Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0007871

Physical Location & Seq

Genomic Coordinates Reverse (-)

37885256 .. 37887197

Gene Structure 1942 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g51011.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGTTGCCTATGGAACCAGCAAAGAAGCTGTCTTTCGTTCGGTGTATTCAAGATGGGGATTTGGTTATTGTGTATGAGAGATATGATAACATGAAGGCTGTGAAAGTGTGTGAGGGTTCTGTGCTTGAGAATCGATTCGGTGTGTTTAAGCATTCGGATTGGATAGGGAAGCAATTTGGGTCCAAGGTTTTCAGCAGCAAGGGTGGATTTGTTTACCTGTTGGCTCCAACTCCCGAGCTTTGGACTTTGGTTCTGAGCCACAGGACTCAGATTCTCTACATTGCTGATATTAGCTTTGTGATCATGTTCTTGGAGATTGTTCCAGGGTGTGTGGTTCTTGAGTCGGGGACTGGGAGTGGGTCTTTGACCACGTCGCTTGCAAGGGCTGTTGCTCCTAAGGGACATGTCTATACATTTGATTTCCATGAGCAAAGGGCGGCCTCAGCTAGGGAGGACTTTGAAAAGACGGGGATAAGTAACATGGTCACAGTAGGAGTTAGAGATATTCAGGGTGAAGGTTTTCCAGATGAGTTTTCTGGGAGGGCAGATTCTGTCTTCCTGGACCTTCCCCAACCCTGGCTAGCCATACCTTCAGTTGAGAAAATGTTAAAACCAGATGGGGTAGTATGCTCCTTTTCCCCGTGCATTGAGCAGGTGCAACGTTCATCAGAGACTTTGAGATCAAAGTTTACAGATATAAGGACATTTGAGATACTCCTTCGCACATATGAAGTTCGAGAAGGGAAAACGGATGGCTTCCAGGTTGAGGAAAGCGGTTCTGTTGGATCTTTACCATGTAAGAGGCGGCAGCTATCAAGTGAAGGAAGTAATGAGCAGGAAACTACAAGTGCTCCCGTAGTCATGGCTAGGCCGAGTAGTGAGGCCAAAGGCCACACGGGCTATTTGACATTTGCAAGACTCAAATGCCTCTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0008174 GO:0008757 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0016740 GO:0016741 GO:0031515 GO:0032259 GO:0032991 GO:0034641 GO:0034708 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0043527 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0061953 GO:0071704 GO:0080009 GO:0090304 GO:0140098 GO:1901360 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GCD14

Protein Analysis

312

Amino Acids

34.43

Weight (kDa)

6.03

Isoelectric Point (pI)

38.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GCD14	PF08704	69 - 306	1.4e-98	tRNA methyltransferase complex GCD14 subunit
PCMT	PF01135	98 - 164	4.1e-06	Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
Methyltransf_31	PF13847	108 - 225	4.4e-11	Methyltransferase domain
Methyltransf_25	PF13649	112 - 207	1.9e-06	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007871)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14600
fragaria_vesca	FvH4_6g51011 FvH4_6g51011 FvH4_6g51011
malus_domestica	MD09G1029500.v1.1 MD17G1031500.v1.1
prunus_persica	Prupe.3G287900_v2.0.a1
pyrus_communis	pycom111g02350 pycom17g02900
rosa_chinensis	RchiOBHm_Chr2g0172551
rosa_laevigata	RLG00000002839 RLG00000016014 RLG00000021671 RLG00000022115
rosa_multiflora	Rmu_sc0000912.1_g000006
rosa_roxburghii	Rroxscaffold_2G00079770
rosa_rugosa	Rorug02G0559800
rosa_samantha	Rh2AG635900 Rh2BG649300 Rh2CG616100 Rh2DG663700 Rh3AG202500 Rh3DG228000
rosa_wichuraiana	Rw2G052610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	643
Acc36I	ACCTGC	1 cut(s)	643
AciI	CCGC	3 cut(s)	437, 774, 805
AclI	AACGTT	1 cut(s)	661
AclWI	GGATC	1 cut(s)	793
AcuI	CTGAAG	1 cut(s)	576
AfiI	CCNNNNNNNGG	4 cut(s)	240, 447, 576, 766
AflIII	ACRYGT	1 cut(s)	403
AgsI	TTSAA	2 cut(s)	50, 461
AjiI	CACGTC	1 cut(s)	372
AjnI	CCWGG	4 cut(s)	322, 558, 575, 759
AluBI	AGCT	5 cut(s)	28, 238, 294, 446, 811
AluI	AGCT	5 cut(s)	28, 238, 294, 446, 811
Alw21I	GWGCWC	1 cut(s)	853
Alw26I	GTCTC	1 cut(s)	665
AlwI	GGATC	1 cut(s)	793
AlwNI	CAGNNNCTG	1 cut(s)	551
Ama87I	CYCGRG	1 cut(s)	233
AoxI	GGCC	4 cut(s)	438, 869, 882, 889
ApeKI	GCWGC	2 cut(s)	195, 808
ArsI	GACNNNNNNTTYG	2 cut(s)	14, 46
Asp700I	GAANNNNTTC	2 cut(s)	134, 519
AspS9I	GGNCC	2 cut(s)	180, 562
AsuHPI	GGTGA	1 cut(s)	524
AsuNHI	GCTAGC	1 cut(s)	580
AvaI	CYCGRG	1 cut(s)	233
AvaII	GGWCC	2 cut(s)	180, 562
AxyI	CCTNAGG	1 cut(s)	396
BbsI	GAAGAC	1 cut(s)	547
Bbv12I	GWGCWC	1 cut(s)	853
BbvCI	CCTCAGC	1 cut(s)	442
BbvI	GCAGC	2 cut(s)	207, 820
BccI	CCATC	3 cut(s)	47, 611, 746
BciT130I	CCWGG	4 cut(s)	324, 560, 577, 761
BclI	TGATCA	1 cut(s)	300
BcoDI	GTCTC	1 cut(s)	665
BfaI	CTAG	3 cut(s)	447, 581, 867
BfuAI	ACCTGC	1 cut(s)	643
BglI	GCCNNNNNGGC	1 cut(s)	897
BisI	GCNGC	4 cut(s)	196, 438, 806, 809
BlsI	GCNGC	4 cut(s)	197, 439, 807, 810
Bme1390I	CCNGG	4 cut(s)	324, 560, 577, 761
Bme18I	GGWCC	2 cut(s)	180, 562
BmeT110I	CYCGRG	1 cut(s)	233
BmgBI	CACGTC	1 cut(s)	372
BmgT120I	GGNCC	2 cut(s)	180, 562
BmiI	GGNNCC	3 cut(s)	15, 181, 225
BmrFI	CCNGG	4 cut(s)	324, 560, 577, 761
BmrI	ACTGGG	1 cut(s)	360
BmtI	GCTAGC	1 cut(s)	584
BmuI	ACTGGG	1 cut(s)	360
BpiI	GAAGAC	1 cut(s)	547
Bpu10I	CCTNAGC	1 cut(s)	442
BpuEI	CTTGAG	2 cut(s)	146, 359
Bsa29I	ATCGAT	1 cut(s)	133
BsaJI	CCNNGG	3 cut(s)	183, 323, 575
BsaXI	ACNNNNNCTCC	2 cut(s)	835, 865
Bsc4I	CCNNNNNNNGG	4 cut(s)	240, 447, 576, 766
Bse1I	ACTGG	1 cut(s)	355
Bse21I	CCTNAGG	1 cut(s)	396
Bse3DI	GCAATG	1 cut(s)	279
BseBI	CCWGG	4 cut(s)	324, 560, 577, 761
BseCI	ATCGAT	1 cut(s)	133
BseDI	CCNNGG	3 cut(s)	183, 323, 575
BseGI	GGATG	1 cut(s)	757
BseLI	CCNNNNNNNGG	4 cut(s)	240, 447, 576, 766
BseMI	GCAATG	1 cut(s)	279
BseMII	CTCAG	3 cut(s)	245, 281, 456
BseNI	ACTGG	1 cut(s)	355
BseXI	GCAGC	2 cut(s)	207, 820
BshFI	GGCC	4 cut(s)	440, 871, 884, 891
BshVI	ATCGAT	1 cut(s)	133
BsiHKAI	GWGCWC	1 cut(s)	853
BsiHKCI	CYCGRG	1 cut(s)	233
BslFI	GGGAC	2 cut(s)	361, 414
BslI	CCNNNNNNNGG	4 cut(s)	240, 447, 576, 766
BsmAI	GTCTC	1 cut(s)	665
BsmFI	GGGAC	2 cut(s)	361, 414
BsmI	GAATGC	1 cut(s)	151
BsnI	GGCC	4 cut(s)	440, 871, 884, 891
BsoBI	CYCGRG	1 cut(s)	233
Bsp1286I	GDGCHC	1 cut(s)	853
Bsp143I	GATC	3 cut(s)	300, 680, 785
BspACI	CCGC	3 cut(s)	437, 774, 805
BspANI	GGCC	4 cut(s)	440, 871, 884, 891
BspCNI	CTCAG	3 cut(s)	246, 280, 455
BspDI	ATCGAT	1 cut(s)	133
BspLI	GGNNCC	3 cut(s)	15, 181, 225
BspMI	ACCTGC	1 cut(s)	643
BspOI	GCTAGC	1 cut(s)	584
BspPI	GGATC	1 cut(s)	793
BsrDI	GCAATG	1 cut(s)	279
BsrI	ACTGG	1 cut(s)	355
BssECI	CCNNGG	3 cut(s)	183, 323, 575
BssMI	GATC	3 cut(s)	300, 680, 785
BssT1I	CCWWGG	1 cut(s)	183
Bst2UI	CCWGG	4 cut(s)	324, 560, 577, 761
Bst4CI	ACNGT	1 cut(s)	490
BstC8I	GCNNGC	2 cut(s)	378, 582
BstDEI	CTNAG	4 cut(s)	254, 267, 396, 442
BstENI	CCTNNNNNAGG	1 cut(s)	445
BstF5I	GGATG	1 cut(s)	757
BstKTI	GATC	3 cut(s)	303, 683, 788
BstMAI	GTCTC	1 cut(s)	665
BstMBI	GATC	3 cut(s)	300, 680, 785
BstMWI	GCNNNNNNNGC	2 cut(s)	443, 897
BstNI	CCWGG	4 cut(s)	324, 560, 577, 761
BstNSI	RCATGY	1 cut(s)	407
BstSCI	CCNGG	4 cut(s)	322, 558, 575, 759
BstV1I	GCAGC	2 cut(s)	207, 820
BstV2I	GAAGAC	1 cut(s)	547
BstX2I	RGATCY	1 cut(s)	785
BstYI	RGATCY	1 cut(s)	785
Bsu15I	ATCGAT	1 cut(s)	133
Bsu36I	CCTNAGG	1 cut(s)	396
BsuRI	GGCC	4 cut(s)	440, 871, 884, 891
BsuTUI	ATCGAT	1 cut(s)	133
BtrI	CACGTC	1 cut(s)	372
BtsCI	GGATG	1 cut(s)	757
BveI	ACCTGC	1 cut(s)	643
Cac8I	GCNNGC	2 cut(s)	378, 582
CaiI	CAGNNNCTG	1 cut(s)	551
Cfr13I	GGNCC	2 cut(s)	180, 562
ClaI	ATCGAT	1 cut(s)	133
CspCI	CAANNNNNGTGG	2 cut(s)	358, 393
CviAII	CATG	7 cut(s)	91, 304, 404, 425, 481, 795, 862
DdeI	CTNAG	4 cut(s)	254, 267, 396, 442
DpnI	GATC	3 cut(s)	302, 682, 787
DpnII	GATC	3 cut(s)	300, 680, 785
Eco130I	CCWWGG	1 cut(s)	183
Eco47I	GGWCC	2 cut(s)	180, 562
Eco57I	CTGAAG	1 cut(s)	576
Eco81I	CCTNAGG	1 cut(s)	396
Eco88I	CYCGRG	1 cut(s)	233
EcoNI	CCTNNNNNAGG	1 cut(s)	445
EcoRII	CCWGG	4 cut(s)	322, 558, 575, 759
EcoT14I	CCWWGG	1 cut(s)	183
ErhI	CCWWGG	1 cut(s)	183
FaeI	CATG	7 cut(s)	94, 307, 407, 428, 484, 798, 865
FaqI	GGGAC	2 cut(s)	361, 414
FatI	CATG	7 cut(s)	90, 303, 403, 424, 480, 794, 861
FauNDI	CATATG	1 cut(s)	727
FbaI	TGATCA	1 cut(s)	300
Fnu4HI	GCNGC	4 cut(s)	196, 438, 806, 809
FokI	GGATG	1 cut(s)	764
Fsp4HI	GCNGC	4 cut(s)	196, 438, 806, 809
FspBI	CTAG	3 cut(s)	447, 581, 867
GluI	GCNGC	4 cut(s)	196, 438, 806, 809
HaeIII	GGCC	4 cut(s)	440, 871, 884, 891
Hin1II	CATG	7 cut(s)	94, 307, 407, 428, 484, 798, 865
HinfI	GANTC	7 cut(s)	130, 135, 265, 271, 341, 548, 918
HphI	GGTGA	1 cut(s)	524
Hpy166II	GTNNAC	2 cut(s)	214, 690
Hpy188I	TCNGA	4 cut(s)	157, 255, 270, 670
Hpy188III	TCNNGA	5 cut(s)	50, 233, 338, 524, 737
Hpy8I	GTNNAC	2 cut(s)	214, 690
Hpy99I	CGWCG	1 cut(s)	376
HpyAV	CCTTC	7 cut(s)	88, 509, 575, 600, 728, 734, 815
HpyCH4III	ACNGT	1 cut(s)	490
HpyCH4IV	ACGT	2 cut(s)	371, 661
HpyCH4V	TGCA	4 cut(s)	380, 645, 658, 914
HpyF10VI	GCNNNNNNNGC	2 cut(s)	443, 897
HpyF3I	CTNAG	4 cut(s)	254, 267, 396, 442
HpySE526I	ACGT	2 cut(s)	371, 661
Hsp92II	CATG	7 cut(s)	94, 307, 407, 428, 484, 798, 865
Ksp22I	TGATCA	1 cut(s)	300
Kzo9I	GATC	3 cut(s)	300, 680, 785
LmnI	GCTCC	4 cut(s)	229, 397, 635, 856
Lsp1109I	GCAGC	2 cut(s)	207, 820
MaeI	CTAG	3 cut(s)	447, 581, 867
MaeII	ACGT	2 cut(s)	371, 661
MaeIII	GTNAC	2 cut(s)	476, 484
MalI	GATC	3 cut(s)	302, 682, 787
MboI	GATC	3 cut(s)	300, 680, 785
MboII	GAAGA	1 cut(s)	547
MflI	RGATCY	1 cut(s)	785
MhlI	GDGCHC	1 cut(s)	853
MluCI	AATT	1 cut(s)	173
MlyI	GAGTC	3 cut(s)	259, 350, 912
MmeI	TCCRAC	2 cut(s)	251, 763
MnlI	CCTC	7 cut(s)	106, 445, 451, 534, 760, 795, 874
MroXI	GAANNNNTTC	2 cut(s)	134, 519
MseI	TTAA	2 cut(s)	147, 608
MspR9I	CCNGG	4 cut(s)	324, 560, 577, 761
Mva1269I	GAATGC	1 cut(s)	151
MvaI	CCWGG	4 cut(s)	324, 560, 577, 761
MwoI	GCNNNNNNNGC	2 cut(s)	443, 897
NdeI	CATATG	1 cut(s)	727
NdeII	GATC	3 cut(s)	300, 680, 785
NheI	GCTAGC	1 cut(s)	580
NlaIII	CATG	7 cut(s)	94, 307, 407, 428, 484, 798, 865
NlaIV	GGNNCC	3 cut(s)	15, 181, 225
NmeAIII	GCCGAG	1 cut(s)	897
NmuCI	GTSAC	1 cut(s)	484
NspI	RCATGY	1 cut(s)	407
PaqCI	CACCTGC	1 cut(s)	643
PciI	ACATGT	1 cut(s)	403
PctI	GAATGC	1 cut(s)	151
PdmI	GAANNNNTTC	2 cut(s)	134, 519
PfeI	GAWTC	4 cut(s)	130, 135, 271, 548
PflFI	GACNNNGTC	1 cut(s)	370
PfoI	TCCNGGA	1 cut(s)	558
PkrI	GCNGC	4 cut(s)	197, 439, 807, 810
PleI	GAGTC	3 cut(s)	259, 349, 912
PpsI	GAGTC	3 cut(s)	259, 349, 912
PscI	ACATGT	1 cut(s)	403
Psp1406I	AACGTT	1 cut(s)	661
Psp6I	CCWGG	4 cut(s)	322, 558, 575, 759
PspGI	CCWGG	4 cut(s)	322, 558, 575, 759
PspN4I	GGNNCC	3 cut(s)	15, 181, 225
PspPI	GGNCC	2 cut(s)	180, 562
PstNI	CAGNNNCTG	1 cut(s)	551
PsuI	RGATCY	1 cut(s)	785
PsyI	GACNNNGTC	1 cut(s)	370
SaqAI	TTAA	2 cut(s)	147, 608
SatI	GCNGC	4 cut(s)	196, 438, 806, 809
Sau3AI	GATC	3 cut(s)	300, 680, 785
Sau96I	GGNCC	2 cut(s)	180, 562
SchI	GAGTC	3 cut(s)	259, 350, 912
ScrFI	CCNGG	4 cut(s)	324, 560, 577, 761
SduI	GDGCHC	1 cut(s)	853
SinI	GGWCC	2 cut(s)	180, 562
SmlI	CTYRAG	2 cut(s)	125, 338
SmoI	CTYRAG	2 cut(s)	125, 338
Sse9I	AATT	1 cut(s)	173
SsiI	CCGC	3 cut(s)	437, 774, 805
SspMI	CTAG	3 cut(s)	447, 581, 867
StyD4I	CCNGG	4 cut(s)	322, 558, 575, 759
StyI	CCWWGG	1 cut(s)	183
TaaI	ACNGT	1 cut(s)	490
TaiI	ACGT	2 cut(s)	374, 664
TaqI	TCGA	2 cut(s)	133, 736
TasI	AATT	1 cut(s)	173
TauI	GCSGC	2 cut(s)	440, 808
TfiI	GAWTC	4 cut(s)	130, 135, 271, 548
Tru1I	TTAA	2 cut(s)	147, 608
Tru9I	TTAA	2 cut(s)	147, 608
TseFI	GTSAC	1 cut(s)	484
TseI	GCWGC	2 cut(s)	195, 808
Tsp45I	GTSAC	1 cut(s)	484
TspDTI	ATGAA	3 cut(s)	107, 654, 744
TspGWI	ACGGA	1 cut(s)	764
Tth111I	GACNNNGTC	1 cut(s)	370
VpaK11BI	GGWCC	2 cut(s)	180, 562
XagI	CCTNNNNNAGG	1 cut(s)	445
XceI	RCATGY	1 cut(s)	407
XmnI	GAANNNNTTC	2 cut(s)	134, 519
XspI	CTAG	3 cut(s)	447, 581, 867

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.