	AATATT	1 cut(s)	115
SspMI	CTAG	1 cut(s)	1014
StyD4I	CCNGG	1 cut(s)	1024
TaaI	ACNGT	3 cut(s)	734, 768, 1010
TaiI	ACGT	1 cut(s)	180
TaqI	TCGA	5 cut(s)	102, 320, 456, 535, 590
TasI	AATT	4 cut(s)	224, 230, 586, 804
TfiI	GAWTC	3 cut(s)	19, 352, 413
Tru1I	TTAA	2 cut(s)	63, 1005
Tru9I	TTAA	2 cut(s)	63, 1005
TscAI	CASTG	3 cut(s)	132, 504, 840
TseFI	GTSAC	4 cut(s)	136, 379, 577, 682
TseI	GCWGC	3 cut(s)	659, 842, 956
Tsp45I	GTSAC	4 cut(s)	136, 379, 577, 682
TspDTI	ATGAA	4 cut(s)	365, 390, 930, 1013
TspGWI	ACGGA	3 cut(s)	46, 926, 1046
TspRI	CASTG	3 cut(s)	132, 504, 840
VpaK11BI	GGWCC	1 cut(s)	33
XapI	RAATTY	2 cut(s)	230, 586
XceI	RCATGY	2 cut(s)	212, 511
XmiI	GTMKAC	1 cut(s)	710
XspI	CTAG	1 cut(s)	1014
ZraI	GACGTC	1 cut(s)	178
Zsp2I	ATGCAT	2 cut(s)	443, 530

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.