Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8271097.1

Orthogroup ID

OG0011588

Physical Location & Seq

Genomic Coordinates Forward (+)

71 .. 828

Gene Structure 758 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8271097.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 758 bp

atgcaacagcaatggcaagcaagcctgagctccaggctcgcttccatggcccagacctgcctctccatgaaacaactcaagcaaatccacgcccgcgcaatcctttcaaatctccacaaccacgccatcgttctcggcaagatgttccgcttcgccgcggtctcaccctccggtgacttaaactatgcccaccagctgttcgatcaaatgccccaaccaactactttcttctacaacctcctcatccggggtcactccaaaagctcgtcgccttggcattcggtgcttctattcaaccagatgagactaaactcaatcgacccagatgagtttaccttcacatttttgctgaaatctcgttcgaggatgaagatgaatatcgaaaatgatgagatacatggggctgtgttgaagtctgggttttccttgcatttgtttgtgcagaattcgttgattcatttgtatgctggaagagggattccaagtgcggctaggagagtgttcgatgaggctgtggctgctgatgttgtgtcgtggtcgggtttggttattgctcatgtgagagccaatgaattggattttgcacggcgggtctttgatgaaatgcctgagagggatgttgtttcgtggaccgctatgatatctgggtattcacaagctaagtattcgagggaagcgcttgggttgttttgggagatgaatcgtgagggagtgagacccgacgaggtcaccatggtgagtgtaatctcagcatgcac

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

253

Amino Acids

28.67

Weight (kDa)

8.95

Isoelectric Point (pI)

50.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011588)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g48040
malus_domestica	MD09G1054600.v1.1
prunus_persica	Prupe.3G263900_v2.0.a1
pyrus_communis	pycom111g04590 pycom17g04940 pycom17g04960 pycom17g05030
rosa_chinensis	RchiOBHm_Chr2g0167331
rosa_laevigata	RLG00000021709 RLG00000021730
rosa_multiflora	Rmu_co8271097.1_g000001 Rmu_sc0001840.1_g000011 Rmu_sc0014204.1_g000008
rosa_roxburghii	Rroxscaffold_2G00083590
rosa_rugosa	Rorug02G0529600
rosa_samantha	Rh2AG596600 Rh2BG608000 Rh2CG578800 Rh2DG619400
rosa_wichuraiana	Rw2G049650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	65
AccII	CGCG	2 cut(s)	96, 158
AciI	CCGC	7 cut(s)	94, 148, 156, 158, 488, 589, 633
AcsI	RAATTY	1 cut(s)	445
AfeI	AGCGCT	1 cut(s)	678
AfiI	CCNNNNNNNGG	1 cut(s)	247
AgsI	TTSAA	3 cut(s)	108, 295, 412
AjnI	CCWGG	1 cut(s)	32
AleI	CACNNNNGTG	1 cut(s)	734
AluBI	AGCT	4 cut(s)	30, 196, 264, 659
AluI	AGCT	4 cut(s)	30, 196, 264, 659
Alw21I	GWGCWC	1 cut(s)	32
Alw26I	GTCTC	3 cut(s)	166, 298, 709
Aor51HI	AGCGCT	1 cut(s)	678
AoxI	GGCC	1 cut(s)	48
ApeKI	GCWGC	1 cut(s)	518
ApoI	RAATTY	1 cut(s)	445
AspLEI	GCGC	2 cut(s)	98, 679
AspS9I	GGNCC	2 cut(s)	49, 630
AsuC2I	CCSGG	1 cut(s)	248
AsuHPI	GGTGA	4 cut(s)	156, 185, 721, 748
AvaII	GGWCC	1 cut(s)	630
BanII	GRGCYC	1 cut(s)	32
Bbv12I	GWGCWC	1 cut(s)	32
BbvI	GCAGC	1 cut(s)	505
BccI	CCATC	1 cut(s)	134
BceAI	ACGGC	1 cut(s)	602
BciT130I	CCWGG	1 cut(s)	34
BcnI	CCSGG	1 cut(s)	248
BcoDI	GTCTC	3 cut(s)	166, 298, 709
BfaI	CTAG	1 cut(s)	492
BfoI	RGCGCY	1 cut(s)	680
BfuAI	ACCTGC	1 cut(s)	65
BisI	GCNGC	3 cut(s)	156, 489, 519
BlsI	GCNGC	3 cut(s)	157, 490, 520
Bme1390I	CCNGG	2 cut(s)	34, 248
Bme18I	GGWCC	1 cut(s)	630
BmgT120I	GGNCC	2 cut(s)	49, 630
BmrFI	CCNGG	2 cut(s)	34, 248
BpmI	CTGGAG	1 cut(s)	16
Bpu10I	CCTNAGC	1 cut(s)	26
BpuEI	CTTGAG	1 cut(s)	62
BpuMI	CCSGG	1 cut(s)	248
BsaBI	GATNNNNATC	1 cut(s)	377
BsaI	GGTCTC	2 cut(s)	166, 709
BsaJI	CCNNGG	5 cut(s)	45, 156, 247, 272, 732
BsaWI	WCCGGW	1 cut(s)	170
Bsc4I	CCNNNNNNNGG	1 cut(s)	247
Bse3DI	GCAATG	1 cut(s)	17
Bse8I	GATNNNNATC	1 cut(s)	377
BseBI	CCWGG	1 cut(s)	34
BseDI	CCNNGG	5 cut(s)	45, 156, 247, 272, 732
BseGI	GGATG	3 cut(s)	243, 372, 622
BseJI	GATNNNNATC	1 cut(s)	377
BseLI	CCNNNNNNNGG	1 cut(s)	247
BseMI	GCAATG	1 cut(s)	17
BseMII	CTCAG	2 cut(s)	17, 600
BseRI	GAGGAG	1 cut(s)	230
BseXI	GCAGC	1 cut(s)	505
BsgI	GTGCAG	1 cut(s)	461
Bsh1236I	CGCG	2 cut(s)	96, 158
BshFI	GGCC	1 cut(s)	50
BsiHKAI	GWGCWC	1 cut(s)	32
BsiSI	CCGG	2 cut(s)	171, 247
BslI	CCNNNNNNNGG	1 cut(s)	247
BsmAI	GTCTC	3 cut(s)	166, 298, 709
BsmI	GAATGC	1 cut(s)	277
BsnI	GGCC	1 cut(s)	50
Bso31I	GGTCTC	2 cut(s)	166, 709
Bsp1286I	GDGCHC	1 cut(s)	32
Bsp143I	GATC	1 cut(s)	202
Bsp19I	CCATGG	2 cut(s)	45, 732
BspACI	CCGC	7 cut(s)	94, 148, 156, 158, 488, 589, 633
BspANI	GGCC	1 cut(s)	50
BspCNI	CTCAG	2 cut(s)	18, 601
BspFNI	CGCG	2 cut(s)	96, 158
BspMI	ACCTGC	1 cut(s)	65
BspTNI	GGTCTC	2 cut(s)	166, 709
BsrDI	GCAATG	1 cut(s)	17
BssECI	CCNNGG	5 cut(s)	45, 156, 247, 272, 732
BssMI	GATC	1 cut(s)	202
BssT1I	CCWWGG	3 cut(s)	45, 272, 732
Bst2UI	CCWGG	1 cut(s)	34
Bst6I	CTCTTC	1 cut(s)	466
BstAPI	GCANNNNNTGC	1 cut(s)	283
BstC8I	GCNNGC	5 cut(s)	18, 22, 39, 94, 754
BstDEI	CTNAG	4 cut(s)	26, 609, 660, 748
BstDSI	CCRYGG	3 cut(s)	45, 156, 732
BstEII	GGTNACC	1 cut(s)	727
BstF5I	GGATG	3 cut(s)	243, 372, 622
BstFNI	CGCG	2 cut(s)	96, 158
BstH2I	RGCGCY	1 cut(s)	680
BstHHI	GCGC	2 cut(s)	98, 679
BstKTI	GATC	1 cut(s)	205
BstMAI	GTCTC	3 cut(s)	166, 298, 709
BstMBI	GATC	1 cut(s)	202
BstMWI	GCNNNNNNNGC	3 cut(s)	47, 283, 518
BstNI	CCWGG	1 cut(s)	34
BstNSI	RCATGY	1 cut(s)	756
BstPI	GGTNACC	1 cut(s)	727
BstSCI	CCNGG	2 cut(s)	32, 246
BstUI	CGCG	2 cut(s)	96, 158
BstV1I	GCAGC	1 cut(s)	505
BstXI	CCANNNNNNTGG	1 cut(s)	574
BsuRI	GGCC	1 cut(s)	50
BtgI	CCRYGG	3 cut(s)	45, 156, 732
BtsCI	GGATG	3 cut(s)	243, 372, 622
BveI	ACCTGC	1 cut(s)	65
Cac8I	GCNNGC	5 cut(s)	18, 22, 39, 94, 754
CfoI	GCGC	2 cut(s)	98, 679
Cfr13I	GGNCC	2 cut(s)	49, 630
Cfr42I	CCGCGG	1 cut(s)	159
CviAII	CATG	6 cut(s)	46, 67, 398, 557, 733, 753
DdeI	CTNAG	4 cut(s)	26, 609, 660, 748
DpnI	GATC	1 cut(s)	204
DpnII	GATC	1 cut(s)	202
Eam1104I	CTCTTC	1 cut(s)	466
EarI	CTCTTC	1 cut(s)	466
Ecl136II	GAGCTC	1 cut(s)	30
Eco130I	CCWWGG	3 cut(s)	45, 272, 732
Eco24I	GRGCYC	1 cut(s)	32
Eco31I	GGTCTC	2 cut(s)	166, 709
Eco32I	GATATC	1 cut(s)	642
Eco47I	GGWCC	1 cut(s)	630
Eco47III	AGCGCT	1 cut(s)	678
Eco53kI	GAGCTC	1 cut(s)	30
Eco91I	GGTNACC	1 cut(s)	727
EcoICRI	GAGCTC	1 cut(s)	30
EcoO65I	GGTNACC	1 cut(s)	727
EcoRI	GAATTC	1 cut(s)	445
EcoRII	CCWGG	1 cut(s)	32
EcoRV	GATATC	1 cut(s)	642
EcoT14I	CCWWGG	3 cut(s)	45, 272, 732
EcoT38I	GRGCYC	1 cut(s)	32
ErhI	CCWWGG	3 cut(s)	45, 272, 732
FaeI	CATG	6 cut(s)	49, 70, 401, 560, 736, 756
FaiI	YATR	9 cut(s)	47, 68, 186, 399, 465, 558, 638, 734, 754
FatI	CATG	6 cut(s)	45, 66, 397, 556, 732, 752
FauI	CCCGC	2 cut(s)	101, 582
Fnu4HI	GCNGC	3 cut(s)	156, 489, 519
FokI	GGATG	3 cut(s)	230, 379, 629
FriOI	GRGCYC	1 cut(s)	32
Fsp4HI	GCNGC	3 cut(s)	156, 489, 519
FspBI	CTAG	1 cut(s)	492
GlaI	GCGC	2 cut(s)	97, 678
GluI	GCNGC	3 cut(s)	156, 489, 519
GsuI	CTGGAG	1 cut(s)	16
HaeII	RGCGCY	1 cut(s)	680
HaeIII	GGCC	1 cut(s)	50
HapII	CCGG	2 cut(s)	171, 247
HhaI	GCGC	2 cut(s)	98, 679
Hin1II	CATG	6 cut(s)	49, 70, 401, 560, 736, 756
Hin6I	GCGC	2 cut(s)	96, 677
HinP1I	GCGC	2 cut(s)	96, 677
HinfI	GANTC	3 cut(s)	454, 478, 700
HpaII	CCGG	2 cut(s)	171, 247
HphI	GGTGA	4 cut(s)	156, 185, 721, 748
Hpy166II	GTNNAC	2 cut(s)	333, 630
Hpy188III	TCNNGA	1 cut(s)	704
Hpy8I	GTNNAC	2 cut(s)	333, 630
Hpy99I	CGWCG	2 cut(s)	271, 725
HpyAV	CCTTC	1 cut(s)	346
HpyCH4V	TGCA	5 cut(s)	4, 430, 442, 584, 756
HpyF10VI	GCNNNNNNNGC	3 cut(s)	47, 283, 518
HpyF3I	CTNAG	4 cut(s)	26, 609, 660, 748
Hsp92II	CATG	6 cut(s)	49, 70, 401, 560, 736, 756
HspAI	GCGC	2 cut(s)	96, 677
KspI	CCGCGG	1 cut(s)	159
Kzo9I	GATC	1 cut(s)	202
LmnI	GCTCC	1 cut(s)	35
Lsp1109I	GCAGC	1 cut(s)	505
MaeI	CTAG	1 cut(s)	492
MaeIII	GTNAC	3 cut(s)	173, 251, 727
MalI	GATC	1 cut(s)	204
MboI	GATC	1 cut(s)	202
MboII	GAAGA	3 cut(s)	220, 382, 483
MhlI	GDGCHC	1 cut(s)	32
MluCI	AATT	2 cut(s)	445, 572
MseI	TTAA	1 cut(s)	179
MslI	CAYNNNNRTG	2 cut(s)	462, 734
MspA1I	CMGCKG	2 cut(s)	158, 196
MspI	CCGG	2 cut(s)	171, 247
MspR9I	CCNGG	2 cut(s)	34, 248
Mva1269I	GAATGC	1 cut(s)	277
MvaI	CCWGG	1 cut(s)	34
MvnI	CGCG	2 cut(s)	96, 158
MwoI	GCNNNNNNNGC	3 cut(s)	47, 283, 518
NciI	CCSGG	1 cut(s)	248
NcoI	CCATGG	2 cut(s)	45, 732
NdeII	GATC	1 cut(s)	202
NlaIII	CATG	6 cut(s)	49, 70, 401, 560, 736, 756
NmeAIII	GCCGAG	1 cut(s)	114
NmuCI	GTSAC	3 cut(s)	173, 251, 727
NspI	RCATGY	1 cut(s)	756
OliI	CACNNNNGTG	1 cut(s)	734
PaeI	GCATGC	1 cut(s)	756
PctI	GAATGC	1 cut(s)	277
PfeI	GAWTC	3 cut(s)	454, 478, 700
PflFI	GACNNNGTC	1 cut(s)	725
PkrI	GCNGC	3 cut(s)	157, 490, 520
Psp124BI	GAGCTC	1 cut(s)	32
Psp6I	CCWGG	1 cut(s)	32
PspEI	GGTNACC	1 cut(s)	727
PspGI	CCWGG	1 cut(s)	32
PspPI	GGNCC	2 cut(s)	49, 630
PsyI	GACNNNGTC	1 cut(s)	725
PvuII	CAGCTG	1 cut(s)	196
RseI	CAYNNNNRTG	2 cut(s)	462, 734
SacI	GAGCTC	1 cut(s)	32
SacII	CCGCGG	1 cut(s)	159
SaqAI	TTAA	1 cut(s)	179
SatI	GCNGC	3 cut(s)	156, 489, 519
Sau3AI	GATC	1 cut(s)	202
Sau96I	GGNCC	2 cut(s)	49, 630
ScrFI	CCNGG	2 cut(s)	34, 248
SduI	GDGCHC	1 cut(s)	32
SetI	ASST	8 cut(s)	32, 59, 198, 240, 266, 338, 661, 729
Sfr303I	CCGCGG	1 cut(s)	159
SgrBI	CCGCGG	1 cut(s)	159
SinI	GGWCC	1 cut(s)	630
SmiMI	CAYNNNNRTG	2 cut(s)	462, 734
SmlI	CTYRAG	1 cut(s)	77
SmoI	CTYRAG	1 cut(s)	77
SphI	GCATGC	1 cut(s)	756
Sse9I	AATT	2 cut(s)	445, 572
SsiI	CCGC	7 cut(s)	94, 148, 156, 158, 488, 589, 633
SspMI	CTAG	1 cut(s)	492
SstI	GAGCTC	1 cut(s)	32
StyD4I	CCNGG	2 cut(s)	32, 246
StyI	CCWWGG	3 cut(s)	45, 272, 732
TaqI	TCGA	6 cut(s)	201, 318, 362, 381, 504, 668
TasI	AATT	2 cut(s)	445, 572
TauI	GCSGC	2 cut(s)	158, 491
TfiI	GAWTC	3 cut(s)	454, 478, 700
Tru1I	TTAA	1 cut(s)	179
Tru9I	TTAA	1 cut(s)	179
TseFI	GTSAC	3 cut(s)	173, 251, 727
TseI	GCWGC	1 cut(s)	518
Tsp45I	GTSAC	3 cut(s)	173, 251, 727
TspDTI	ATGAA	7 cut(s)	83, 383, 389, 446, 585, 615, 713
Tth111I	GACNNNGTC	1 cut(s)	725
VpaK11BI	GGWCC	1 cut(s)	630
XapI	RAATTY	1 cut(s)	445
XceI	RCATGY	1 cut(s)	756
XspI	CTAG	1 cut(s)	492

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.