Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001840.1

Orthogroup ID

OG0011588

Physical Location & Seq

Genomic Coordinates Forward (+)

47430 .. 48893

Gene Structure 1464 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001840.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1464 bp

atgcaacagcaatggcaagcaagcctgagctccaggctcgcttccatggcccagacctgcctctccatgaaacaactcaagcaaatccacgcccgcgcaatcctttcaaatctccacaaccacgccatcgttctcggcaagatgttccgcttcgccgcggtctcaccctccggtgacttaaactatgcccaccatctgttcgatcaaatgccccaaccaactactttcttctacaacctcctcatccggggtcactccaaaagctcgtcgccttggcattcggtgcttctattcaaccagatgagactaaactcaatcgacccagatgagtttaccttcacatttttgctgaaatctcgttcgaggatgaagatgaatatcgaaaatgatgagatacatggggctgtgttgaagtctgggttttccttgcatttgtttgtgcagaattcgttgattcatttgtatgctggaagagggattccaagtgcggctaggagagtgttcgatgaggctgtggctgctgatgttgtgtcgtggtcgggtttggttattgctcatgtgagagccaatgaattggattttgcacggcgggtctttgatgaaatgcctgagagggatgttgtttcgtggaccgctatgatatctgggtattcacaagctaagtattcgagggaagcgcttgggttgttttgggagatgaatcgtgagggagtgagacccgacgaggtcaccatggtgaatgtaatctcagcatgcacggatttaggagatgttcaaaccgggataagcatccaccggtttattgaggagaatgggtttgcgtggatggtttcgctttgcaatgcactgattgatatgtatgcaaagtgtggatgcatggaccgagcatggcaactgtttgatagcatggaccgaaagagcttgattacttggaattctatgatttcagcatgtgcaaaccatggcaatgctgatgatgcatttgggttgtttgagtgtatgcttagtgctggtgttccacctgatggggtcacattcttggcccttttagttgcttatacacacaagggattggtagatgaaggactcagactatttgagagaatgcaaagggagtacagaatcgaggctcgcattgagcattatgggtgcatggcagatatgttaggcaaggcagggcgattggaggaagcatacagattaattagtagtatgccgattccaggcaatgatgttgtttggggaacactgcttgcagcttgcagaacttatggcgatgttgatatgggcgagagggttgtaaagaggctaataaagctgaaaccggatgaaggtgggtactatattctccttcgtgatatttatgttgcagcaggaaggaccgcagaagcaaacgatatgaggcaaacgatgattgataatggtgctagtaagactcctggacgcagttgggttggagcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

487

Amino Acids

54.73

Weight (kDa)

6.57

Isoelectric Point (pI)

42.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011588)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g48040
malus_domestica	MD09G1054600.v1.1
prunus_persica	Prupe.3G263900_v2.0.a1
pyrus_communis	pycom111g04590 pycom17g04940 pycom17g04960 pycom17g05030
rosa_chinensis	RchiOBHm_Chr2g0167331
rosa_laevigata	RLG00000021709 RLG00000021730
rosa_multiflora	Rmu_co8271097.1_g000001 Rmu_sc0001840.1_g000011 Rmu_sc0014204.1_g000008
rosa_roxburghii	Rroxscaffold_2G00083590
rosa_rugosa	Rorug02G0529600
rosa_samantha	Rh2AG596600 Rh2BG608000 Rh2CG578800 Rh2DG619400
rosa_wichuraiana	Rw2G049650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	65
AccB7I	CCANNNNNTGG	1 cut(s)	1025
AccII	CGCG	2 cut(s)	96, 158
AciI	CCGC	8 cut(s)	94, 148, 156, 158, 488, 589, 633, 1383
AcsI	RAATTY	2 cut(s)	445, 934
AfaI	GTAC	2 cut(s)	1118, 1340
AfeI	AGCGCT	1 cut(s)	678
AfiI	CCNNNNNNNGG	4 cut(s)	247, 1025, 1223, 1331
AgeI	ACCGGT	1 cut(s)	795
AgsI	TTSAA	4 cut(s)	108, 295, 412, 776
AjnI	CCWGG	3 cut(s)	32, 1222, 1438
AleI	CACNNNNGTG	1 cut(s)	734
AluBI	AGCT	6 cut(s)	30, 264, 659, 921, 1259, 1318
AluI	AGCT	6 cut(s)	30, 264, 659, 921, 1259, 1318
Alw21I	GWGCWC	1 cut(s)	32
Alw26I	GTCTC	3 cut(s)	166, 298, 709
Aor51HI	AGCGCT	1 cut(s)	678
AoxI	GGCC	2 cut(s)	48, 1041
ApeKI	GCWGC	3 cut(s)	518, 1256, 1370
ApoI	RAATTY	2 cut(s)	445, 934
AseI	ATTAAT	1 cut(s)	1202
AsiGI	ACCGGT	1 cut(s)	795
AspLEI	GCGC	2 cut(s)	98, 679
AspS9I	GGNCC	6 cut(s)	49, 630, 880, 910, 1042, 1380
AsuC2I	CCSGG	2 cut(s)	248, 781
AsuHPI	GGTGA	4 cut(s)	156, 185, 721, 748
AvaII	GGWCC	4 cut(s)	630, 880, 910, 1380
BanII	GRGCYC	1 cut(s)	32
Bbv12I	GWGCWC	1 cut(s)	32
BbvI	GCAGC	3 cut(s)	505, 1268, 1382
BccI	CCATC	4 cut(s)	134, 201, 820, 1019
BceAI	ACGGC	1 cut(s)	602
BciT130I	CCWGG	3 cut(s)	34, 1224, 1440
BcnI	CCSGG	2 cut(s)	248, 781
BcoDI	GTCTC	3 cut(s)	166, 298, 709
BfaI	CTAG	2 cut(s)	492, 1428
BfoI	RGCGCY	1 cut(s)	680
BfuAI	ACCTGC	1 cut(s)	65
BisI	GCNGC	5 cut(s)	156, 489, 519, 1257, 1371
BlsI	GCNGC	5 cut(s)	157, 490, 520, 1258, 1372
Bme1390I	CCNGG	5 cut(s)	34, 248, 781, 1224, 1440
Bme18I	GGWCC	4 cut(s)	630, 880, 910, 1380
BmgT120I	GGNCC	6 cut(s)	49, 630, 880, 910, 1042, 1380
BmrFI	CCNGG	5 cut(s)	34, 248, 781, 1224, 1440
BmsI	GCATC	3 cut(s)	798, 863, 967
BpmI	CTGGAG	1 cut(s)	16
Bpu10I	CCTNAGC	1 cut(s)	26
BpuEI	CTTGAG	1 cut(s)	62
BpuMI	CCSGG	2 cut(s)	248, 781
BsaBI	GATNNNNATC	2 cut(s)	377, 788
BsaI	GGTCTC	2 cut(s)	166, 709
BsaJI	CCNNGG	6 cut(s)	45, 156, 247, 272, 732, 961
BsaWI	WCCGGW	3 cut(s)	170, 795, 1324
BsaXI	ACNNNNNCTCC	2 cut(s)	800, 830
Bsc4I	CCNNNNNNNGG	4 cut(s)	247, 1025, 1223, 1331
Bse118I	RCCGGY	1 cut(s)	795
Bse3DI	GCAATG	4 cut(s)	17, 847, 973, 1234
Bse8I	GATNNNNATC	2 cut(s)	377, 788
BseBI	CCWGG	3 cut(s)	34, 1224, 1440
BseDI	CCNNGG	6 cut(s)	45, 156, 247, 272, 732, 961
BseGI	GGATG	7 cut(s)	243, 372, 622, 789, 831, 878, 1333
BseJI	GATNNNNATC	2 cut(s)	377, 788
BseLI	CCNNNNNNNGG	4 cut(s)	247, 1025, 1223, 1331
BseMI	GCAATG	4 cut(s)	17, 847, 973, 1234
BseMII	CTCAG	4 cut(s)	17, 600, 762, 1102
BseRI	GAGGAG	2 cut(s)	230, 821
BseXI	GCAGC	3 cut(s)	505, 1268, 1382
BsgI	GTGCAG	1 cut(s)	461
Bsh1236I	CGCG	2 cut(s)	96, 158
BshFI	GGCC	2 cut(s)	50, 1043
BshTI	ACCGGT	1 cut(s)	795
BsiHKAI	GWGCWC	1 cut(s)	32
BsiSI	CCGG	5 cut(s)	171, 247, 780, 796, 1325
BslI	CCNNNNNNNGG	4 cut(s)	247, 1025, 1223, 1331
BsmAI	GTCTC	3 cut(s)	166, 298, 709
BsmI	GAATGC	2 cut(s)	277, 1110
BsnI	GGCC	2 cut(s)	50, 1043
Bso31I	GGTCTC	2 cut(s)	166, 709
Bsp1286I	GDGCHC	1 cut(s)	32
Bsp143I	GATC	1 cut(s)	202
Bsp19I	CCATGG	3 cut(s)	45, 732, 961
BspACI	CCGC	8 cut(s)	94, 148, 156, 158, 488, 589, 633, 1383
BspANI	GGCC	2 cut(s)	50, 1043
BspCNI	CTCAG	4 cut(s)	18, 601, 761, 1101
BspFNI	CGCG	2 cut(s)	96, 158
BspMI	ACCTGC	1 cut(s)	65
BspTNI	GGTCTC	2 cut(s)	166, 709
BsrDI	GCAATG	4 cut(s)	17, 847, 973, 1234
BsrFI	RCCGGY	1 cut(s)	795
BssAI	RCCGGY	1 cut(s)	795
BssECI	CCNNGG	6 cut(s)	45, 156, 247, 272, 732, 961
BssMI	GATC	1 cut(s)	202
BssT1I	CCWWGG	4 cut(s)	45, 272, 732, 961
Bst2UI	CCWGG	3 cut(s)	34, 1224, 1440
Bst4CI	ACNGT	1 cut(s)	897
Bst6I	CTCTTC	1 cut(s)	466
BstAPI	GCANNNNNTGC	1 cut(s)	283
BstC8I	GCNNGC	8 cut(s)	18, 22, 39, 94, 754, 1132, 1254, 1261
BstDEI	CTNAG	6 cut(s)	26, 609, 660, 748, 1004, 1088
BstDSI	CCRYGG	4 cut(s)	45, 156, 732, 961
BstEII	GGTNACC	1 cut(s)	727
BstF5I	GGATG	7 cut(s)	243, 372, 622, 789, 831, 878, 1333
BstFNI	CGCG	2 cut(s)	96, 158
BstH2I	RGCGCY	1 cut(s)	680
BstHHI	GCGC	2 cut(s)	98, 679
BstKTI	GATC	1 cut(s)	205
BstMAI	GTCTC	3 cut(s)	166, 298, 709
BstMBI	GATC	1 cut(s)	202
BstMWI	GCNNNNNNNGC	5 cut(s)	47, 283, 518, 977, 1315
BstNI	CCWGG	3 cut(s)	34, 1224, 1440
BstNSI	RCATGY	2 cut(s)	756, 954
BstPI	GGTNACC	1 cut(s)	727
BstSCI	CCNGG	5 cut(s)	32, 246, 779, 1222, 1438
BstUI	CGCG	2 cut(s)	96, 158
BstV1I	GCAGC	3 cut(s)	505, 1268, 1382
BstXI	CCANNNNNNTGG	1 cut(s)	574
BsuRI	GGCC	2 cut(s)	50, 1043
BtgI	CCRYGG	4 cut(s)	45, 156, 732, 961
BtgZI	GCGATG	1 cut(s)	1290
BtsCI	GGATG	7 cut(s)	243, 372, 622, 789, 831, 878, 1333
BtsI	GCAGTG	1 cut(s)	1247
BtsIMutI	CAGTG	2 cut(s)	845, 1247
BveI	ACCTGC	1 cut(s)	65
Cac8I	GCNNGC	8 cut(s)	18, 22, 39, 94, 754, 1132, 1254, 1261
CfoI	GCGC	2 cut(s)	98, 679
Cfr10I	RCCGGY	1 cut(s)	795
Cfr13I	GGNCC	6 cut(s)	49, 630, 880, 910, 1042, 1380
Cfr42I	CCGCGG	1 cut(s)	159
CseI	GACGC	1 cut(s)	1452
Csp6I	GTAC	2 cut(s)	1117, 1339
CspAI	ACCGGT	1 cut(s)	795
CviQI	GTAC	2 cut(s)	1117, 1339
DdeI	CTNAG	6 cut(s)	26, 609, 660, 748, 1004, 1088
DpnI	GATC	1 cut(s)	204
DpnII	GATC	1 cut(s)	202
Eam1104I	CTCTTC	1 cut(s)	466
EarI	CTCTTC	1 cut(s)	466
Ecl136II	GAGCTC	1 cut(s)	30
Eco130I	CCWWGG	4 cut(s)	45, 272, 732, 961
Eco24I	GRGCYC	1 cut(s)	32
Eco31I	GGTCTC	2 cut(s)	166, 709
Eco32I	GATATC	1 cut(s)	642
Eco47I	GGWCC	4 cut(s)	630, 880, 910, 1380
Eco47III	AGCGCT	1 cut(s)	678
Eco53kI	GAGCTC	1 cut(s)	30
Eco91I	GGTNACC	1 cut(s)	727
EcoICRI	GAGCTC	1 cut(s)	30
EcoO65I	GGTNACC	1 cut(s)	727
EcoRI	GAATTC	2 cut(s)	445, 934
EcoRII	CCWGG	3 cut(s)	32, 1222, 1438
EcoRV	GATATC	1 cut(s)	642
EcoT14I	CCWWGG	4 cut(s)	45, 272, 732, 961
EcoT22I	ATGCAT	2 cut(s)	878, 982
EcoT38I	GRGCYC	1 cut(s)	32
ErhI	CCWWGG	4 cut(s)	45, 272, 732, 961
FauI	CCCGC	2 cut(s)	101, 582
Fnu4HI	GCNGC	5 cut(s)	156, 489, 519, 1257, 1371
FokI	GGATG	7 cut(s)	230, 379, 629, 776, 838, 885, 1340
FriOI	GRGCYC	1 cut(s)	32
Fsp4HI	GCNGC	5 cut(s)	156, 489, 519, 1257, 1371
FspBI	CTAG	2 cut(s)	492, 1428
GlaI	GCGC	2 cut(s)	97, 678
GluI	GCNGC	5 cut(s)	156, 489, 519, 1257, 1371
GsuI	CTGGAG	1 cut(s)	16
HaeII	RGCGCY	1 cut(s)	680
HaeIII	GGCC	2 cut(s)	50, 1043
HapII	CCGG	5 cut(s)	171, 247, 780, 796, 1325
HgaI	GACGC	1 cut(s)	1452
HhaI	GCGC	2 cut(s)	98, 679
Hin6I	GCGC	2 cut(s)	96, 677
HinP1I	GCGC	2 cut(s)	96, 677
HinfI	GANTC	7 cut(s)	454, 478, 700, 1086, 1122, 1219, 1435
HpaII	CCGG	5 cut(s)	171, 247, 780, 796, 1325
HphI	GGTGA	4 cut(s)	156, 185, 721, 748
Hpy166II	GTNNAC	2 cut(s)	333, 630
Hpy188I	TCNGA	1 cut(s)	1091
Hpy188III	TCNNGA	2 cut(s)	704, 1355
Hpy8I	GTNNAC	2 cut(s)	333, 630
Hpy99I	CGWCG	2 cut(s)	271, 725
HpyAV	CCTTC	5 cut(s)	346, 1076, 1325, 1361, 1371
HpyCH4III	ACNGT	1 cut(s)	897
HpyF10VI	GCNNNNNNNGC	5 cut(s)	47, 283, 518, 977, 1315
HpyF3I	CTNAG	6 cut(s)	26, 609, 660, 748, 1004, 1088
HspAI	GCGC	2 cut(s)	96, 677
KspI	CCGCGG	1 cut(s)	159
Kzo9I	GATC	1 cut(s)	202
LmnI	GCTCC	2 cut(s)	35, 1457
Lsp1109I	GCAGC	3 cut(s)	505, 1268, 1382
LweI	GCATC	3 cut(s)	798, 863, 967
MaeI	CTAG	2 cut(s)	492, 1428
MaeIII	GTNAC	4 cut(s)	173, 251, 727, 1030
MalI	GATC	1 cut(s)	204
MboI	GATC	1 cut(s)	202
MboII	GAAGA	3 cut(s)	220, 382, 483
MhlI	GDGCHC	1 cut(s)	32
MluCI	AATT	4 cut(s)	445, 572, 934, 1203
MlyI	GAGTC	2 cut(s)	1080, 1429
MmeI	TCCRAC	1 cut(s)	1435
Mph1103I	ATGCAT	2 cut(s)	878, 982
MseI	TTAA	2 cut(s)	179, 1202
MslI	CAYNNNNRTG	3 cut(s)	462, 734, 966
MspA1I	CMGCKG	1 cut(s)	158
MspI	CCGG	5 cut(s)	171, 247, 780, 796, 1325
MspR9I	CCNGG	5 cut(s)	34, 248, 781, 1224, 1440
Mva1269I	GAATGC	2 cut(s)	277, 1110
MvaI	CCWGG	3 cut(s)	34, 1224, 1440
MvnI	CGCG	2 cut(s)	96, 158
MwoI	GCNNNNNNNGC	5 cut(s)	47, 283, 518, 977, 1315
NciI	CCSGG	2 cut(s)	248, 781
NcoI	CCATGG	3 cut(s)	45, 732, 961
NdeII	GATC	1 cut(s)	202
NmeAIII	GCCGAG	1 cut(s)	114
NmuCI	GTSAC	4 cut(s)	173, 251, 727, 1030
NsiI	ATGCAT	2 cut(s)	878, 982
NspI	RCATGY	2 cut(s)	756, 954
OliI	CACNNNNGTG	1 cut(s)	734
PaeI	GCATGC	1 cut(s)	756
PctI	GAATGC	2 cut(s)	277, 1110
PfeI	GAWTC	5 cut(s)	454, 478, 700, 1122, 1219
PflFI	GACNNNGTC	1 cut(s)	725
PflMI	CCANNNNNTGG	1 cut(s)	1025
PfoI	TCCNGGA	1 cut(s)	1438
PinAI	ACCGGT	1 cut(s)	795
PkrI	GCNGC	5 cut(s)	157, 490, 520, 1258, 1372
PleI	GAGTC	2 cut(s)	1080, 1429
PpsI	GAGTC	2 cut(s)	1080, 1429
PshBI	ATTAAT	1 cut(s)	1202
Psp124BI	GAGCTC	1 cut(s)	32
Psp6I	CCWGG	3 cut(s)	32, 1222, 1438
PspEI	GGTNACC	1 cut(s)	727
PspGI	CCWGG	3 cut(s)	32, 1222, 1438
PspPI	GGNCC	6 cut(s)	49, 630, 880, 910, 1042, 1380
PsyI	GACNNNGTC	1 cut(s)	725
RsaI	GTAC	2 cut(s)	1118, 1340
RsaNI	GTAC	2 cut(s)	1117, 1339
RseI	CAYNNNNRTG	3 cut(s)	462, 734, 966
SacI	GAGCTC	1 cut(s)	32
SacII	CCGCGG	1 cut(s)	159
SaqAI	TTAA	2 cut(s)	179, 1202
SatI	GCNGC	5 cut(s)	156, 489, 519, 1257, 1371
Sau3AI	GATC	1 cut(s)	202
Sau96I	GGNCC	6 cut(s)	49, 630, 880, 910, 1042, 1380
SchI	GAGTC	2 cut(s)	1080, 1429
ScrFI	CCNGG	5 cut(s)	34, 248, 781, 1224, 1440
SduI	GDGCHC	1 cut(s)	32
SfaNI	GCATC	3 cut(s)	798, 863, 967
Sfr303I	CCGCGG	1 cut(s)	159
SgrBI	CCGCGG	1 cut(s)	159
SinI	GGWCC	4 cut(s)	630, 880, 910, 1380
SmiMI	CAYNNNNRTG	3 cut(s)	462, 734, 966
SmlI	CTYRAG	1 cut(s)	77
SmoI	CTYRAG	1 cut(s)	77
SphI	GCATGC	1 cut(s)	756
Sse9I	AATT	4 cut(s)	445, 572, 934, 1203
SsiI	CCGC	8 cut(s)	94, 148, 156, 158, 488, 589, 633, 1383
SspMI	CTAG	2 cut(s)	492, 1428
SstI	GAGCTC	1 cut(s)	32
StyD4I	CCNGG	5 cut(s)	32, 246, 779, 1222, 1438
StyI	CCWWGG	4 cut(s)	45, 272, 732, 961
TaaI	ACNGT	1 cut(s)	897
TaqI	TCGA	7 cut(s)	201, 318, 362, 381, 504, 668, 1125
TaqII	GACCGA	2 cut(s)	897, 927
TasI	AATT	4 cut(s)	445, 572, 934, 1203
TatI	WGTACW	1 cut(s)	1116
TauI	GCSGC	2 cut(s)	158, 491
TfiI	GAWTC	5 cut(s)	454, 478, 700, 1122, 1219
Tru1I	TTAA	2 cut(s)	179, 1202
Tru9I	TTAA	2 cut(s)	179, 1202
TscAI	CASTG	2 cut(s)	852, 1254
TseFI	GTSAC	4 cut(s)	173, 251, 727, 1030
TseI	GCWGC	3 cut(s)	518, 1256, 1370
Tsp45I	GTSAC	4 cut(s)	173, 251, 727, 1030
TspDTI	ATGAA	9 cut(s)	83, 383, 389, 446, 585, 615, 713, 1095, 1344
TspGWI	ACGGA	1 cut(s)	773
TspRI	CASTG	2 cut(s)	852, 1254
Tth111I	GACNNNGTC	1 cut(s)	725
Van91I	CCANNNNNTGG	1 cut(s)	1025
VpaK11BI	GGWCC	4 cut(s)	630, 880, 910, 1380
VspI	ATTAAT	1 cut(s)	1202
XapI	RAATTY	2 cut(s)	445, 934
XceI	RCATGY	2 cut(s)	756, 954
XspI	CTAG	2 cut(s)	492, 1428
Zsp2I	ATGCAT	2 cut(s)	878, 982

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.