Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_6g48040 |
| malus_domestica | MD09G1054600.v1.1 |
| prunus_persica | Prupe.3G263900_v2.0.a1 |
| pyrus_communis | pycom111g04590 pycom17g04940 pycom17g04960 pycom17g05030 |
| rosa_chinensis | RchiOBHm_Chr2g0167331 |
| rosa_laevigata | RLG00000021709 RLG00000021730 |
| rosa_multiflora | Rmu_co8271097.1_g000001 Rmu_sc0001840.1_g000011 Rmu_sc0014204.1_g000008 |
| rosa_roxburghii | Rroxscaffold_2G00083590 |
| rosa_rugosa | Rorug02G0529600 |
| rosa_samantha | Rh2AG596600 Rh2BG608000 Rh2CG578800 Rh2DG619400 |
| rosa_wichuraiana | Rw2G049650 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 529 |
| AatII | GACGTC | 1 cut(s) | 477 |
| Acc16I | TGCGCA | 1 cut(s) | 504 |
| Acc36I | ACCTGC | 1 cut(s) | 529 |
| AccBSI | CCGCTC | 1 cut(s) | 515 |
| AccI | GTMKAC | 1 cut(s) | 330 |
| AccII | CGCG | 2 cut(s) | 110, 812 |
| AccIII | TCCGGA | 1 cut(s) | 713 |
| AciI | CCGC | 8 cut(s) | 5, 110, 160, 168, 205, 437, 515, 707 |
| AcoI | YGGCCR | 2 cut(s) | 103, 1233 |
| AcsI | RAATTY | 1 cut(s) | 883 |
| AcuI | CTGAAG | 1 cut(s) | 28 |
| AcyI | GRCGYC | 1 cut(s) | 474 |
| AfaI | GTAC | 1 cut(s) | 809 |
| AfeI | AGCGCT | 1 cut(s) | 627 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 11, 258, 259, 1100 |
| AflII | CTTAAG | 1 cut(s) | 190 |
| AflIII | ACRYGT | 1 cut(s) | 804 |
| AgeI | ACCGGT | 1 cut(s) | 430 |
| AgsI | TTSAA | 2 cut(s) | 307, 1198 |
| AjnI | CCWGG | 2 cut(s) | 10, 48 |
| AleI | CACNNNNGTG | 2 cut(s) | 356, 683 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 59, 91 |
| AluBI | AGCT | 7 cut(s) | 42, 195, 276, 701, 870, 1136, 1311 |
| AluI | AGCT | 7 cut(s) | 42, 195, 276, 701, 870, 1136, 1311 |
| Alw26I | GTCTC | 1 cut(s) | 285 |
| Ama87I | CYCGRG | 1 cut(s) | 1099 |
| Aor13HI | TCCGGA | 1 cut(s) | 713 |
| Aor51HI | AGCGCT | 1 cut(s) | 627 |
| AoxI | GGCC | 4 cut(s) | 51, 60, 103, 1233 |
| ApeKI | GCWGC | 4 cut(s) | 7, 16, 956, 1308 |
| ApoI | RAATTY | 1 cut(s) | 883 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 914, 946 |
| AsiGI | ACCGGT | 1 cut(s) | 430 |
| AspLEI | GCGC | 3 cut(s) | 505, 628, 796 |
| AspS9I | GGNCC | 1 cut(s) | 61 |
| AsuC2I | CCSGG | 4 cut(s) | 260, 1100, 1101, 1302 |
| AsuHPI | GGTGA | 4 cut(s) | 194, 197, 451, 697 |
| AvaI | CYCGRG | 1 cut(s) | 1099 |
| BbvI | GCAGC | 3 cut(s) | 28, 943, 1320 |
| BccI | CCATC | 6 cut(s) | 146, 179, 676, 769, 968, 1255 |
| BceAI | ACGGC | 4 cut(s) | 118, 355, 551, 1248 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 597, 631 |
| BciT130I | CCWGG | 2 cut(s) | 12, 50 |
| BciVI | GTATCC | 1 cut(s) | 420 |
| BcnI | CCSGG | 4 cut(s) | 260, 1100, 1101, 1302 |
| BcoDI | GTCTC | 1 cut(s) | 285 |
| BfaI | CTAG | 1 cut(s) | 1290 |
| BfmI | CTRYAG | 1 cut(s) | 994 |
| BfoI | RGCGCY | 1 cut(s) | 629 |
| BfrI | CTTAAG | 1 cut(s) | 190 |
| BfuAI | ACCTGC | 1 cut(s) | 529 |
| BfuI | GTATCC | 1 cut(s) | 420 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 59 |
| BisI | GCNGC | 7 cut(s) | 5, 8, 17, 168, 708, 957, 1309 |
| BlsI | GCNGC | 7 cut(s) | 6, 9, 18, 169, 709, 958, 1310 |
| Bme1390I | CCNGG | 6 cut(s) | 12, 50, 260, 1100, 1101, 1302 |
| BmeT110I | CYCGRG | 1 cut(s) | 1099 |
| BmgT120I | GGNCC | 1 cut(s) | 61 |
| BmrFI | CCNGG | 6 cut(s) | 12, 50, 260, 1100, 1101, 1302 |
| BmsI | GCATC | 9 cut(s) | 379, 543, 654, 747, 812, 916, 1144, 1276, 1295 |
| BpmI | CTGGAG | 1 cut(s) | 110 |
| BpuEI | CTTGAG | 1 cut(s) | 74 |
| BpuMI | CCSGG | 4 cut(s) | 260, 1100, 1101, 1302 |
| BsaHI | GRCGYC | 1 cut(s) | 474 |
| BsaJI | CCNNGG | 4 cut(s) | 11, 259, 910, 1099 |
| BsaWI | WCCGGW | 4 cut(s) | 182, 430, 713, 970 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 59, 89, 821, 851 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 11, 258, 259, 1100 |
| Bse118I | RCCGGY | 1 cut(s) | 430 |
| Bse3DI | GCAATG | 2 cut(s) | 796, 922 |
| BseAI | TCCGGA | 1 cut(s) | 713 |
| BseBI | CCWGG | 2 cut(s) | 12, 50 |
| BseDI | CCNNGG | 4 cut(s) | 11, 259, 910, 1099 |
| BseGI | GGATG | 8 cut(s) | 255, 571, 738, 780, 827, 979, 1159, 1310 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 11, 258, 259, 1100 |
| BseMI | GCAATG | 2 cut(s) | 796, 922 |
| BseMII | CTCAG | 3 cut(s) | 29, 549, 711 |
| BseX3I | CGGCCG | 1 cut(s) | 1233 |
| BseXI | GCAGC | 3 cut(s) | 28, 943, 1320 |
| BseYI | CCCAGC | 1 cut(s) | 1311 |
| Bsh1236I | CGCG | 2 cut(s) | 110, 812 |
| Bsh1285I | CGRYCG | 2 cut(s) | 114, 1236 |
| BshFI | GGCC | 4 cut(s) | 53, 62, 105, 1235 |
| BshTI | ACCGGT | 1 cut(s) | 430 |
| BsiEI | CGRYCG | 2 cut(s) | 114, 1236 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1099 |
| BsiSI | CCGG | 9 cut(s) | 183, 259, 431, 714, 862, 971, 1100, 1236, 1302 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 11, 258, 259, 1100 |
| BsmAI | GTCTC | 1 cut(s) | 285 |
| BsmBI | CGTCTC | 1 cut(s) | 285 |
| BsnI | GGCC | 4 cut(s) | 53, 62, 105, 1235 |
| BsoBI | CYCGRG | 1 cut(s) | 1099 |
| Bsp13I | TCCGGA | 1 cut(s) | 713 |
| Bsp143I | GATC | 2 cut(s) | 214, 588 |
| Bsp19I | CCATGG | 1 cut(s) | 910 |
| BspACI | CCGC | 8 cut(s) | 5, 110, 160, 168, 205, 437, 515, 707 |
| BspANI | GGCC | 4 cut(s) | 53, 62, 105, 1235 |
| BspCNI | CTCAG | 3 cut(s) | 30, 550, 710 |
| BspEI | TCCGGA | 1 cut(s) | 713 |
| BspFNI | CGCG | 2 cut(s) | 110, 812 |
| BspHI | TCATGA | 1 cut(s) | 469 |
| BspMI | ACCTGC | 1 cut(s) | 529 |
| BspQI | GCTCTTC | 1 cut(s) | 860 |
| BspTI | CTTAAG | 1 cut(s) | 190 |
| BsrBI | CCGCTC | 1 cut(s) | 515 |
| BsrDI | GCAATG | 2 cut(s) | 796, 922 |
| BsrFI | RCCGGY | 1 cut(s) | 430 |
| BssAI | RCCGGY | 1 cut(s) | 430 |
| BssECI | CCNNGG | 4 cut(s) | 11, 259, 910, 1099 |
| BssMI | GATC | 2 cut(s) | 214, 588 |
| BssNI | GRCGYC | 1 cut(s) | 474 |
| BssT1I | CCWWGG | 1 cut(s) | 910 |
| Bst2UI | CCWGG | 2 cut(s) | 12, 50 |
| Bst4CI | ACNGT | 2 cut(s) | 1025, 1059 |
| Bst6I | CTCTTC | 1 cut(s) | 860 |
| BstACI | GRCGYC | 1 cut(s) | 474 |
| BstAFI | CTTAAG | 1 cut(s) | 190 |
| BstC8I | GCNNGC | 3 cut(s) | 30, 834, 1138 |
| BstDEI | CTNAG | 3 cut(s) | 38, 558, 697 |
| BstDSI | CCRYGG | 1 cut(s) | 910 |
| BstF5I | GGATG | 8 cut(s) | 255, 571, 738, 780, 827, 979, 1159, 1310 |
| BstFNI | CGCG | 2 cut(s) | 110, 812 |
| BstH2I | RGCGCY | 1 cut(s) | 629 |
| BstHHI | GCGC | 3 cut(s) | 505, 628, 796 |
| BstKTI | GATC | 2 cut(s) | 217, 591 |
| BstMAI | GTCTC | 1 cut(s) | 285 |
| BstMBI | GATC | 2 cut(s) | 214, 588 |
| BstMCI | CGRYCG | 2 cut(s) | 114, 1236 |
| BstNI | CCWGG | 2 cut(s) | 12, 50 |
| BstNSI | RCATGY | 3 cut(s) | 509, 808, 903 |
| BstSCI | CCNGG | 6 cut(s) | 10, 48, 258, 1098, 1099, 1300 |
| BstSFI | CTRYAG | 1 cut(s) | 994 |
| BstUI | CGCG | 2 cut(s) | 110, 812 |
| BstV1I | GCAGC | 3 cut(s) | 28, 943, 1320 |
| BstZI | CGGCCG | 1 cut(s) | 1233 |
| BsuI | GTATCC | 1 cut(s) | 420 |
| BsuRI | GGCC | 4 cut(s) | 53, 62, 105, 1235 |
| BtgI | CCRYGG | 1 cut(s) | 910 |
| BtgZI | GCGATG | 1 cut(s) | 1274 |
| BtsCI | GGATG | 8 cut(s) | 255, 571, 738, 780, 827, 979, 1159, 1310 |
| BtsI | GCAGTG | 2 cut(s) | 468, 1124 |
| BtsIMutI | CAGTG | 2 cut(s) | 468, 1124 |
| BveI | ACCTGC | 1 cut(s) | 529 |
| Cac8I | GCNNGC | 3 cut(s) | 30, 834, 1138 |
| CciI | TCATGA | 1 cut(s) | 469 |
| CfoI | GCGC | 3 cut(s) | 505, 628, 796 |
| Cfr10I | RCCGGY | 1 cut(s) | 430 |
| Cfr13I | GGNCC | 1 cut(s) | 61 |
| Cfr9I | CCCGGG | 1 cut(s) | 1099 |
| CseI | GACGC | 2 cut(s) | 316, 1278 |
| Csp6I | GTAC | 1 cut(s) | 808 |
| CspAI | ACCGGT | 1 cut(s) | 430 |
| CviQI | GTAC | 1 cut(s) | 808 |
| DdeI | CTNAG | 3 cut(s) | 38, 558, 697 |
| DpnI | GATC | 2 cut(s) | 216, 590 |
| DpnII | GATC | 2 cut(s) | 214, 588 |
| EaeI | YGGCCR | 2 cut(s) | 103, 1233 |
| EagI | CGGCCG | 1 cut(s) | 1233 |
| Eam1104I | CTCTTC | 1 cut(s) | 860 |
| EarI | CTCTTC | 1 cut(s) | 860 |
| EclXI | CGGCCG | 1 cut(s) | 1233 |
| Eco130I | CCWWGG | 1 cut(s) | 910 |
| Eco47III | AGCGCT | 1 cut(s) | 627 |
| Eco52I | CGGCCG | 1 cut(s) | 1233 |
| Eco57I | CTGAAG | 1 cut(s) | 28 |
| Eco88I | CYCGRG | 1 cut(s) | 1099 |
| EcoRI | GAATTC | 1 cut(s) | 883 |
| EcoRII | CCWGG | 2 cut(s) | 10, 48 |
| EcoT14I | CCWWGG | 1 cut(s) | 910 |
| EcoT22I | ATGCAT | 2 cut(s) | 740, 827 |
| ErhI | CCWWGG | 1 cut(s) | 910 |
| Esp3I | CGTCTC | 1 cut(s) | 285 |
| FauI | CCCGC | 1 cut(s) | 508 |
| FblI | GTMKAC | 1 cut(s) | 330 |
| Fnu4HI | GCNGC | 7 cut(s) | 5, 8, 17, 168, 708, 957, 1309 |
| FokI | GGATG | 8 cut(s) | 242, 578, 725, 787, 834, 986, 1166, 1317 |
| Fsp4HI | GCNGC | 7 cut(s) | 5, 8, 17, 168, 708, 957, 1309 |
| FspBI | CTAG | 1 cut(s) | 1290 |
| FspI | TGCGCA | 1 cut(s) | 504 |
| GlaI | GCGC | 3 cut(s) | 504, 627, 795 |
| GluI | GCNGC | 7 cut(s) | 5, 8, 17, 168, 708, 957, 1309 |
| GsaI | CCCAGC | 1 cut(s) | 1315 |
| GsuI | CTGGAG | 1 cut(s) | 110 |
| HaeII | RGCGCY | 1 cut(s) | 629 |
| HaeIII | GGCC | 4 cut(s) | 53, 62, 105, 1235 |
| HapII | CCGG | 9 cut(s) | 183, 259, 431, 714, 862, 971, 1100, 1236, 1302 |
| HgaI | GACGC | 2 cut(s) | 316, 1278 |
| HhaI | GCGC | 3 cut(s) | 505, 628, 796 |
| Hin1I | GRCGYC | 1 cut(s) | 474 |
| Hin6I | GCGC | 3 cut(s) | 503, 626, 794 |
| HinP1I | GCGC | 3 cut(s) | 503, 626, 794 |
| HincII | GTYRAC | 2 cut(s) | 331, 1282 |
| HindII | GTYRAC | 2 cut(s) | 331, 1282 |
| HinfI | GANTC | 4 cut(s) | 403, 649, 999, 1297 |
| HpaI | GTTAAC | 1 cut(s) | 1282 |
| HpaII | CCGG | 9 cut(s) | 183, 259, 431, 714, 862, 971, 1100, 1236, 1302 |
| HphI | GGTGA | 4 cut(s) | 194, 197, 451, 697 |
| Hpy166II | GTNNAC | 3 cut(s) | 331, 345, 1282 |
| Hpy188III | TCNNGA | 8 cut(s) | 375, 470, 618, 653, 679, 714, 1177, 1217 |
| Hpy8I | GTNNAC | 3 cut(s) | 331, 345, 1282 |
| Hpy99I | CGWCG | 5 cut(s) | 289, 332, 479, 926, 1272 |
| HpyAV | CCTTC | 4 cut(s) | 358, 1042, 1223, 1233 |
| HpyCH4III | ACNGT | 2 cut(s) | 1025, 1059 |
| HpyCH4IV | ACGT | 2 cut(s) | 353, 474 |
| HpyF3I | CTNAG | 3 cut(s) | 38, 558, 697 |
| HpySE526I | ACGT | 2 cut(s) | 353, 474 |
| Hsp92I | GRCGYC | 1 cut(s) | 474 |
| HspAI | GCGC | 3 cut(s) | 503, 626, 794 |
| Kpn2I | TCCGGA | 1 cut(s) | 713 |
| KspAI | GTTAAC | 1 cut(s) | 1282 |
| Kzo9I | GATC | 2 cut(s) | 214, 588 |
| LguI | GCTCTTC | 1 cut(s) | 860 |
| LmnI | GCTCC | 2 cut(s) | 829, 1319 |
| Lsp1109I | GCAGC | 3 cut(s) | 28, 943, 1320 |
| LweI | GCATC | 9 cut(s) | 379, 543, 654, 747, 812, 916, 1144, 1276, 1295 |
| MaeI | CTAG | 1 cut(s) | 1290 |
| MaeII | ACGT | 2 cut(s) | 353, 474 |
| MaeIII | GTNAC | 5 cut(s) | 115, 185, 676, 874, 1228 |
| MalI | GATC | 2 cut(s) | 216, 590 |
| MbiI | CCGCTC | 1 cut(s) | 515 |
| MboI | GATC | 2 cut(s) | 214, 588 |
| MboII | GAAGA | 2 cut(s) | 232, 877 |
| MluCI | AATT | 4 cut(s) | 384, 521, 883, 1011 |
| MlyI | GAGTC | 1 cut(s) | 1291 |
| MmeI | TCCRAC | 1 cut(s) | 1041 |
| Mph1103I | ATGCAT | 2 cut(s) | 740, 827 |
| MroI | TCCGGA | 1 cut(s) | 713 |
| MseI | TTAA | 2 cut(s) | 191, 1281 |
| MslI | CAYNNNNRTG | 4 cut(s) | 356, 411, 683, 915 |
| MspA1I | CMGCKG | 2 cut(s) | 7, 1311 |
| MspCI | CTTAAG | 1 cut(s) | 190 |
| MspI | CCGG | 9 cut(s) | 183, 259, 431, 714, 862, 971, 1100, 1236, 1302 |
| MspR9I | CCNGG | 6 cut(s) | 12, 50, 260, 1100, 1101, 1302 |
| MvaI | CCWGG | 2 cut(s) | 12, 50 |
| MvnI | CGCG | 2 cut(s) | 110, 812 |
| NciI | CCSGG | 4 cut(s) | 260, 1100, 1101, 1302 |
| NcoI | CCATGG | 1 cut(s) | 910 |
| NdeII | GATC | 2 cut(s) | 214, 588 |
| NmuCI | GTSAC | 5 cut(s) | 115, 185, 676, 874, 1228 |
| NsbI | TGCGCA | 1 cut(s) | 504 |
| NsiI | ATGCAT | 2 cut(s) | 740, 827 |
| NspI | RCATGY | 3 cut(s) | 509, 808, 903 |
| OliI | CACNNNNGTG | 2 cut(s) | 356, 683 |
| PagI | TCATGA | 1 cut(s) | 469 |
| PaqCI | CACCTGC | 1 cut(s) | 529 |
| PciI | ACATGT | 1 cut(s) | 804 |
| PciSI | GCTCTTC | 1 cut(s) | 860 |
| PfeI | GAWTC | 3 cut(s) | 403, 649, 999 |
| PfoI | TCCNGGA | 1 cut(s) | 1300 |
| PinAI | ACCGGT | 1 cut(s) | 430 |
| PkrI | GCNGC | 7 cut(s) | 6, 9, 18, 169, 709, 958, 1310 |
| PleI | GAGTC | 1 cut(s) | 1291 |
| PpsI | GAGTC | 1 cut(s) | 1291 |
| PscI | ACATGT | 1 cut(s) | 804 |
| Psp6I | CCWGG | 2 cut(s) | 10, 48 |
| PspFI | CCCAGC | 1 cut(s) | 1311 |
| PspGI | CCWGG | 2 cut(s) | 10, 48 |
| PspPI | GGNCC | 1 cut(s) | 61 |
| PvuII | CAGCTG | 1 cut(s) | 1311 |
| RsaI | GTAC | 1 cut(s) | 809 |
| RsaNI | GTAC | 1 cut(s) | 808 |
| RseI | CAYNNNNRTG | 4 cut(s) | 356, 411, 683, 915 |
| SalI | GTCGAC | 1 cut(s) | 329 |
| SapI | GCTCTTC | 1 cut(s) | 860 |
| SaqAI | TTAA | 2 cut(s) | 191, 1281 |
| SatI | GCNGC | 7 cut(s) | 5, 8, 17, 168, 708, 957, 1309 |
| Sau3AI | GATC | 2 cut(s) | 214, 588 |
| Sau96I | GGNCC | 1 cut(s) | 61 |
| SchI | GAGTC | 1 cut(s) | 1291 |
| ScrFI | CCNGG | 6 cut(s) | 12, 50, 260, 1100, 1101, 1302 |
| SfaNI | GCATC | 9 cut(s) | 379, 543, 654, 747, 812, 916, 1144, 1276, 1295 |
| SfcI | CTRYAG | 1 cut(s) | 994 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 59 |
| SmaI | CCCGGG | 1 cut(s) | 1101 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 356, 411, 683, 915 |
| SmlI | CTYRAG | 2 cut(s) | 89, 190 |
| SmoI | CTYRAG | 2 cut(s) | 89, 190 |
| Sse9I | AATT | 4 cut(s) | 384, 521, 883, 1011 |
| SsiI | CCGC | 8 cut(s) | 5, 110, 160, 168, 205, 437, 515, 707 |
| SspMI | CTAG | 1 cut(s) | 1290 |
| StyD4I | CCNGG | 6 cut(s) | 10, 48, 258, 1098, 1099, 1300 |
| StyI | CCWWGG | 1 cut(s) | 910 |
| TaaI | ACNGT | 2 cut(s) | 1025, 1059 |
| TaiI | ACGT | 2 cut(s) | 356, 477 |
| TaqI | TCGA | 6 cut(s) | 213, 330, 453, 617, 887, 1002 |
| TasI | AATT | 4 cut(s) | 384, 521, 883, 1011 |
| TauI | GCSGC | 3 cut(s) | 7, 170, 710 |
| TfiI | GAWTC | 3 cut(s) | 403, 649, 999 |
| Tru1I | TTAA | 2 cut(s) | 191, 1281 |
| Tru9I | TTAA | 2 cut(s) | 191, 1281 |
| TscAI | CASTG | 2 cut(s) | 468, 1131 |
| TseFI | GTSAC | 5 cut(s) | 115, 185, 676, 874, 1228 |
| TseI | GCWGC | 4 cut(s) | 7, 16, 956, 1308 |
| Tsp45I | GTSAC | 5 cut(s) | 115, 185, 676, 874, 1228 |
| TspDTI | ATGAA | 5 cut(s) | 395, 471, 662, 687, 1289 |
| TspGWI | ACGGA | 2 cut(s) | 273, 1089 |
| TspMI | CCCGGG | 1 cut(s) | 1099 |
| TspRI | CASTG | 2 cut(s) | 468, 1131 |
| Vha464I | CTTAAG | 1 cut(s) | 190 |
| XapI | RAATTY | 1 cut(s) | 883 |
| XceI | RCATGY | 3 cut(s) | 509, 808, 903 |
| XmaI | CCCGGG | 1 cut(s) | 1099 |
| XmiI | GTMKAC | 1 cut(s) | 330 |
| XspI | CTAG | 1 cut(s) | 1290 |
| ZraI | GACGTC | 1 cut(s) | 475 |
| Zsp2I | ATGCAT | 2 cut(s) | 740, 827 |