Rh2AG596600

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0011588
Physical Location & Seq
Reverse (-)
82689876 .. 82690284
409 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG596600.1

Sequence Viewer

Length: 366 bp
ATGGCCCAGACCTGCCTCTCCATGAAACAACTCAAGCAAATCCACGCCCGCGCAATCCTTTCAAATCTCCACAACCACACCATCGTCCTCGGCAAGATGTTCCGCTTCGCCGCGGTCTCACCCTCCGGTGACTTAAACTATGCCCACCAACTGTTCGATCAAATGCCCCAACCAACTACTTTCTTCTACAACCTCCTCATCCGGGGTCACTCCAAAAGCTCGTCGCCTTGGCATTCGGTGCTTCTATTCAACCAGATGAGACTAAACTCTATCGACCCAGATGAGTTTACCTTCACATTTTTGCTGAAATCTCGTTCGAGGATGAAGATGAATATCGAAAATGATGAGATACATGGAATTCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

121

Amino Acids

14.05

Weight (kDa)

9.8

Isoelectric Point (pI)

64.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 58 - 103 3.9e-08 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 20
AccII CGCG 2 cut(s) 51, 113
AciI CCGC 4 cut(s) 49, 103, 111, 113
AcsI RAATTY 1 cut(s) 357
AfiI CCNNNNNNNGG 1 cut(s) 202
AgsI TTSAA 2 cut(s) 63, 250
AluBI AGCT 1 cut(s) 219
AluI AGCT 1 cut(s) 219
Alw26I GTCTC 2 cut(s) 121, 253
AoxI GGCC 1 cut(s) 3
ApoI RAATTY 1 cut(s) 357
AspLEI GCGC 1 cut(s) 53
AspS9I GGNCC 1 cut(s) 4
AsuC2I CCSGG 1 cut(s) 203
AsuHPI GGTGA 2 cut(s) 111, 140
BccI CCATC 1 cut(s) 89
BcnI CCSGG 1 cut(s) 203
BcoDI GTCTC 2 cut(s) 121, 253
BfuAI ACCTGC 1 cut(s) 20
BisI GCNGC 1 cut(s) 111
BlsI GCNGC 1 cut(s) 112
Bme1390I CCNGG 1 cut(s) 203
BmgT120I GGNCC 1 cut(s) 4
BmrFI CCNGG 1 cut(s) 203
BpuEI CTTGAG 1 cut(s) 17
BpuMI CCSGG 1 cut(s) 203
BsaBI GATNNNNATC 1 cut(s) 332
BsaI GGTCTC 1 cut(s) 121
BsaJI CCNNGG 4 cut(s) 88, 111, 202, 227
BsaWI WCCGGW 1 cut(s) 125
Bsc4I CCNNNNNNNGG 1 cut(s) 202
Bse8I GATNNNNATC 1 cut(s) 332
BseDI CCNNGG 4 cut(s) 88, 111, 202, 227
BseGI GGATG 2 cut(s) 198, 327
BseJI GATNNNNATC 1 cut(s) 332
BseLI CCNNNNNNNGG 1 cut(s) 202
BseRI GAGGAG 1 cut(s) 185
Bsh1236I CGCG 2 cut(s) 51, 113
BshFI GGCC 1 cut(s) 5
BsiSI CCGG 2 cut(s) 126, 202
BslI CCNNNNNNNGG 1 cut(s) 202
BsmAI GTCTC 2 cut(s) 121, 253
BsmI GAATGC 1 cut(s) 232
BsnI GGCC 1 cut(s) 5
Bso31I GGTCTC 1 cut(s) 121
Bsp143I GATC 1 cut(s) 157
BspACI CCGC 4 cut(s) 49, 103, 111, 113
BspANI GGCC 1 cut(s) 5
BspFNI CGCG 2 cut(s) 51, 113
BspMI ACCTGC 1 cut(s) 20
BspTNI GGTCTC 1 cut(s) 121
BssECI CCNNGG 4 cut(s) 88, 111, 202, 227
BssMI GATC 1 cut(s) 157
BssT1I CCWWGG 1 cut(s) 227
Bst4CI ACNGT 1 cut(s) 153
BstAPI GCANNNNNTGC 1 cut(s) 238
BstC8I GCNNGC 1 cut(s) 49
BstDSI CCRYGG 1 cut(s) 111
BstF5I GGATG 2 cut(s) 198, 327
BstFNI CGCG 2 cut(s) 51, 113
BstHHI GCGC 1 cut(s) 53
BstKTI GATC 1 cut(s) 160
BstMAI GTCTC 2 cut(s) 121, 253
BstMBI GATC 1 cut(s) 157
BstMWI GCNNNNNNNGC 1 cut(s) 238
BstSCI CCNGG 1 cut(s) 201
BstUI CGCG 2 cut(s) 51, 113
BsuRI GGCC 1 cut(s) 5
BtgI CCRYGG 1 cut(s) 111
BtsCI GGATG 2 cut(s) 198, 327
BveI ACCTGC 1 cut(s) 20
Cac8I GCNNGC 1 cut(s) 49
CfoI GCGC 1 cut(s) 53
Cfr13I GGNCC 1 cut(s) 4
Cfr42I CCGCGG 1 cut(s) 114
CviAII CATG 2 cut(s) 22, 353
CviJI RGCY 2 cut(s) 5, 219
CviKI_1 RGCY 2 cut(s) 5, 219
DpnI GATC 1 cut(s) 159
DpnII GATC 1 cut(s) 157
Eco130I CCWWGG 1 cut(s) 227
Eco31I GGTCTC 1 cut(s) 121
EcoRI GAATTC 1 cut(s) 357
EcoT14I CCWWGG 1 cut(s) 227
ErhI CCWWGG 1 cut(s) 227
FaeI CATG 2 cut(s) 25, 356
FaiI YATR 3 cut(s) 23, 141, 354
FatI CATG 2 cut(s) 21, 352
FauI CCCGC 1 cut(s) 56
Fnu4HI GCNGC 1 cut(s) 111
FokI GGATG 2 cut(s) 185, 334
Fsp4HI GCNGC 1 cut(s) 111
GlaI GCGC 1 cut(s) 52
GluI GCNGC 1 cut(s) 111
HaeIII GGCC 1 cut(s) 5
HapII CCGG 2 cut(s) 126, 202
HhaI GCGC 1 cut(s) 53
Hin1II CATG 2 cut(s) 25, 356
Hin6I GCGC 1 cut(s) 51
HinP1I GCGC 1 cut(s) 51
HpaII CCGG 2 cut(s) 126, 202
HphI GGTGA 2 cut(s) 111, 140
Hpy166II GTNNAC 1 cut(s) 288
Hpy8I GTNNAC 1 cut(s) 288
Hpy99I CGWCG 1 cut(s) 226
HpyAV CCTTC 1 cut(s) 301
HpyCH4III ACNGT 1 cut(s) 153
HpyF10VI GCNNNNNNNGC 1 cut(s) 238
Hsp92II CATG 2 cut(s) 25, 356
HspAI GCGC 1 cut(s) 51
KspI CCGCGG 1 cut(s) 114
Kzo9I GATC 1 cut(s) 157
LpnPI CCDG 6 cut(s) 20, 25, 139, 215, 266, 291
MaeIII GTNAC 2 cut(s) 128, 206
MalI GATC 1 cut(s) 159
MboI GATC 1 cut(s) 157
MboII GAAGA 2 cut(s) 175, 337
MluCI AATT 1 cut(s) 357
MnlI CCTC 6 cut(s) 26, 98, 133, 203, 206, 312
MseI TTAA 1 cut(s) 134
MspA1I CMGCKG 1 cut(s) 113
MspI CCGG 2 cut(s) 126, 202
MspR9I CCNGG 1 cut(s) 203
Mva1269I GAATGC 1 cut(s) 232
MvnI CGCG 2 cut(s) 51, 113
MwoI GCNNNNNNNGC 1 cut(s) 238
NciI CCSGG 1 cut(s) 203
NdeII GATC 1 cut(s) 157
NlaIII CATG 2 cut(s) 25, 356
NmeAIII GCCGAG 1 cut(s) 69
NmuCI GTSAC 2 cut(s) 128, 206
PctI GAATGC 1 cut(s) 232
PkrI GCNGC 1 cut(s) 112
PspPI GGNCC 1 cut(s) 4
SacII CCGCGG 1 cut(s) 114
SaqAI TTAA 1 cut(s) 134
SatI GCNGC 1 cut(s) 111
Sau3AI GATC 1 cut(s) 157
Sau96I GGNCC 1 cut(s) 4
ScrFI CCNGG 1 cut(s) 203
SetI ASST 4 cut(s) 14, 195, 221, 293
Sfr303I CCGCGG 1 cut(s) 114
SgrBI CCGCGG 1 cut(s) 114
SmlI CTYRAG 1 cut(s) 32
SmoI CTYRAG 1 cut(s) 32
Sse9I AATT 1 cut(s) 357
SsiI CCGC 4 cut(s) 49, 103, 111, 113
StyD4I CCNGG 1 cut(s) 201
StyI CCWWGG 1 cut(s) 227
TaaI ACNGT 1 cut(s) 153
TaqI TCGA 4 cut(s) 156, 273, 317, 336
TasI AATT 1 cut(s) 357
TauI GCSGC 1 cut(s) 113
Tru1I TTAA 1 cut(s) 134
Tru9I TTAA 1 cut(s) 134
TseFI GTSAC 2 cut(s) 128, 206
Tsp45I GTSAC 2 cut(s) 128, 206
TspDTI ATGAA 3 cut(s) 38, 338, 344
XapI RAATTY 1 cut(s) 357
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.